EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000003340 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 4492 bases
Position: chrreftig_1:646342-650833
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000005586	RNA_pol_Rpc34	PF05158.12	1.4e-61	1	1
ENSCSAVP00000005585	RNA_pol_Rpc34	PF05158.12	1.4e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000005661	-	757	-	ENSCSAVP00000005586	225 (aa)	-	H2YJT7
ENSCSAVT00000005660	-	1098	-	ENSCSAVP00000005585	170 (aa)	-	H2YJT6

Gene Model

Click here to download ENSCSAVG00000003340's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003340's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003340	-	96	66.272	ENSG00000132664	POLR3F	70	59.193	Homo_sapiens
ENSCSAVG00000003340	-	96	63.905	ENSAPOG00000008271	polr3f	71	59.111	Acanthochromis_polyacanthus
ENSCSAVG00000003340	-	96	66.272	ENSAMEG00000005222	POLR3F	70	59.193	Ailuropoda_melanoleuca
ENSCSAVG00000003340	-	96	63.905	ENSACIG00000006705	polr3f	66	57.282	Amphilophus_citrinellus
ENSCSAVG00000003340	-	96	63.905	ENSAOCG00000000687	polr3f	71	59.111	Amphiprion_ocellaris
ENSCSAVG00000003340	-	96	63.905	ENSAPEG00000015263	polr3f	71	59.111	Amphiprion_percula
ENSCSAVG00000003340	-	96	63.905	ENSATEG00000015539	polr3f	68	65.241	Anabas_testudineus
ENSCSAVG00000003340	-	96	66.272	ENSAPLG00000005533	POLR3F	68	65.775	Anas_platyrhynchos
ENSCSAVG00000003340	-	96	64.497	ENSACAG00000014293	POLR3F	71	61.364	Anolis_carolinensis
ENSCSAVG00000003340	-	96	66.272	ENSANAG00000026726	POLR3F	70	59.193	Aotus_nancymaae
ENSCSAVG00000003340	-	96	63.905	ENSACLG00000003615	polr3f	71	58.222	Astatotilapia_calliptera
ENSCSAVG00000003340	-	96	63.905	ENSAMXG00000036020	polr3f	71	59.193	Astyanax_mexicanus
ENSCSAVG00000003340	-	96	66.272	ENSBTAG00000008825	POLR3F	70	59.193	Bos_taurus
ENSCSAVG00000003340	-	96	32.558	WBGene00021112	W09C3.4	72	32.558	Caenorhabditis_elegans
ENSCSAVG00000003340	-	96	66.272	ENSCJAG00000005159	POLR3F	70	59.193	Callithrix_jacchus
ENSCSAVG00000003340	-	96	66.272	ENSCAFG00000005420	POLR3F	71	57.826	Canis_familiaris
ENSCSAVG00000003340	-	96	66.272	ENSCAFG00020027500	POLR3F	70	58.744	Canis_lupus_dingo
ENSCSAVG00000003340	-	96	66.272	ENSCHIG00000014743	POLR3F	70	59.193	Capra_hircus
ENSCSAVG00000003340	-	96	66.272	ENSTSYG00000004207	POLR3F	70	59.193	Carlito_syrichta
ENSCSAVG00000003340	-	70	40.000	ENSCAPG00000008423	POLR3F	60	40.000	Cavia_aperea
ENSCSAVG00000003340	-	96	65.680	ENSCPOG00000002400	POLR3F	71	59.556	Cavia_porcellus
ENSCSAVG00000003340	-	96	57.988	ENSCCAG00000021800	POLR3F	66	62.903	Cebus_capucinus
ENSCSAVG00000003340	-	96	66.272	ENSCATG00000019507	POLR3F	70	59.193	Cercocebus_atys
ENSCSAVG00000003340	-	96	66.272	ENSCLAG00000016296	POLR3F	71	59.556	Chinchilla_lanigera
ENSCSAVG00000003340	-	96	66.272	ENSCSAG00000011513	POLR3F	70	59.193	Chlorocebus_sabaeus
ENSCSAVG00000003340	-	96	66.272	ENSCPBG00000023473	POLR3F	63	72.000	Chrysemys_picta_bellii
ENSCSAVG00000003340	-	96	88.415	ENSCING00000001212	-	72	82.511	Ciona_intestinalis
ENSCSAVG00000003340	-	96	66.272	ENSCANG00000037390	POLR3F	76	59.193	Colobus_angolensis_palliatus
ENSCSAVG00000003340	-	96	65.680	ENSCGRG00001002032	Polr3f	70	58.744	Cricetulus_griseus_chok1gshd
ENSCSAVG00000003340	-	96	65.680	ENSCGRG00000010852	Polr3f	70	58.744	Cricetulus_griseus_crigri
ENSCSAVG00000003340	-	96	63.905	ENSCSEG00000001247	polr3f	68	61.111	Cynoglossus_semilaevis
ENSCSAVG00000003340	-	96	63.314	ENSCVAG00000007611	polr3f	71	58.667	Cyprinodon_variegatus
ENSCSAVG00000003340	-	99	60.987	ENSDARG00000012572	polr3f	71	60.987	Danio_rerio
ENSCSAVG00000003340	-	96	65.680	ENSDNOG00000010719	POLR3F	70	56.306	Dasypus_novemcinctus
ENSCSAVG00000003340	-	96	65.680	ENSDORG00000016352	Polr3f	70	59.193	Dipodomys_ordii
ENSCSAVG00000003340	-	96	49.693	FBgn0038951	CG5380	73	47.442	Drosophila_melanogaster
ENSCSAVG00000003340	-	82	47.586	ENSETEG00000015485	-	51	47.586	Echinops_telfairi
ENSCSAVG00000003340	-	96	64.497	ENSEBUG00000006783	polr3f	70	60.633	Eptatretus_burgeri
ENSCSAVG00000003340	-	96	66.272	ENSEASG00005002022	POLR3F	70	59.193	Equus_asinus_asinus
ENSCSAVG00000003340	-	96	66.272	ENSECAG00000009920	POLR3F	70	59.193	Equus_caballus
ENSCSAVG00000003340	-	99	43.946	ENSEEUG00000000184	POLR3F	70	43.946	Erinaceus_europaeus
ENSCSAVG00000003340	-	96	63.905	ENSELUG00000001558	polr3f	71	60.090	Esox_lucius
ENSCSAVG00000003340	-	96	66.272	ENSFCAG00000013828	POLR3F	70	59.193	Felis_catus
ENSCSAVG00000003340	-	96	65.680	ENSFALG00000007623	POLR3F	68	65.775	Ficedula_albicollis
ENSCSAVG00000003340	-	96	66.272	ENSFDAG00000002528	POLR3F	71	59.556	Fukomys_damarensis
ENSCSAVG00000003340	-	96	62.130	ENSFHEG00000006450	polr3f	71	57.778	Fundulus_heteroclitus
ENSCSAVG00000003340	-	96	66.864	ENSGALG00000008749	POLR3F	71	59.641	Gallus_gallus
ENSCSAVG00000003340	-	96	62.722	ENSGAFG00000003698	polr3f	71	58.667	Gambusia_affinis
ENSCSAVG00000003340	-	53	75.410	ENSGACG00000019915	polr3f	92	75.410	Gasterosteus_aculeatus
ENSCSAVG00000003340	-	96	66.272	ENSGAGG00000006151	POLR3F	71	59.641	Gopherus_agassizii
ENSCSAVG00000003340	-	96	66.272	ENSGGOG00000011543	POLR3F	70	59.193	Gorilla_gorilla
ENSCSAVG00000003340	-	96	63.905	ENSHBUG00000013806	polr3f	71	58.222	Haplochromis_burtoni
ENSCSAVG00000003340	-	96	66.272	ENSHGLG00000011867	POLR3F	70	59.193	Heterocephalus_glaber_female
ENSCSAVG00000003340	-	96	66.272	ENSHGLG00100012577	POLR3F	70	59.193	Heterocephalus_glaber_male
ENSCSAVG00000003340	-	99	56.000	ENSHCOG00000011751	polr3f	71	56.000	Hippocampus_comes
ENSCSAVG00000003340	-	96	63.905	ENSIPUG00000013347	polr3f	71	60.538	Ictalurus_punctatus
ENSCSAVG00000003340	-	96	66.272	ENSSTOG00000013588	POLR3F	70	59.193	Ictidomys_tridecemlineatus
ENSCSAVG00000003340	-	96	65.089	ENSJJAG00000017513	Polr3f	70	59.193	Jaculus_jaculus
ENSCSAVG00000003340	-	96	64.497	ENSKMAG00000016495	polr3f	65	64.497	Kryptolebias_marmoratus
ENSCSAVG00000003340	-	96	63.905	ENSLBEG00000011998	polr3f	72	63.905	Labrus_bergylta
ENSCSAVG00000003340	-	96	66.864	ENSLACG00000009371	POLR3F	71	61.435	Latimeria_chalumnae
ENSCSAVG00000003340	-	96	65.680	ENSLOCG00000015701	polr3f	71	60.538	Lepisosteus_oculatus
ENSCSAVG00000003340	-	96	66.272	ENSLAFG00000004929	POLR3F	70	59.193	Loxodonta_africana
ENSCSAVG00000003340	-	96	66.272	ENSMFAG00000002227	POLR3F	70	59.193	Macaca_fascicularis
ENSCSAVG00000003340	-	96	66.272	ENSMMUG00000004143	POLR3F	68	66.310	Macaca_mulatta
ENSCSAVG00000003340	-	96	66.272	ENSMNEG00000033404	POLR3F	70	59.193	Macaca_nemestrina
ENSCSAVG00000003340	-	96	66.272	ENSMLEG00000021905	POLR3F	70	59.193	Mandrillus_leucophaeus
ENSCSAVG00000003340	-	96	63.905	ENSMAMG00000017975	polr3f	71	60.000	Mastacembelus_armatus
ENSCSAVG00000003340	-	96	63.905	ENSMZEG00005015134	polr3f	71	58.222	Maylandia_zebra
ENSCSAVG00000003340	-	96	66.864	ENSMGAG00000006691	POLR3F	71	60.538	Meleagris_gallopavo
ENSCSAVG00000003340	-	96	65.680	ENSMAUG00000020176	Polr3f	70	59.193	Mesocricetus_auratus
ENSCSAVG00000003340	-	96	66.272	ENSMICG00000044519	POLR3F	70	59.193	Microcebus_murinus
ENSCSAVG00000003340	-	96	65.089	ENSMOCG00000018352	Polr3f	70	58.744	Microtus_ochrogaster
ENSCSAVG00000003340	-	96	64.327	ENSMMOG00000018477	polr3f	69	61.353	Mola_mola
ENSCSAVG00000003340	-	96	66.272	ENSMODG00000005624	POLR3F	71	59.556	Monodelphis_domestica
ENSCSAVG00000003340	-	96	63.905	ENSMALG00000006685	polr3f	68	60.648	Monopterus_albus
ENSCSAVG00000003340	-	96	65.680	MGP_CAROLIEiJ_G0024385	Polr3f	70	59.193	Mus_caroli
ENSCSAVG00000003340	-	96	65.680	ENSMUSG00000027427	Polr3f	70	59.193	Mus_musculus
ENSCSAVG00000003340	-	96	65.680	MGP_PahariEiJ_G0025829	Polr3f	70	59.193	Mus_pahari
ENSCSAVG00000003340	-	96	65.680	MGP_SPRETEiJ_G0025304	Polr3f	70	59.193	Mus_spretus
ENSCSAVG00000003340	-	96	38.919	ENSMPUG00000001252	-	57	46.237	Mustela_putorius_furo
ENSCSAVG00000003340	-	96	66.272	ENSMLUG00000014844	POLR3F	70	58.744	Myotis_lucifugus
ENSCSAVG00000003340	-	96	65.089	ENSNGAG00000010898	Polr3f	70	59.193	Nannospalax_galili
ENSCSAVG00000003340	-	96	63.905	ENSNBRG00000020796	polr3f	71	58.222	Neolamprologus_brichardi
ENSCSAVG00000003340	-	96	66.272	ENSNLEG00000009778	POLR3F	70	59.193	Nomascus_leucogenys
ENSCSAVG00000003340	-	96	56.805	ENSMEUG00000010320	POLR3F	70	54.589	Notamacropus_eugenii
ENSCSAVG00000003340	-	96	66.864	ENSOPRG00000003385	POLR3F	70	59.641	Ochotona_princeps
ENSCSAVG00000003340	-	96	66.272	ENSODEG00000011521	POLR3F	71	60.000	Octodon_degus
ENSCSAVG00000003340	-	96	63.905	ENSONIG00000006858	polr3f	71	57.333	Oreochromis_niloticus
ENSCSAVG00000003340	-	96	66.272	ENSOANG00000001253	POLR3F	70	59.193	Ornithorhynchus_anatinus
ENSCSAVG00000003340	-	96	66.272	ENSOCUG00000015067	POLR3F	70	59.193	Oryctolagus_cuniculus
ENSCSAVG00000003340	-	96	62.130	ENSORLG00000022412	polr3f	71	59.111	Oryzias_latipes
ENSCSAVG00000003340	-	96	62.130	ENSORLG00020021944	polr3f	71	59.111	Oryzias_latipes_hni
ENSCSAVG00000003340	-	96	65.089	ENSOGAG00000002916	POLR3F	70	58.744	Otolemur_garnettii
ENSCSAVG00000003340	-	96	66.272	ENSOARG00000000315	-	70	59.193	Ovis_aries
ENSCSAVG00000003340	-	96	66.272	ENSPPAG00000036681	POLR3F	70	59.193	Pan_paniscus
ENSCSAVG00000003340	-	96	66.272	ENSPPRG00000024604	POLR3F	70	59.193	Panthera_pardus
ENSCSAVG00000003340	-	96	66.272	ENSPTIG00000020292	POLR3F	70	59.193	Panthera_tigris_altaica
ENSCSAVG00000003340	-	96	66.272	ENSPTRG00000013287	POLR3F	70	59.193	Pan_troglodytes
ENSCSAVG00000003340	-	96	66.272	ENSPANG00000025015	POLR3F	70	59.193	Papio_anubis
ENSCSAVG00000003340	-	96	64.497	ENSPKIG00000004427	polr3f	71	60.987	Paramormyrops_kingsleyae
ENSCSAVG00000003340	-	96	66.864	ENSPSIG00000016613	POLR3F	68	66.310	Pelodiscus_sinensis
ENSCSAVG00000003340	-	96	35.503	ENSPMGG00000018350	polr3f	50	37.870	Periophthalmus_magnuspinnatus
ENSCSAVG00000003340	-	96	65.089	ENSPEMG00000006966	Polr3f	70	58.744	Peromyscus_maniculatus_bairdii
ENSCSAVG00000003340	-	96	62.722	ENSPMAG00000005530	polr3f	70	58.371	Petromyzon_marinus
ENSCSAVG00000003340	-	96	66.272	ENSPCIG00000000908	POLR3F	60	59.556	Phascolarctos_cinereus
ENSCSAVG00000003340	-	96	62.722	ENSPFOG00000018334	polr3f	71	58.667	Poecilia_formosa
ENSCSAVG00000003340	-	96	62.722	ENSPLAG00000021803	polr3f	71	58.667	Poecilia_latipinna
ENSCSAVG00000003340	-	96	62.722	ENSPMEG00000013150	polr3f	71	58.667	Poecilia_mexicana
ENSCSAVG00000003340	-	96	62.722	ENSPREG00000005278	polr3f	71	58.667	Poecilia_reticulata
ENSCSAVG00000003340	-	96	66.272	ENSPPYG00000010737	POLR3F	70	59.193	Pongo_abelii
ENSCSAVG00000003340	-	96	66.272	ENSPCOG00000004543	POLR3F	70	59.193	Propithecus_coquereli
ENSCSAVG00000003340	-	96	66.272	ENSPVAG00000000403	POLR3F	70	59.193	Pteropus_vampyrus
ENSCSAVG00000003340	-	96	63.905	ENSPNYG00000016276	polr3f	71	58.222	Pundamilia_nyererei
ENSCSAVG00000003340	-	96	64.497	ENSPNAG00000005164	polr3f	71	61.435	Pygocentrus_nattereri
ENSCSAVG00000003340	-	96	65.680	ENSRNOG00000007548	Polr3f	60	59.193	Rattus_norvegicus
ENSCSAVG00000003340	-	96	66.272	ENSRBIG00000021268	POLR3F	70	59.193	Rhinopithecus_bieti
ENSCSAVG00000003340	-	96	66.272	ENSRROG00000039911	POLR3F	70	59.193	Rhinopithecus_roxellana
ENSCSAVG00000003340	-	86	30.374	YNR003C	RPC34	68	30.374	Saccharomyces_cerevisiae
ENSCSAVG00000003340	-	96	66.272	ENSSBOG00000018207	POLR3F	70	59.193	Saimiri_boliviensis_boliviensis
ENSCSAVG00000003340	-	96	66.272	ENSSHAG00000018160	POLR3F	54	66.272	Sarcophilus_harrisii
ENSCSAVG00000003340	-	96	65.680	ENSSFOG00015022433	polr3f	71	60.538	Scleropages_formosus
ENSCSAVG00000003340	-	96	66.272	ENSSMAG00000021029	polr3f	71	59.556	Scophthalmus_maximus
ENSCSAVG00000003340	-	96	57.988	ENSSDUG00000022435	polr3f	64	63.441	Seriola_dumerili
ENSCSAVG00000003340	-	96	64.497	ENSSLDG00000012761	polr3f	71	59.111	Seriola_lalandi_dorsalis
ENSCSAVG00000003340	-	96	66.272	ENSSARG00000006039	POLR3F	70	51.121	Sorex_araneus
ENSCSAVG00000003340	-	96	65.089	ENSSPUG00000001873	POLR3F	71	60.090	Sphenodon_punctatus
ENSCSAVG00000003340	-	96	63.905	ENSSPAG00000002092	polr3f	58	63.905	Stegastes_partitus
ENSCSAVG00000003340	-	96	66.272	ENSSSCG00000007095	POLR3F	72	66.272	Sus_scrofa
ENSCSAVG00000003340	-	96	65.680	ENSTGUG00000005839	POLR3F	71	59.641	Taeniopygia_guttata
ENSCSAVG00000003340	-	96	64.497	ENSTRUG00000012101	polr3f	71	59.111	Takifugu_rubripes
ENSCSAVG00000003340	-	96	63.314	ENSTNIG00000006456	polr3f	71	58.667	Tetraodon_nigroviridis
ENSCSAVG00000003340	-	99	40.359	ENSTBEG00000007921	POLR3F	70	40.359	Tupaia_belangeri
ENSCSAVG00000003340	-	96	66.272	ENSTTRG00000002580	POLR3F	70	59.193	Tursiops_truncatus
ENSCSAVG00000003340	-	78	60.870	ENSUAMG00000024166	POLR3F	83	60.870	Ursus_americanus
ENSCSAVG00000003340	-	96	65.680	ENSUMAG00000024944	POLR3F	71	58.261	Ursus_maritimus
ENSCSAVG00000003340	-	96	66.864	ENSVPAG00000009063	POLR3F	70	59.641	Vicugna_pacos
ENSCSAVG00000003340	-	96	66.272	ENSVVUG00000012925	POLR3F	70	58.744	Vulpes_vulpes
ENSCSAVG00000003340	-	96	64.497	ENSXETG00000024898	polr3f	70	58.559	Xenopus_tropicalis
ENSCSAVG00000003340	-	96	62.722	ENSXCOG00000010301	polr3f	68	64.171	Xiphophorus_couchianus
ENSCSAVG00000003340	-	96	62.722	ENSXMAG00000004604	polr3f	71	58.222	Xiphophorus_maculatus