EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000003375 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 10569 bases
Position: chrreftig_132:301821-312389
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000005666	ResIII	PF04851.15	1.7e-06	1	1
ENSCSAVP00000005665	ResIII	PF04851.15	4.5e-06	1	1
ENSCSAVP00000005666	DEAD	PF00270.29	1.6e-38	1	1
ENSCSAVP00000005665	DEAD	PF00270.29	8.9e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000005740	-	2049	-	ENSCSAVP00000005665	591 (aa)	-	H2YK16
ENSCSAVT00000005741	-	1647	-	ENSCSAVP00000005666	549 (aa)	-	H2YK17

Gene Model

Click here to download ENSCSAVG00000003375's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003375's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000003375	-	80	31.211	ENSCSAVG00000004227	-	92	32.033
ENSCSAVG00000003375	-	68	33.854	ENSCSAVG00000008916	-	100	33.989
ENSCSAVG00000003375	-	61	30.939	ENSCSAVG00000009920	-	91	30.939
ENSCSAVG00000003375	-	83	34.348	ENSCSAVG00000003023	-	78	34.649
ENSCSAVG00000003375	-	86	34.156	ENSCSAVG00000004895	-	85	36.059
ENSCSAVG00000003375	-	70	33.503	ENSCSAVG00000011566	-	80	34.726
ENSCSAVG00000003375	-	65	31.078	ENSCSAVG00000000522	-	87	31.078
ENSCSAVG00000003375	-	67	30.548	ENSCSAVG00000004304	-	56	31.510
ENSCSAVG00000003375	-	65	30.946	ENSCSAVG00000002353	-	70	31.313
ENSCSAVG00000003375	-	58	30.347	ENSCSAVG00000000630	-	90	31.319

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003375	-	97	53.886	ENSG00000111364	DDX55	95	52.749	Homo_sapiens
ENSCSAVG00000003375	-	97	53.265	ENSAPOG00000013126	ddx55	97	53.265	Acanthochromis_polyacanthus
ENSCSAVG00000003375	-	97	52.830	ENSAMEG00000015274	DDX55	95	51.973	Ailuropoda_melanoleuca
ENSCSAVG00000003375	-	99	52.605	ENSACIG00000007580	ddx55	99	52.269	Amphilophus_citrinellus
ENSCSAVG00000003375	-	99	52.703	ENSAOCG00000012037	ddx55	92	52.703	Amphiprion_ocellaris
ENSCSAVG00000003375	-	99	53.041	ENSAPEG00000011003	ddx55	92	52.365	Amphiprion_percula
ENSCSAVG00000003375	-	98	54.017	ENSATEG00000004029	ddx55	96	53.504	Anabas_testudineus
ENSCSAVG00000003375	-	92	51.091	ENSAPLG00000015032	DDX55	96	51.091	Anas_platyrhynchos
ENSCSAVG00000003375	-	97	53.701	ENSACAG00000015296	DDX55	95	53.012	Anolis_carolinensis
ENSCSAVG00000003375	-	86	52.273	ENSANAG00000034064	DDX55	95	52.273	Aotus_nancymaae
ENSCSAVG00000003375	-	99	53.356	ENSACLG00000024691	ddx55	99	52.852	Astatotilapia_calliptera
ENSCSAVG00000003375	-	94	46.552	ENSAMXG00000019947	ddx55	94	47.150	Astyanax_mexicanus
ENSCSAVG00000003375	-	97	53.688	ENSBTAG00000007266	DDX55	95	50.172	Bos_taurus
ENSCSAVG00000003375	-	95	37.736	WBGene00013983	ZK512.2	99	36.364	Caenorhabditis_elegans
ENSCSAVG00000003375	-	97	53.265	ENSCJAG00000020471	-	95	53.436	Callithrix_jacchus
ENSCSAVG00000003375	-	98	53.114	ENSCAFG00000007452	DDX55	95	52.677	Canis_familiaris
ENSCSAVG00000003375	-	98	53.114	ENSCAFG00020015254	DDX55	93	55.747	Canis_lupus_dingo
ENSCSAVG00000003375	-	97	53.966	ENSCHIG00000020402	DDX55	95	52.830	Capra_hircus
ENSCSAVG00000003375	-	97	53.541	ENSTSYG00000007427	DDX55	95	52.405	Carlito_syrichta
ENSCSAVG00000003375	-	96	51.979	ENSCAPG00000005124	DDX55	96	51.119	Cavia_aperea
ENSCSAVG00000003375	-	98	53.005	ENSCPOG00000010015	DDX55	96	52.568	Cavia_porcellus
ENSCSAVG00000003375	-	97	53.093	ENSCCAG00000021652	DDX55	95	52.577	Cebus_capucinus
ENSCSAVG00000003375	-	97	51.877	ENSCATG00000034315	DDX55	95	50.764	Cercocebus_atys
ENSCSAVG00000003375	-	97	54.750	ENSCLAG00000011203	DDX55	95	53.780	Chinchilla_lanigera
ENSCSAVG00000003375	-	97	54.404	ENSCSAG00000002057	DDX55	95	53.265	Chlorocebus_sabaeus
ENSCSAVG00000003375	-	95	53.598	ENSCPBG00000025960	DDX55	94	55.725	Chrysemys_picta_bellii
ENSCSAVG00000003375	-	99	78.475	ENSCING00000009622	-	99	78.475	Ciona_intestinalis
ENSCSAVG00000003375	-	97	53.713	ENSCANG00000000156	DDX55	95	52.577	Colobus_angolensis_palliatus
ENSCSAVG00000003375	-	97	52.677	ENSCGRG00001001652	Ddx55	95	52.159	Cricetulus_griseus_chok1gshd
ENSCSAVG00000003375	-	97	52.677	ENSCGRG00000014742	Ddx55	95	52.159	Cricetulus_griseus_crigri
ENSCSAVG00000003375	-	98	52.577	ENSCSEG00000012161	ddx55	96	52.577	Cynoglossus_semilaevis
ENSCSAVG00000003375	-	97	53.448	ENSCVAG00000006635	ddx55	97	53.621	Cyprinodon_variegatus
ENSCSAVG00000003375	-	94	52.964	ENSDARG00000009864	ddx55	95	52.962	Danio_rerio
ENSCSAVG00000003375	-	97	53.103	ENSDNOG00000005167	DDX55	94	52.830	Dasypus_novemcinctus
ENSCSAVG00000003375	-	97	42.529	FBgn0037561	CG9630	98	42.036	Drosophila_melanogaster
ENSCSAVG00000003375	-	82	65.116	ENSETEG00000001826	DDX55	86	65.116	Echinops_telfairi
ENSCSAVG00000003375	-	99	49.423	ENSEBUG00000007071	ddx55	99	49.736	Eptatretus_burgeri
ENSCSAVG00000003375	-	97	53.516	ENSEASG00005012650	DDX55	99	54.491	Equus_asinus_asinus
ENSCSAVG00000003375	-	95	53.585	ENSECAG00000011237	DDX55	83	55.703	Equus_caballus
ENSCSAVG00000003375	-	97	47.089	ENSEEUG00000006313	DDX55	95	46.233	Erinaceus_europaeus
ENSCSAVG00000003375	-	99	54.561	ENSELUG00000002616	ddx55	96	53.885	Esox_lucius
ENSCSAVG00000003375	-	97	53.436	ENSFCAG00000003770	DDX55	95	52.921	Felis_catus
ENSCSAVG00000003375	-	96	53.460	ENSFALG00000009300	DDX55	95	53.043	Ficedula_albicollis
ENSCSAVG00000003375	-	97	54.059	ENSFDAG00000004680	DDX55	95	53.093	Fukomys_damarensis
ENSCSAVG00000003375	-	97	53.793	ENSFHEG00000007912	ddx55	97	53.276	Fundulus_heteroclitus
ENSCSAVG00000003375	-	97	50.687	ENSGMOG00000017762	ddx55	95	50.687	Gadus_morhua
ENSCSAVG00000003375	-	98	52.477	ENSGALG00000003298	DDX55	95	53.043	Gallus_gallus
ENSCSAVG00000003375	-	98	53.333	ENSGAFG00000004388	ddx55	98	53.333	Gambusia_affinis
ENSCSAVG00000003375	-	99	52.614	ENSGACG00000015591	ddx55	94	52.277	Gasterosteus_aculeatus
ENSCSAVG00000003375	-	95	53.788	ENSGAGG00000014403	DDX55	94	55.916	Gopherus_agassizii
ENSCSAVG00000003375	-	97	53.886	ENSGGOG00000026102	DDX55	95	52.749	Gorilla_gorilla
ENSCSAVG00000003375	-	99	53.356	ENSHBUG00000011523	ddx55	99	52.852	Haplochromis_burtoni
ENSCSAVG00000003375	-	98	52.641	ENSHGLG00000019202	DDX55	95	52.749	Heterocephalus_glaber_female
ENSCSAVG00000003375	-	98	52.641	ENSHGLG00100019440	DDX55	95	52.749	Heterocephalus_glaber_male
ENSCSAVG00000003375	-	98	45.656	ENSHCOG00000004710	ddx55	98	45.392	Hippocampus_comes
ENSCSAVG00000003375	-	94	55.575	ENSIPUG00000014551	ddx55	93	54.340	Ictalurus_punctatus
ENSCSAVG00000003375	-	97	53.886	ENSSTOG00000006121	DDX55	95	52.921	Ictidomys_tridecemlineatus
ENSCSAVG00000003375	-	97	53.553	ENSJJAG00000013401	Ddx55	95	52.586	Jaculus_jaculus
ENSCSAVG00000003375	-	99	52.007	ENSKMAG00000022006	ddx55	97	52.226	Kryptolebias_marmoratus
ENSCSAVG00000003375	-	99	52.961	ENSLBEG00000021815	ddx55	97	52.453	Labrus_bergylta
ENSCSAVG00000003375	-	95	52.841	ENSLACG00000017050	DDX55	95	51.979	Latimeria_chalumnae
ENSCSAVG00000003375	-	98	51.706	ENSLOCG00000005828	ddx55	96	51.536	Lepisosteus_oculatus
ENSCSAVG00000003375	-	97	54.138	ENSLAFG00000007293	DDX55	95	53.276	Loxodonta_africana
ENSCSAVG00000003375	-	97	53.886	ENSMFAG00000038165	DDX55	95	52.749	Macaca_fascicularis
ENSCSAVG00000003375	-	97	54.059	ENSMMUG00000013178	DDX55	95	52.921	Macaca_mulatta
ENSCSAVG00000003375	-	97	53.886	ENSMNEG00000028630	DDX55	95	52.749	Macaca_nemestrina
ENSCSAVG00000003375	-	97	53.886	ENSMLEG00000039187	DDX55	95	52.749	Mandrillus_leucophaeus
ENSCSAVG00000003375	-	98	53.425	ENSMAMG00000011297	ddx55	96	52.911	Mastacembelus_armatus
ENSCSAVG00000003375	-	99	53.356	ENSMZEG00005008047	ddx55	99	52.852	Maylandia_zebra
ENSCSAVG00000003375	-	90	53.346	ENSMGAG00000003185	DDX55	89	52.602	Meleagris_gallopavo
ENSCSAVG00000003375	-	97	53.022	ENSMAUG00000020054	Ddx55	95	52.332	Mesocricetus_auratus
ENSCSAVG00000003375	-	97	46.552	ENSMICG00000006477	DDX55	95	45.455	Microcebus_murinus
ENSCSAVG00000003375	-	97	52.677	ENSMOCG00000021289	Ddx55	95	52.405	Microtus_ochrogaster
ENSCSAVG00000003375	-	98	53.082	ENSMMOG00000009411	ddx55	95	53.276	Mola_mola
ENSCSAVG00000003375	-	90	53.094	ENSMODG00000012519	DDX55	93	52.813	Monodelphis_domestica
ENSCSAVG00000003375	-	99	47.395	ENSMALG00000018543	ddx55	97	47.395	Monopterus_albus
ENSCSAVG00000003375	-	81	53.556	MGP_CAROLIEiJ_G0027755	-	98	56.502	Mus_caroli
ENSCSAVG00000003375	-	97	52.677	ENSMUSG00000029389	Ddx55	95	52.487	Mus_musculus
ENSCSAVG00000003375	-	97	51.295	MGP_PahariEiJ_G0024335	Ddx55	95	51.031	Mus_pahari
ENSCSAVG00000003375	-	97	52.677	MGP_SPRETEiJ_G0028753	Ddx55	95	52.487	Mus_spretus
ENSCSAVG00000003375	-	98	49.818	ENSMPUG00000001505	DDX55	95	49.400	Mustela_putorius_furo
ENSCSAVG00000003375	-	89	50.471	ENSMLUG00000001265	-	89	50.471	Myotis_lucifugus
ENSCSAVG00000003375	-	95	47.655	ENSMLUG00000025148	-	95	49.811	Myotis_lucifugus
ENSCSAVG00000003375	-	98	52.468	ENSNGAG00000020564	Ddx55	95	52.487	Nannospalax_galili
ENSCSAVG00000003375	-	99	53.523	ENSNBRG00000018748	ddx55	99	53.020	Neolamprologus_brichardi
ENSCSAVG00000003375	-	97	53.886	ENSNLEG00000001658	DDX55	95	52.749	Nomascus_leucogenys
ENSCSAVG00000003375	-	95	50.189	ENSMEUG00000013689	DDX55	95	50.172	Notamacropus_eugenii
ENSCSAVG00000003375	-	97	53.356	ENSOPRG00000000850	DDX55	95	52.496	Ochotona_princeps
ENSCSAVG00000003375	-	94	45.520	ENSODEG00000016592	-	93	47.276	Octodon_degus
ENSCSAVG00000003375	-	98	52.355	ENSODEG00000009632	-	96	52.479	Octodon_degus
ENSCSAVG00000003375	-	99	53.356	ENSONIG00000015311	ddx55	97	52.605	Oreochromis_niloticus
ENSCSAVG00000003375	-	93	54.513	ENSOANG00000015332	DDX55	96	53.610	Ornithorhynchus_anatinus
ENSCSAVG00000003375	-	97	53.265	ENSOCUG00000003456	DDX55	95	52.405	Oryctolagus_cuniculus
ENSCSAVG00000003375	-	98	51.966	ENSORLG00000029482	ddx55	97	51.966	Oryzias_latipes
ENSCSAVG00000003375	-	98	52.137	ENSORLG00015004885	ddx55	97	52.137	Oryzias_latipes_hsok
ENSCSAVG00000003375	-	98	52.911	ENSOMEG00000023619	ddx55	97	52.911	Oryzias_melastigma
ENSCSAVG00000003375	-	97	53.368	ENSOGAG00000009195	DDX55	95	52.577	Otolemur_garnettii
ENSCSAVG00000003375	-	97	54.138	ENSOARG00000003364	DDX55	95	53.002	Ovis_aries
ENSCSAVG00000003375	-	96	53.633	ENSPPAG00000005988	DDX55	95	52.668	Pan_paniscus
ENSCSAVG00000003375	-	97	53.436	ENSPPRG00000012157	DDX55	95	52.921	Panthera_pardus
ENSCSAVG00000003375	-	92	53.804	ENSPTIG00000011490	DDX55	90	53.261	Panthera_tigris_altaica
ENSCSAVG00000003375	-	97	53.886	ENSPTRG00000005601	DDX55	95	52.749	Pan_troglodytes
ENSCSAVG00000003375	-	97	53.886	ENSPANG00000007905	DDX55	95	52.749	Papio_anubis
ENSCSAVG00000003375	-	98	52.381	ENSPKIG00000023661	ddx55	96	53.217	Paramormyrops_kingsleyae
ENSCSAVG00000003375	-	93	53.929	ENSPSIG00000012901	DDX55	98	52.888	Pelodiscus_sinensis
ENSCSAVG00000003375	-	98	51.273	ENSPMGG00000017224	ddx55	95	54.183	Periophthalmus_magnuspinnatus
ENSCSAVG00000003375	-	97	53.022	ENSPEMG00000018052	Ddx55	95	52.749	Peromyscus_maniculatus_bairdii
ENSCSAVG00000003375	-	88	48.582	ENSPMAG00000007486	ddx55	99	48.771	Petromyzon_marinus
ENSCSAVG00000003375	-	95	52.751	ENSPCIG00000010973	DDX55	93	54.857	Phascolarctos_cinereus
ENSCSAVG00000003375	-	98	52.981	ENSPFOG00000006970	ddx55	90	52.981	Poecilia_formosa
ENSCSAVG00000003375	-	98	53.162	ENSPLAG00000014735	ddx55	98	53.162	Poecilia_latipinna
ENSCSAVG00000003375	-	98	53.333	ENSPMEG00000020635	ddx55	98	53.333	Poecilia_mexicana
ENSCSAVG00000003375	-	98	52.821	ENSPREG00000016644	ddx55	98	52.821	Poecilia_reticulata
ENSCSAVG00000003375	-	95	52.363	ENSPPYG00000005091	DDX55	95	52.062	Pongo_abelii
ENSCSAVG00000003375	-	97	53.701	ENSPCAG00000014127	DDX55	95	52.840	Procavia_capensis
ENSCSAVG00000003375	-	97	53.368	ENSPCOG00000011189	DDX55	95	52.234	Propithecus_coquereli
ENSCSAVG00000003375	-	97	51.379	ENSPVAG00000015321	DDX55	95	51.379	Pteropus_vampyrus
ENSCSAVG00000003375	-	99	53.188	ENSPNYG00000003669	ddx55	99	52.685	Pundamilia_nyererei
ENSCSAVG00000003375	-	94	54.448	ENSPNAG00000012855	ddx55	92	53.737	Pygocentrus_nattereri
ENSCSAVG00000003375	-	97	53.368	ENSRNOG00000001043	Ddx55	95	53.093	Rattus_norvegicus
ENSCSAVG00000003375	-	97	53.195	ENSRBIG00000044699	DDX55	95	52.062	Rhinopithecus_bieti
ENSCSAVG00000003375	-	97	53.541	ENSRROG00000024824	DDX55	95	52.405	Rhinopithecus_roxellana
ENSCSAVG00000003375	-	94	37.662	YFL002C	-	85	39.773	Saccharomyces_cerevisiae
ENSCSAVG00000003375	-	97	53.093	ENSSBOG00000024833	DDX55	95	52.749	Saimiri_boliviensis_boliviensis
ENSCSAVG00000003375	-	90	53.187	ENSSHAG00000015820	DDX55	96	53.080	Sarcophilus_harrisii
ENSCSAVG00000003375	-	99	51.543	ENSSFOG00015017496	ddx55	94	52.316	Scleropages_formosus
ENSCSAVG00000003375	-	97	53.633	ENSSMAG00000010441	ddx55	95	53.633	Scophthalmus_maximus
ENSCSAVG00000003375	-	99	52.381	ENSSDUG00000023568	ddx55	97	52.041	Seriola_dumerili
ENSCSAVG00000003375	-	99	47.619	ENSSLDG00000011299	ddx55	96	47.279	Seriola_lalandi_dorsalis
ENSCSAVG00000003375	-	92	53.080	ENSSARG00000003842	DDX55	97	52.793	Sorex_araneus
ENSCSAVG00000003375	-	97	53.966	ENSSPUG00000012798	DDX55	96	53.448	Sphenodon_punctatus
ENSCSAVG00000003375	-	98	53.504	ENSSPAG00000011806	ddx55	96	53.504	Stegastes_partitus
ENSCSAVG00000003375	-	95	53.308	ENSSSCG00000009771	DDX55	93	55.238	Sus_scrofa
ENSCSAVG00000003375	-	96	53.472	ENSTGUG00000005302	-	95	53.217	Taeniopygia_guttata
ENSCSAVG00000003375	-	99	53.782	ENSTRUG00000018525	ddx55	98	53.445	Takifugu_rubripes
ENSCSAVG00000003375	-	99	51.818	ENSTNIG00000013515	DDX55	95	53.516	Tetraodon_nigroviridis
ENSCSAVG00000003375	-	81	51.562	ENSTBEG00000010822	DDX55	98	52.584	Tupaia_belangeri
ENSCSAVG00000003375	-	97	53.793	ENSTTRG00000007251	DDX55	95	53.688	Tursiops_truncatus
ENSCSAVG00000003375	-	97	52.577	ENSUAMG00000012589	DDX55	95	51.718	Ursus_americanus
ENSCSAVG00000003375	-	91	52.564	ENSUMAG00000003869	DDX55	96	51.648	Ursus_maritimus
ENSCSAVG00000003375	-	91	48.619	ENSVPAG00000007028	DDX55	96	48.352	Vicugna_pacos
ENSCSAVG00000003375	-	98	53.199	ENSVVUG00000027506	DDX55	97	55.020	Vulpes_vulpes
ENSCSAVG00000003375	-	97	51.646	ENSXETG00000005825	ddx55	95	51.646	Xenopus_tropicalis
ENSCSAVG00000003375	-	98	52.991	ENSXCOG00000010120	ddx55	98	52.991	Xiphophorus_couchianus
ENSCSAVG00000003375	-	98	53.675	ENSXMAG00000011731	ddx55	98	53.675	Xiphophorus_maculatus