EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000003355 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 4748 bases
Position: chrreftig_134:58749-63496
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000005628	eIF2A	PF08662.11	4.7e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000005704	-	786	-	ENSCSAVP00000005629	262 (aa)	-	H2YJY0
ENSCSAVT00000005703	-	1064	-	ENSCSAVP00000005628	338 (aa)	-	H2YJX9

Gene Model

Click here to download ENSCSAVG00000003355's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003355's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000003355	-	99	31.126	ENSCSAVG00000003416	-	81	31.126
ENSCSAVG00000003355	-	97	33.065	ENSCSAVG00000003310	-	97	33.065
ENSCSAVG00000003355	-	81	32.000	ENSCSAVG00000008477	-	84	32.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003355	-	99	82.143	ENSCING00000006781	-	99	82.143	Ciona_intestinalis
ENSCSAVG00000003355	-	99	61.677	ENSCGRG00001016622	Ciao1	96	61.677	Cricetulus_griseus_chok1gshd
ENSCSAVG00000003355	-	99	56.024	ENSMZEG00005010812	ciao1	100	56.024	Maylandia_zebra
ENSCSAVG00000003355	-	99	61.677	ENSMAUG00000021994	Ciao1	99	61.677	Mesocricetus_auratus
ENSCSAVG00000003355	-	99	61.677	ENSMOCG00000009518	Ciao1	99	61.677	Microtus_ochrogaster
ENSCSAVG00000003355	-	99	54.303	ENSMALG00000002097	ciao1	99	54.303	Monopterus_albus
ENSCSAVG00000003355	-	99	61.677	MGP_CAROLIEiJ_G0024251	Ciao1	96	61.677	Mus_caroli
ENSCSAVG00000003355	-	99	61.677	ENSMUSG00000003662	Ciao1	96	61.677	Mus_musculus
ENSCSAVG00000003355	-	99	62.874	MGP_PahariEiJ_G0025696	Ciao1	99	62.874	Mus_pahari
ENSCSAVG00000003355	-	99	61.677	MGP_SPRETEiJ_G0025171	Ciao1	96	61.677	Mus_spretus
ENSCSAVG00000003355	-	99	62.275	ENSPEMG00000015800	Ciao1	99	62.275	Peromyscus_maniculatus_bairdii