EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000003505 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 6314 bases
Position: chrreftig_51:1076220-1082533
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000005867	MMR_HSR1	PF01926.23	1.7e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000005942	-	1627	-	ENSCSAVP00000005867	310 (aa)	-	H2YKL5
ENSCSAVT00000005943	-	1152	-	ENSCSAVP00000005868	331 (aa)	-	H2YKL6

Gene Model

Click here to download ENSCSAVG00000003505's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003505's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003505	-	96	82.943	ENSG00000155876	RRAGA	96	82.943	Homo_sapiens
ENSCSAVG00000003505	-	96	83.278	ENSG00000083750	RRAGB	99	85.492	Homo_sapiens
ENSCSAVG00000003505	-	96	82.943	ENSAPOG00000012140	rraga	95	82.943	Acanthochromis_polyacanthus
ENSCSAVG00000003505	-	96	82.609	ENSACIG00000013561	rraga	95	82.609	Amphilophus_citrinellus
ENSCSAVG00000003505	-	96	82.943	ENSAOCG00000002304	rraga	95	82.943	Amphiprion_ocellaris
ENSCSAVG00000003505	-	96	82.943	ENSAPEG00000006571	rraga	95	82.943	Amphiprion_percula
ENSCSAVG00000003505	-	96	82.943	ENSATEG00000011885	rraga	95	82.943	Anabas_testudineus
ENSCSAVG00000003505	-	96	82.609	ENSANAG00000031746	-	96	82.609	Aotus_nancymaae
ENSCSAVG00000003505	-	96	83.278	ENSANAG00000020912	RRAGB	86	83.278	Aotus_nancymaae
ENSCSAVG00000003505	-	96	82.943	ENSACLG00000010458	rraga	95	82.943	Astatotilapia_calliptera
ENSCSAVG00000003505	-	97	82.450	ENSAMXG00000030179	rraga	96	82.450	Astyanax_mexicanus
ENSCSAVG00000003505	-	96	83.278	ENSBTAG00000012980	RRAGB	96	83.051	Bos_taurus
ENSCSAVG00000003505	-	96	82.943	ENSBTAG00000033543	RRAGA	96	82.943	Bos_taurus
ENSCSAVG00000003505	-	96	82.609	ENSBTAG00000038064	-	96	82.609	Bos_taurus
ENSCSAVG00000003505	-	95	63.399	WBGene00006414	raga-1	98	63.399	Caenorhabditis_elegans
ENSCSAVG00000003505	-	96	81.940	ENSCJAG00000001550	-	96	81.940	Callithrix_jacchus
ENSCSAVG00000003505	-	96	83.278	ENSCJAG00000007317	RRAGB	86	83.278	Callithrix_jacchus
ENSCSAVG00000003505	-	96	82.943	ENSCJAG00000022413	-	91	82.943	Callithrix_jacchus
ENSCSAVG00000003505	-	96	83.278	ENSCAFG00020013782	RRAGB	86	83.278	Canis_lupus_dingo
ENSCSAVG00000003505	-	96	82.943	ENSCAFG00020012925	RRAGA	96	82.943	Canis_lupus_dingo
ENSCSAVG00000003505	-	96	83.278	ENSCHIG00000018786	RRAGB	95	83.051	Capra_hircus
ENSCSAVG00000003505	-	96	82.943	ENSCHIG00000004994	RRAGA	96	82.943	Capra_hircus
ENSCSAVG00000003505	-	96	83.278	ENSTSYG00000004397	RRAGB	86	83.278	Carlito_syrichta
ENSCSAVG00000003505	-	96	82.943	ENSCPOG00000008047	RRAGA	96	82.943	Cavia_porcellus
ENSCSAVG00000003505	-	95	81.356	ENSCPOG00000011266	RRAGB	96	81.356	Cavia_porcellus
ENSCSAVG00000003505	-	96	82.943	ENSCCAG00000000619	-	96	82.943	Cebus_capucinus
ENSCSAVG00000003505	-	96	83.278	ENSCCAG00000026742	RRAGB	86	83.278	Cebus_capucinus
ENSCSAVG00000003505	-	96	82.943	ENSCATG00000015913	RRAGA	96	82.943	Cercocebus_atys
ENSCSAVG00000003505	-	96	81.605	ENSCLAG00000003913	RRAGB	86	81.605	Chinchilla_lanigera
ENSCSAVG00000003505	-	96	82.943	ENSCLAG00000017884	RRAGA	96	82.943	Chinchilla_lanigera
ENSCSAVG00000003505	-	96	82.943	ENSCHOG00000001957	RRAGA	96	82.943	Choloepus_hoffmanni
ENSCSAVG00000003505	-	96	83.278	ENSCPBG00000010507	RRAGB	96	83.278	Chrysemys_picta_bellii
ENSCSAVG00000003505	-	99	94.194	ENSCING00000007876	-	98	94.194	Ciona_intestinalis
ENSCSAVG00000003505	-	96	82.943	ENSCANG00000038134	RRAGA	96	82.943	Colobus_angolensis_palliatus
ENSCSAVG00000003505	-	96	83.278	ENSCANG00000017510	RRAGB	86	83.278	Colobus_angolensis_palliatus
ENSCSAVG00000003505	-	96	82.943	ENSCGRG00001013394	Rragb	96	82.712	Cricetulus_griseus_chok1gshd
ENSCSAVG00000003505	-	94	82.474	ENSCGRG00000003443	Rraga	93	82.474	Cricetulus_griseus_crigri
ENSCSAVG00000003505	-	95	82.712	ENSCGRG00000006827	Rragb	96	82.712	Cricetulus_griseus_crigri
ENSCSAVG00000003505	-	96	82.943	ENSCSEG00000014142	rraga	95	82.943	Cynoglossus_semilaevis
ENSCSAVG00000003505	-	96	82.943	ENSCVAG00000021719	rraga	95	82.943	Cyprinodon_variegatus
ENSCSAVG00000003505	-	96	82.943	ENSDNOG00000015581	RRAGA	96	82.943	Dasypus_novemcinctus
ENSCSAVG00000003505	-	96	82.550	ENSDORG00000015932	Rragb	92	82.550	Dipodomys_ordii
ENSCSAVG00000003505	-	96	82.943	ENSDORG00000015994	Rraga	96	82.943	Dipodomys_ordii
ENSCSAVG00000003505	-	95	76.689	FBgn0037647	RagA-B	95	76.689	Drosophila_melanogaster
ENSCSAVG00000003505	-	95	81.695	ENSEBUG00000008941	rraga	82	81.940	Eptatretus_burgeri
ENSCSAVG00000003505	-	96	82.943	ENSEASG00005019266	RRAGA	88	82.943	Equus_asinus_asinus
ENSCSAVG00000003505	-	89	83.333	ENSEASG00005006973	RRAGB	81	83.333	Equus_asinus_asinus
ENSCSAVG00000003505	-	96	82.943	ENSECAG00000005729	RRAGA	88	82.943	Equus_caballus
ENSCSAVG00000003505	-	96	83.278	ENSECAG00000006020	RRAGB	86	83.278	Equus_caballus
ENSCSAVG00000003505	-	96	82.943	ENSEEUG00000009466	RRAGA	96	82.943	Erinaceus_europaeus
ENSCSAVG00000003505	-	96	82.943	ENSELUG00000009655	rraga	95	82.943	Esox_lucius
ENSCSAVG00000003505	-	96	82.943	ENSFCAG00000022742	RRAGA	96	82.943	Felis_catus
ENSCSAVG00000003505	-	96	83.278	ENSFCAG00000013932	RRAGB	86	83.278	Felis_catus
ENSCSAVG00000003505	-	96	82.943	ENSFALG00000011263	RRAGB	81	82.943	Ficedula_albicollis
ENSCSAVG00000003505	-	95	82.770	ENSFDAG00000018157	RRAGB	96	82.770	Fukomys_damarensis
ENSCSAVG00000003505	-	96	82.943	ENSFHEG00000002145	rraga	95	82.943	Fundulus_heteroclitus
ENSCSAVG00000003505	-	96	82.333	ENSGMOG00000004849	rraga	95	82.333	Gadus_morhua
ENSCSAVG00000003505	-	96	83.278	ENSGALG00000041226	RRAGB	96	83.278	Gallus_gallus
ENSCSAVG00000003505	-	96	82.943	ENSGAFG00000006618	rraga	96	82.943	Gambusia_affinis
ENSCSAVG00000003505	-	96	82.060	ENSGACG00000020342	rraga	97	82.373	Gasterosteus_aculeatus
ENSCSAVG00000003505	-	96	83.278	ENSGAGG00000012251	RRAGB	96	83.278	Gopherus_agassizii
ENSCSAVG00000003505	-	96	82.943	ENSGGOG00000021937	RRAGA	96	82.943	Gorilla_gorilla
ENSCSAVG00000003505	-	96	83.278	ENSGGOG00000011501	RRAGB	86	83.278	Gorilla_gorilla
ENSCSAVG00000003505	-	95	79.125	ENSHBUG00000004494	rraga	91	79.125	Haplochromis_burtoni
ENSCSAVG00000003505	-	96	82.943	ENSHGLG00000000313	RRAGB	96	82.432	Heterocephalus_glaber_female
ENSCSAVG00000003505	-	96	82.609	ENSHGLG00100020985	RRAGA	96	82.609	Heterocephalus_glaber_male
ENSCSAVG00000003505	-	96	82.943	ENSHCOG00000006819	rraga	95	82.943	Hippocampus_comes
ENSCSAVG00000003505	-	96	83.278	ENSIPUG00000014734	Rraga	95	83.278	Ictalurus_punctatus
ENSCSAVG00000003505	-	94	82.877	ENSSTOG00000004660	RRAGB	97	82.877	Ictidomys_tridecemlineatus
ENSCSAVG00000003505	-	96	82.943	ENSJJAG00000008212	Rraga	96	82.943	Jaculus_jaculus
ENSCSAVG00000003505	-	95	82.492	ENSJJAG00000021386	Rragb	95	82.492	Jaculus_jaculus
ENSCSAVG00000003505	-	96	82.943	ENSKMAG00000005709	rraga	95	82.943	Kryptolebias_marmoratus
ENSCSAVG00000003505	-	96	82.943	ENSLBEG00000004506	rraga	95	82.943	Labrus_bergylta
ENSCSAVG00000003505	-	96	82.943	ENSLACG00000016067	RRAGB	96	82.943	Latimeria_chalumnae
ENSCSAVG00000003505	-	96	83.278	ENSLOCG00000014979	rraga	95	83.278	Lepisosteus_oculatus
ENSCSAVG00000003505	-	96	83.278	ENSLAFG00000011082	RRAGA	96	83.278	Loxodonta_africana
ENSCSAVG00000003505	-	96	82.943	ENSMFAG00000030433	RRAGA	96	82.943	Macaca_fascicularis
ENSCSAVG00000003505	-	96	83.278	ENSMFAG00000041833	RRAGB	86	83.278	Macaca_fascicularis
ENSCSAVG00000003505	-	96	82.943	ENSMMUG00000018395	RRAGA	86	82.943	Macaca_mulatta
ENSCSAVG00000003505	-	95	82.770	ENSMMUG00000017635	RRAGB	96	82.770	Macaca_mulatta
ENSCSAVG00000003505	-	96	82.943	ENSMNEG00000019531	RRAGA	96	82.943	Macaca_nemestrina
ENSCSAVG00000003505	-	96	82.943	ENSMLEG00000025200	RRAGA	96	82.943	Mandrillus_leucophaeus
ENSCSAVG00000003505	-	96	83.278	ENSMLEG00000004971	RRAGB	86	83.278	Mandrillus_leucophaeus
ENSCSAVG00000003505	-	96	82.943	ENSMAMG00000012091	rraga	95	82.943	Mastacembelus_armatus
ENSCSAVG00000003505	-	96	82.943	ENSMZEG00005015085	rraga	95	82.943	Maylandia_zebra
ENSCSAVG00000003505	-	96	83.278	ENSMGAG00000005575	RRAGB	96	83.278	Meleagris_gallopavo
ENSCSAVG00000003505	-	96	82.943	ENSMAUG00000003702	Rraga	96	82.943	Mesocricetus_auratus
ENSCSAVG00000003505	-	96	82.943	ENSMICG00000016534	RRAGA	96	82.943	Microcebus_murinus
ENSCSAVG00000003505	-	96	83.278	ENSMICG00000035059	RRAGB	86	83.278	Microcebus_murinus
ENSCSAVG00000003505	-	95	83.051	ENSMOCG00000010568	Rragb	95	83.051	Microtus_ochrogaster
ENSCSAVG00000003505	-	96	82.886	ENSMODG00000011337	RRAGB	97	82.886	Monodelphis_domestica
ENSCSAVG00000003505	-	96	82.943	ENSMALG00000020662	rraga	95	82.943	Monopterus_albus
ENSCSAVG00000003505	-	96	82.943	MGP_CAROLIEiJ_G0026131	Rraga	96	82.943	Mus_caroli
ENSCSAVG00000003505	-	96	82.943	ENSMUSG00000070934	Rraga	96	82.943	Mus_musculus
ENSCSAVG00000003505	-	96	82.943	MGP_PahariEiJ_G0028469	Rraga	96	82.943	Mus_pahari
ENSCSAVG00000003505	-	96	82.943	MGP_SPRETEiJ_G0027096	Rraga	96	82.943	Mus_spretus
ENSCSAVG00000003505	-	96	82.943	ENSMPUG00000019121	RRAGA	96	82.943	Mustela_putorius_furo
ENSCSAVG00000003505	-	96	82.943	ENSMLUG00000010870	RRAGA	96	82.943	Myotis_lucifugus
ENSCSAVG00000003505	-	96	82.886	ENSNGAG00000015964	Rragb	96	82.886	Nannospalax_galili
ENSCSAVG00000003505	-	96	82.943	ENSNGAG00000007602	Rraga	96	82.943	Nannospalax_galili
ENSCSAVG00000003505	-	96	82.943	ENSNBRG00000016166	rraga	95	82.943	Neolamprologus_brichardi
ENSCSAVG00000003505	-	96	82.943	ENSNLEG00000018985	RRAGA	96	82.943	Nomascus_leucogenys
ENSCSAVG00000003505	-	96	83.278	ENSNLEG00000016350	RRAGB	86	83.278	Nomascus_leucogenys
ENSCSAVG00000003505	-	96	82.943	ENSOPRG00000005886	RRAGA	96	82.943	Ochotona_princeps
ENSCSAVG00000003505	-	95	82.095	ENSODEG00000002951	RRAGB	93	82.095	Octodon_degus
ENSCSAVG00000003505	-	96	83.278	ENSODEG00000020270	RRAGA	96	83.278	Octodon_degus
ENSCSAVG00000003505	-	96	82.943	ENSONIG00000004447	rraga	95	82.943	Oreochromis_niloticus
ENSCSAVG00000003505	-	59	86.339	ENSOANG00000031844	RRAGB	86	86.339	Ornithorhynchus_anatinus
ENSCSAVG00000003505	-	96	82.943	ENSOCUG00000003506	RRAGA	96	82.943	Oryctolagus_cuniculus
ENSCSAVG00000003505	-	96	82.943	ENSORLG00000009278	rraga	95	82.943	Oryzias_latipes
ENSCSAVG00000003505	-	96	82.943	ENSORLG00020001597	rraga	95	82.943	Oryzias_latipes_hni
ENSCSAVG00000003505	-	96	82.943	ENSORLG00015005697	rraga	95	82.943	Oryzias_latipes_hsok
ENSCSAVG00000003505	-	96	82.609	ENSOMEG00000005139	rraga	96	82.192	Oryzias_melastigma
ENSCSAVG00000003505	-	96	83.278	ENSOARG00000005619	RRAGB	86	83.278	Ovis_aries
ENSCSAVG00000003505	-	96	82.943	ENSOARG00000008644	RRAGA	95	82.943	Ovis_aries
ENSCSAVG00000003505	-	96	83.278	ENSPPAG00000034614	RRAGB	86	83.278	Pan_paniscus
ENSCSAVG00000003505	-	96	82.943	ENSPPAG00000012463	RRAGA	96	82.943	Pan_paniscus
ENSCSAVG00000003505	-	96	82.943	ENSPPRG00000021236	RRAGA	96	82.943	Panthera_pardus
ENSCSAVG00000003505	-	96	83.278	ENSPPRG00000021943	RRAGB	86	83.278	Panthera_pardus
ENSCSAVG00000003505	-	95	83.784	ENSPTIG00000005300	RRAGB	86	83.784	Panthera_tigris_altaica
ENSCSAVG00000003505	-	96	83.278	ENSPTRG00000021955	RRAGB	86	83.278	Pan_troglodytes
ENSCSAVG00000003505	-	96	82.943	ENSPTRG00000020798	RRAGA	88	82.943	Pan_troglodytes
ENSCSAVG00000003505	-	96	82.943	ENSPANG00000000085	RRAGA	96	82.943	Papio_anubis
ENSCSAVG00000003505	-	96	83.278	ENSPANG00000003594	RRAGB	86	83.278	Papio_anubis
ENSCSAVG00000003505	-	96	83.278	ENSPKIG00000021851	rraga	95	83.278	Paramormyrops_kingsleyae
ENSCSAVG00000003505	-	96	83.278	ENSPSIG00000012621	RRAGB	96	83.278	Pelodiscus_sinensis
ENSCSAVG00000003505	-	96	82.943	ENSPMGG00000009530	rraga	91	93.548	Periophthalmus_magnuspinnatus
ENSCSAVG00000003505	-	96	82.943	ENSPCIG00000010545	RRAGB	88	82.943	Phascolarctos_cinereus
ENSCSAVG00000003505	-	96	82.943	ENSPFOG00000019453	rraga	94	82.943	Poecilia_formosa
ENSCSAVG00000003505	-	96	82.943	ENSPLAG00000006541	rraga	95	82.943	Poecilia_latipinna
ENSCSAVG00000003505	-	96	82.943	ENSPMEG00000008057	rraga	95	82.943	Poecilia_mexicana
ENSCSAVG00000003505	-	96	82.943	ENSPREG00000021154	rraga	95	82.943	Poecilia_reticulata
ENSCSAVG00000003505	-	96	82.943	ENSPPYG00000019196	RRAGA	96	82.943	Pongo_abelii
ENSCSAVG00000003505	-	96	83.278	ENSPPYG00000020398	RRAGB	86	83.278	Pongo_abelii
ENSCSAVG00000003505	-	96	82.943	ENSPCAG00000003962	RRAGA	96	82.943	Procavia_capensis
ENSCSAVG00000003505	-	96	83.278	ENSPCOG00000009451	RRAGB	86	83.278	Propithecus_coquereli
ENSCSAVG00000003505	-	96	82.943	ENSPCOG00000013740	RRAGA	96	82.943	Propithecus_coquereli
ENSCSAVG00000003505	-	96	82.943	ENSPNYG00000021130	rraga	95	82.943	Pundamilia_nyererei
ENSCSAVG00000003505	-	96	79.933	ENSPNAG00000011028	rraga	95	80.333	Pygocentrus_nattereri
ENSCSAVG00000003505	-	96	82.943	ENSRNOG00000007051	Rraga	96	82.943	Rattus_norvegicus
ENSCSAVG00000003505	-	96	82.943	ENSRBIG00000003572	RRAGA	96	82.943	Rhinopithecus_bieti
ENSCSAVG00000003505	-	89	71.377	ENSRBIG00000031864	RRAGB	87	71.377	Rhinopithecus_bieti
ENSCSAVG00000003505	-	96	82.943	ENSRROG00000002426	RRAGA	96	82.943	Rhinopithecus_roxellana
ENSCSAVG00000003505	-	94	50.325	YML121W	-	98	50.325	Saccharomyces_cerevisiae
ENSCSAVG00000003505	-	96	83.278	ENSSBOG00000012810	RRAGB	86	83.278	Saimiri_boliviensis_boliviensis
ENSCSAVG00000003505	-	96	82.943	ENSSBOG00000008170	-	96	82.943	Saimiri_boliviensis_boliviensis
ENSCSAVG00000003505	-	96	82.943	ENSSHAG00000001266	-	88	82.943	Sarcophilus_harrisii
ENSCSAVG00000003505	-	96	83.278	ENSSFOG00015011428	rraga	95	83.278	Scleropages_formosus
ENSCSAVG00000003505	-	96	82.943	ENSSMAG00000017797	rraga	95	82.943	Scophthalmus_maximus
ENSCSAVG00000003505	-	96	82.943	ENSSDUG00000014535	rraga	95	82.943	Seriola_dumerili
ENSCSAVG00000003505	-	96	82.943	ENSSLDG00000014834	rraga	95	82.943	Seriola_lalandi_dorsalis
ENSCSAVG00000003505	-	95	82.373	ENSSPUG00000019253	RRAGB	97	82.373	Sphenodon_punctatus
ENSCSAVG00000003505	-	96	82.943	ENSSPAG00000009979	rraga	95	82.943	Stegastes_partitus
ENSCSAVG00000003505	-	96	83.278	ENSSSCG00000037228	RRAGB	91	83.278	Sus_scrofa
ENSCSAVG00000003505	-	96	82.943	ENSSSCG00000005174	RRAGA	96	82.943	Sus_scrofa
ENSCSAVG00000003505	-	96	82.943	ENSTGUG00000005543	RRAGB	95	82.943	Taeniopygia_guttata
ENSCSAVG00000003505	-	96	83.278	ENSTRUG00000013796	rraga	95	83.278	Takifugu_rubripes
ENSCSAVG00000003505	-	96	83.278	ENSTNIG00000011814	rraga	95	83.278	Tetraodon_nigroviridis
ENSCSAVG00000003505	-	96	82.886	ENSUAMG00000001776	RRAGA	97	82.886	Ursus_americanus
ENSCSAVG00000003505	-	96	83.278	ENSUAMG00000004721	RRAGB	86	83.278	Ursus_americanus
ENSCSAVG00000003505	-	96	83.278	ENSUMAG00000024099	RRAGB	86	83.278	Ursus_maritimus
ENSCSAVG00000003505	-	96	82.943	ENSVVUG00000000604	RRAGA	87	82.943	Vulpes_vulpes
ENSCSAVG00000003505	-	89	83.333	ENSVVUG00000015486	RRAGB	73	83.333	Vulpes_vulpes
ENSCSAVG00000003505	-	96	82.943	ENSXETG00000000887	rraga	96	82.943	Xenopus_tropicalis
ENSCSAVG00000003505	-	96	82.943	ENSXMAG00000012105	rraga	95	82.943	Xiphophorus_maculatus