EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000003533 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 12746 bases
Position: chrreftig_77:1008359-1021104
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000005921	RRM_1	PF00076.22	2.1e-31	1	2
ENSCSAVP00000005921	RRM_1	PF00076.22	2.1e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000005996	-	1668	-	ENSCSAVP00000005921	528 (aa)	-	H2YKR9

Gene Model

Click here to download ENSCSAVG00000003533's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003533's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003533	-	53	61.786	ENSG00000121390	PSPC1	78	58.766	Homo_sapiens
ENSCSAVG00000003533	-	52	61.372	ENSAPOG00000015946	pspc1	59	60.714	Acanthochromis_polyacanthus
ENSCSAVG00000003533	-	59	57.419	ENSAMEG00000017420	PSPC1	59	58.766	Ailuropoda_melanoleuca
ENSCSAVG00000003533	-	52	61.372	ENSAOCG00000005279	pspc1	59	60.630	Amphiprion_ocellaris
ENSCSAVG00000003533	-	52	61.372	ENSAPEG00000015927	pspc1	59	60.630	Amphiprion_percula
ENSCSAVG00000003533	-	50	57.736	ENSAPLG00000006246	PSPC1	65	59.542	Anas_platyrhynchos
ENSCSAVG00000003533	-	57	56.731	ENSAPLG00000003643	SFPQ	57	58.249	Anas_platyrhynchos
ENSCSAVG00000003533	-	59	58.599	ENSACAG00000002093	PSPC1	59	60.129	Anolis_carolinensis
ENSCSAVG00000003533	-	63	55.917	ENSANAG00000000059	PSPC1	73	61.053	Aotus_nancymaae
ENSCSAVG00000003533	-	52	61.372	ENSAMXG00000036881	pspc1	55	59.794	Astyanax_mexicanus
ENSCSAVG00000003533	-	53	61.429	ENSBTAG00000003934	PSPC1	59	58.442	Bos_taurus
ENSCSAVG00000003533	-	57	58.553	ENSCJAG00000004554	PSPC1	59	58.766	Callithrix_jacchus
ENSCSAVG00000003533	-	53	61.786	ENSCAFG00020002009	PSPC1	79	58.766	Canis_lupus_dingo
ENSCSAVG00000003533	-	53	61.429	ENSCHIG00000016708	PSPC1	59	58.442	Capra_hircus
ENSCSAVG00000003533	-	53	61.786	ENSCPOG00000000395	PSPC1	79	58.766	Cavia_porcellus
ENSCSAVG00000003533	-	57	58.553	ENSCCAG00000033498	PSPC1	59	58.766	Cebus_capucinus
ENSCSAVG00000003533	-	53	61.786	ENSCATG00000036434	PSPC1	85	58.766	Cercocebus_atys
ENSCSAVG00000003533	-	53	61.786	ENSCHOG00000008913	PSPC1	59	58.766	Choloepus_hoffmanni
ENSCSAVG00000003533	-	59	58.599	ENSCPBG00000020859	PSPC1	59	60.129	Chrysemys_picta_bellii
ENSCSAVG00000003533	-	58	58.306	ENSCGRG00001018368	Pspc1	59	58.766	Cricetulus_griseus_chok1gshd
ENSCSAVG00000003533	-	58	58.306	ENSCGRG00000011724	Pspc1	59	58.766	Cricetulus_griseus_crigri
ENSCSAVG00000003533	-	53	62.590	ENSCVAG00000007679	-	60	59.868	Cyprinodon_variegatus
ENSCSAVG00000003533	-	60	55.692	ENSDARG00000006621	pspc1	62	58.730	Danio_rerio
ENSCSAVG00000003533	-	53	61.786	ENSDNOG00000011078	PSPC1	63	55.891	Dasypus_novemcinctus
ENSCSAVG00000003533	-	53	58.929	ENSDORG00000016050	Pspc1	58	56.169	Dipodomys_ordii
ENSCSAVG00000003533	-	80	45.319	ENSEBUG00000003964	-	56	59.744	Eptatretus_burgeri
ENSCSAVG00000003533	-	53	61.786	ENSEASG00005000119	PSPC1	79	58.766	Equus_asinus_asinus
ENSCSAVG00000003533	-	53	61.786	ENSECAG00000017286	PSPC1	79	58.766	Equus_caballus
ENSCSAVG00000003533	-	53	61.151	ENSELUG00000003746	pspc1	74	58.117	Esox_lucius
ENSCSAVG00000003533	-	53	61.786	ENSFCAG00000027841	PSPC1	79	58.766	Felis_catus
ENSCSAVG00000003533	-	59	58.599	ENSFALG00000008750	PSPC1	59	60.129	Ficedula_albicollis
ENSCSAVG00000003533	-	53	61.786	ENSFDAG00000002617	PSPC1	60	58.766	Fukomys_damarensis
ENSCSAVG00000003533	-	53	60.000	ENSGMOG00000015074	pspc1	54	60.000	Gadus_morhua
ENSCSAVG00000003533	-	59	58.599	ENSGALG00000017142	PSPC1	59	60.129	Gallus_gallus
ENSCSAVG00000003533	-	53	60.072	ENSGAFG00000006327	pspc1	64	57.143	Gambusia_affinis
ENSCSAVG00000003533	-	53	55.755	ENSGACG00000014901	pspc1	80	54.861	Gasterosteus_aculeatus
ENSCSAVG00000003533	-	59	58.599	ENSGAGG00000019164	PSPC1	59	60.129	Gopherus_agassizii
ENSCSAVG00000003533	-	53	61.786	ENSGGOG00000003414	PSPC1	78	58.766	Gorilla_gorilla
ENSCSAVG00000003533	-	53	59.712	ENSHBUG00000001139	pspc1	56	58.419	Haplochromis_burtoni
ENSCSAVG00000003533	-	58	57.655	ENSHGLG00000018811	PSPC1	59	58.766	Heterocephalus_glaber_female
ENSCSAVG00000003533	-	53	61.786	ENSHGLG00100007962	PSPC1	85	61.786	Heterocephalus_glaber_male
ENSCSAVG00000003533	-	54	54.196	ENSHCOG00000013251	pspc1	65	53.401	Hippocampus_comes
ENSCSAVG00000003533	-	57	58.306	ENSIPUG00000013192	pspc1	55	61.168	Ictalurus_punctatus
ENSCSAVG00000003533	-	58	57.655	ENSSTOG00000026833	PSPC1	78	58.766	Ictidomys_tridecemlineatus
ENSCSAVG00000003533	-	53	61.786	ENSJJAG00000018334	Pspc1	55	60.417	Jaculus_jaculus
ENSCSAVG00000003533	-	64	48.083	ENSKMAG00000013525	-	64	51.429	Kryptolebias_marmoratus
ENSCSAVG00000003533	-	53	57.554	ENSLBEG00000004474	pspc1	62	56.357	Labrus_bergylta
ENSCSAVG00000003533	-	53	61.071	ENSLACG00000010762	PSPC1	59	58.842	Latimeria_chalumnae
ENSCSAVG00000003533	-	53	61.871	ENSLOCG00000010832	pspc1	60	59.740	Lepisosteus_oculatus
ENSCSAVG00000003533	-	53	61.786	ENSLAFG00000010968	PSPC1	63	55.723	Loxodonta_africana
ENSCSAVG00000003533	-	53	61.786	ENSMFAG00000032728	PSPC1	86	58.766	Macaca_fascicularis
ENSCSAVG00000003533	-	53	61.786	ENSMMUG00000020262	PSPC1	83	58.766	Macaca_mulatta
ENSCSAVG00000003533	-	53	61.786	ENSMNEG00000027401	PSPC1	65	58.766	Macaca_nemestrina
ENSCSAVG00000003533	-	53	57.194	ENSMAMG00000004333	pspc1	58	55.049	Mastacembelus_armatus
ENSCSAVG00000003533	-	50	57.303	ENSMGAG00000015134	PSPC1	65	59.091	Meleagris_gallopavo
ENSCSAVG00000003533	-	64	52.663	ENSMAUG00000021067	Pspc1	69	55.128	Mesocricetus_auratus
ENSCSAVG00000003533	-	53	61.786	ENSMICG00000013970	PSPC1	79	58.766	Microcebus_murinus
ENSCSAVG00000003533	-	58	58.632	ENSMOCG00000006060	Pspc1	62	56.575	Microtus_ochrogaster
ENSCSAVG00000003533	-	55	44.138	ENSMMOG00000004352	pspc1	53	44.674	Mola_mola
ENSCSAVG00000003533	-	53	61.786	ENSMODG00000008029	PSPC1	50	58.766	Monodelphis_domestica
ENSCSAVG00000003533	-	53	59.712	ENSMALG00000008914	pspc1	57	58.076	Monopterus_albus
ENSCSAVG00000003533	-	64	55.882	MGP_CAROLIEiJ_G0019341	Pspc1	91	58.491	Mus_caroli
ENSCSAVG00000003533	-	64	55.882	ENSMUSG00000021938	Pspc1	90	58.491	Mus_musculus
ENSCSAVG00000003533	-	64	55.882	MGP_PahariEiJ_G0030359	Pspc1	91	58.491	Mus_pahari
ENSCSAVG00000003533	-	64	55.882	MGP_SPRETEiJ_G0020232	Pspc1	91	58.491	Mus_spretus
ENSCSAVG00000003533	-	53	61.786	ENSMPUG00000013347	PSPC1	59	58.766	Mustela_putorius_furo
ENSCSAVG00000003533	-	53	61.131	ENSMLUG00000017663	PSPC1	59	58.199	Myotis_lucifugus
ENSCSAVG00000003533	-	58	58.632	ENSNGAG00000011271	Pspc1	59	58.766	Nannospalax_galili
ENSCSAVG00000003533	-	53	61.786	ENSNLEG00000001294	PSPC1	59	58.766	Nomascus_leucogenys
ENSCSAVG00000003533	-	53	59.712	ENSONIG00000012010	pspc1	56	58.419	Oreochromis_niloticus
ENSCSAVG00000003533	-	57	51.325	ENSOANG00000011381	-	57	54.874	Ornithorhynchus_anatinus
ENSCSAVG00000003533	-	53	61.786	ENSOCUG00000006153	PSPC1	59	58.766	Oryctolagus_cuniculus
ENSCSAVG00000003533	-	81	45.714	ENSORLG00000004232	-	86	44.493	Oryzias_latipes
ENSCSAVG00000003533	-	81	45.495	ENSORLG00020000578	PSPC1	86	45.033	Oryzias_latipes_hni
ENSCSAVG00000003533	-	53	58.865	ENSORLG00015017480	pspc1	58	57.627	Oryzias_latipes_hsok
ENSCSAVG00000003533	-	53	61.786	ENSOGAG00000012643	PSPC1	59	58.766	Otolemur_garnettii
ENSCSAVG00000003533	-	53	61.649	ENSOARG00000014163	PSPC1	64	58.065	Ovis_aries
ENSCSAVG00000003533	-	53	61.786	ENSPPAG00000009836	PSPC1	87	58.766	Pan_paniscus
ENSCSAVG00000003533	-	53	61.786	ENSPPRG00000008833	PSPC1	59	58.766	Panthera_pardus
ENSCSAVG00000003533	-	53	61.786	ENSPTRG00000005677	PSPC1	78	58.766	Pan_troglodytes
ENSCSAVG00000003533	-	53	61.786	ENSPANG00000001992	PSPC1	84	58.766	Papio_anubis
ENSCSAVG00000003533	-	53	62.590	ENSPKIG00000003578	pspc1	56	61.168	Paramormyrops_kingsleyae
ENSCSAVG00000003533	-	59	57.325	ENSPSIG00000005168	PSPC1	59	58.842	Pelodiscus_sinensis
ENSCSAVG00000003533	-	54	54.930	ENSPMGG00000015135	pspc1	78	54.930	Periophthalmus_magnuspinnatus
ENSCSAVG00000003533	-	58	58.632	ENSPEMG00000015214	Pspc1	59	58.766	Peromyscus_maniculatus_bairdii
ENSCSAVG00000003533	-	53	61.786	ENSPCIG00000017680	PSPC1	59	58.766	Phascolarctos_cinereus
ENSCSAVG00000003533	-	53	60.791	ENSPFOG00000003362	pspc1	60	57.792	Poecilia_formosa
ENSCSAVG00000003533	-	53	60.791	ENSPLAG00000011540	pspc1	59	57.792	Poecilia_latipinna
ENSCSAVG00000003533	-	53	60.432	ENSPMEG00000008322	pspc1	59	57.468	Poecilia_mexicana
ENSCSAVG00000003533	-	53	60.432	ENSPREG00000007786	pspc1	60	57.282	Poecilia_reticulata
ENSCSAVG00000003533	-	53	61.786	ENSPPYG00000005186	PSPC1	65	58.766	Pongo_abelii
ENSCSAVG00000003533	-	83	46.895	ENSPCOG00000014364	PSPC1	61	58.766	Propithecus_coquereli
ENSCSAVG00000003533	-	53	61.429	ENSPVAG00000005036	PSPC1	59	58.442	Pteropus_vampyrus
ENSCSAVG00000003533	-	57	58.882	ENSRNOG00000020782	Pspc1	66	58.766	Rattus_norvegicus
ENSCSAVG00000003533	-	58	58.199	ENSRBIG00000036057	PSPC1	86	58.766	Rhinopithecus_bieti
ENSCSAVG00000003533	-	58	58.065	ENSRROG00000036334	PSPC1	78	58.766	Rhinopithecus_roxellana
ENSCSAVG00000003533	-	53	60.791	ENSSFOG00015001395	pspc1	61	59.722	Scleropages_formosus
ENSCSAVG00000003533	-	68	49.171	ENSSMAG00000001761	pspc1	78	53.165	Scophthalmus_maximus
ENSCSAVG00000003533	-	53	58.633	ENSSDUG00000010651	pspc1	54	57.388	Seriola_dumerili
ENSCSAVG00000003533	-	53	61.151	ENSSPAG00000001921	pspc1	55	59.794	Stegastes_partitus
ENSCSAVG00000003533	-	53	61.429	ENSSSCG00000009569	PSPC1	79	58.442	Sus_scrofa
ENSCSAVG00000003533	-	59	58.599	ENSTGUG00000011295	PSPC1	66	60.129	Taeniopygia_guttata
ENSCSAVG00000003533	-	52	57.091	ENSTRUG00000011335	pspc1	56	55.903	Takifugu_rubripes
ENSCSAVG00000003533	-	52	54.909	ENSTNIG00000010358	pspc1	60	54.035	Tetraodon_nigroviridis
ENSCSAVG00000003533	-	52	55.435	ENSTBEG00000002361	PSPC1	65	49.851	Tupaia_belangeri
ENSCSAVG00000003533	-	53	61.429	ENSTTRG00000003343	PSPC1	59	58.442	Tursiops_truncatus
ENSCSAVG00000003533	-	59	57.419	ENSUAMG00000012309	PSPC1	80	61.786	Ursus_americanus
ENSCSAVG00000003533	-	59	57.097	ENSUMAG00000013993	PSPC1	86	58.442	Ursus_maritimus
ENSCSAVG00000003533	-	53	61.786	ENSVVUG00000006414	PSPC1	80	58.766	Vulpes_vulpes
ENSCSAVG00000003533	-	53	58.993	ENSXCOG00000017438	pspc1	68	57.986	Xiphophorus_couchianus
ENSCSAVG00000003533	-	53	59.353	ENSXMAG00000007929	pspc1	73	56.494	Xiphophorus_maculatus