EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000003537 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 9195 bases
Position: chrreftig_73:37968-47162
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000005929	MA3	PF02847.17	4.6e-23	1	1
ENSCSAVP00000005928	MA3	PF02847.17	1.7e-22	1	1
ENSCSAVP00000005927	MA3	PF02847.17	2e-22	1	1
ENSCSAVP00000005927	MIF4G	PF02854.19	7.6e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000006002	-	2521	-	ENSCSAVP00000005927	810 (aa)	-	H2YKS5
ENSCSAVT00000006003	-	2271	-	ENSCSAVP00000005928	757 (aa)	-	H2YKS6
ENSCSAVT00000006004	-	807	-	ENSCSAVP00000005929	263 (aa)	-	H2YKS7

Gene Model

Click here to download ENSCSAVG00000003537's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003537's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003537	-	83	72.273	ENSG00000163510	CWC22	73	67.582	Homo_sapiens
ENSCSAVG00000003537	-	78	68.293	ENSAPOG00000004200	cwc22	78	53.434	Acanthochromis_polyacanthus
ENSCSAVG00000003537	-	83	73.059	ENSAMEG00000011004	CWC22	61	66.126	Ailuropoda_melanoleuca
ENSCSAVG00000003537	-	78	76.098	ENSACIG00000020055	cwc22	64	66.845	Amphilophus_citrinellus
ENSCSAVG00000003537	-	77	74.877	ENSAPEG00000002673	cwc22	55	68.460	Amphiprion_percula
ENSCSAVG00000003537	-	77	75.369	ENSATEG00000005176	cwc22	75	56.430	Anabas_testudineus
ENSCSAVG00000003537	-	81	73.023	ENSACAG00000009438	CWC22	62	65.350	Anolis_carolinensis
ENSCSAVG00000003537	-	83	72.273	ENSANAG00000028324	CWC22	59	67.468	Aotus_nancymaae
ENSCSAVG00000003537	-	78	75.610	ENSACLG00000025447	cwc22	77	68.148	Astatotilapia_calliptera
ENSCSAVG00000003537	-	77	74.384	ENSAMXG00000014957	cwc22	52	74.146	Astyanax_mexicanus
ENSCSAVG00000003537	-	83	72.603	ENSBTAG00000021726	CWC22	60	67.837	Bos_taurus
ENSCSAVG00000003537	-	92	47.431	WBGene00002957	let-858	61	51.818	Caenorhabditis_elegans
ENSCSAVG00000003537	-	83	72.603	ENSCAFG00000014160	CWC22	59	67.837	Canis_familiaris
ENSCSAVG00000003537	-	83	72.603	ENSCAFG00020007223	CWC22	66	66.667	Canis_lupus_dingo
ENSCSAVG00000003537	-	83	72.603	ENSCHIG00000017150	CWC22	60	67.098	Capra_hircus
ENSCSAVG00000003537	-	83	65.455	ENSTSYG00000026635	-	62	58.470	Carlito_syrichta
ENSCSAVG00000003537	-	83	65.909	ENSTSYG00000028686	-	64	59.246	Carlito_syrichta
ENSCSAVG00000003537	-	83	72.727	ENSTSYG00000000218	-	61	66.906	Carlito_syrichta
ENSCSAVG00000003537	-	83	63.636	ENSCAPG00000002064	CWC22	65	62.612	Cavia_aperea
ENSCSAVG00000003537	-	83	72.727	ENSCPOG00000007492	CWC22	62	66.847	Cavia_porcellus
ENSCSAVG00000003537	-	98	51.134	ENSCCAG00000021239	CWC22	60	62.410	Cebus_capucinus
ENSCSAVG00000003537	-	83	72.273	ENSCATG00000035788	CWC22	59	68.022	Cercocebus_atys
ENSCSAVG00000003537	-	83	72.727	ENSCLAG00000011118	CWC22	61	67.027	Chinchilla_lanigera
ENSCSAVG00000003537	-	83	72.273	ENSCSAG00000012925	CWC22	59	68.022	Chlorocebus_sabaeus
ENSCSAVG00000003537	-	83	72.727	ENSCHOG00000006362	CWC22	62	58.111	Choloepus_hoffmanni
ENSCSAVG00000003537	-	78	74.634	ENSCPBG00000001765	CWC22	60	66.481	Chrysemys_picta_bellii
ENSCSAVG00000003537	-	97	77.736	ENSCING00000008865	-	90	76.371	Ciona_intestinalis
ENSCSAVG00000003537	-	83	72.273	ENSCANG00000013762	CWC22	62	66.727	Colobus_angolensis_palliatus
ENSCSAVG00000003537	-	83	72.727	ENSCGRG00001017005	-	77	66.308	Cricetulus_griseus_chok1gshd
ENSCSAVG00000003537	-	83	72.727	ENSCGRG00000001934	-	61	66.427	Cricetulus_griseus_crigri
ENSCSAVG00000003537	-	77	70.098	ENSCSEG00000005257	cwc22	59	61.039	Cynoglossus_semilaevis
ENSCSAVG00000003537	-	77	75.369	ENSCVAG00000009836	cwc22	53	68.773	Cyprinodon_variegatus
ENSCSAVG00000003537	-	77	75.369	ENSDARG00000014008	cwc22	55	67.159	Danio_rerio
ENSCSAVG00000003537	-	83	55.909	ENSDNOG00000032640	-	78	53.405	Dasypus_novemcinctus
ENSCSAVG00000003537	-	83	72.273	ENSDNOG00000003020	-	59	68.207	Dasypus_novemcinctus
ENSCSAVG00000003537	-	84	72.072	ENSDORG00000011483	-	61	66.187	Dipodomys_ordii
ENSCSAVG00000003537	-	83	53.636	ENSETEG00000013355	CWC22	76	57.692	Echinops_telfairi
ENSCSAVG00000003537	-	92	68.443	ENSEASG00005022287	CWC22	59	68.022	Equus_asinus_asinus
ENSCSAVG00000003537	-	92	68.443	ENSECAG00000010769	CWC22	59	68.022	Equus_caballus
ENSCSAVG00000003537	-	83	72.603	ENSEEUG00000005336	CWC22	53	67.669	Erinaceus_europaeus
ENSCSAVG00000003537	-	82	70.968	ENSELUG00000010536	cwc22	88	63.158	Esox_lucius
ENSCSAVG00000003537	-	92	68.443	ENSFCAG00000018982	CWC22	59	67.283	Felis_catus
ENSCSAVG00000003537	-	83	71.233	ENSFALG00000003495	CWC22	59	65.306	Ficedula_albicollis
ENSCSAVG00000003537	-	83	72.727	ENSFDAG00000010857	CWC22	61	66.848	Fukomys_damarensis
ENSCSAVG00000003537	-	77	74.384	ENSFHEG00000009620	cwc22	54	67.347	Fundulus_heteroclitus
ENSCSAVG00000003537	-	84	67.873	ENSGMOG00000009084	cwc22	88	64.982	Gadus_morhua
ENSCSAVG00000003537	-	78	74.634	ENSGALG00000009001	CWC22	58	66.111	Gallus_gallus
ENSCSAVG00000003537	-	78	74.634	ENSGAFG00000021155	cwc22	65	68.333	Gambusia_affinis
ENSCSAVG00000003537	-	83	70.320	ENSGACG00000002071	cwc22	67	66.787	Gasterosteus_aculeatus
ENSCSAVG00000003537	-	78	75.122	ENSGAGG00000013471	CWC22	59	66.976	Gopherus_agassizii
ENSCSAVG00000003537	-	83	72.273	ENSGGOG00000012484	CWC22	61	66.727	Gorilla_gorilla
ENSCSAVG00000003537	-	98	62.738	ENSHBUG00000010504	cwc22	61	67.730	Haplochromis_burtoni
ENSCSAVG00000003537	-	83	72.727	ENSHGLG00000005692	CWC22	62	66.976	Heterocephalus_glaber_female
ENSCSAVG00000003537	-	83	72.727	ENSHGLG00100016497	CWC22	79	66.302	Heterocephalus_glaber_male
ENSCSAVG00000003537	-	78	72.683	ENSHCOG00000004206	cwc22	64	66.419	Hippocampus_comes
ENSCSAVG00000003537	-	91	67.220	ENSIPUG00000005831	cwc22	58	67.407	Ictalurus_punctatus
ENSCSAVG00000003537	-	83	72.273	ENSSTOG00000009788	CWC22	61	66.667	Ictidomys_tridecemlineatus
ENSCSAVG00000003537	-	83	72.273	ENSJJAG00000017012	-	61	66.187	Jaculus_jaculus
ENSCSAVG00000003537	-	77	75.369	ENSKMAG00000005228	cwc22	54	68.704	Kryptolebias_marmoratus
ENSCSAVG00000003537	-	77	73.892	ENSLBEG00000020518	cwc22	61	66.990	Labrus_bergylta
ENSCSAVG00000003537	-	95	61.397	ENSLOCG00000006456	cwc22	58	65.225	Lepisosteus_oculatus
ENSCSAVG00000003537	-	78	76.098	ENSLAFG00000014802	CWC22	59	67.897	Loxodonta_africana
ENSCSAVG00000003537	-	83	72.273	ENSMFAG00000000590	CWC22	65	66.310	Macaca_fascicularis
ENSCSAVG00000003537	-	83	72.273	ENSMMUG00000020642	CWC22	62	67.582	Macaca_mulatta
ENSCSAVG00000003537	-	83	72.273	ENSMNEG00000034567	CWC22	62	66.727	Macaca_nemestrina
ENSCSAVG00000003537	-	83	72.273	ENSMLEG00000042344	CWC22	62	66.727	Mandrillus_leucophaeus
ENSCSAVG00000003537	-	77	75.369	ENSMAMG00000018888	cwc22	57	64.948	Mastacembelus_armatus
ENSCSAVG00000003537	-	77	75.862	ENSMZEG00005021449	cwc22	53	68.148	Maylandia_zebra
ENSCSAVG00000003537	-	78	74.634	ENSMGAG00000009220	CWC22	60	66.419	Meleagris_gallopavo
ENSCSAVG00000003537	-	83	73.182	ENSMAUG00000016154	-	62	66.245	Mesocricetus_auratus
ENSCSAVG00000003537	-	83	72.273	ENSMICG00000016919	CWC22	62	66.607	Microcebus_murinus
ENSCSAVG00000003537	-	69	73.626	ENSMMOG00000019720	cwc22	74	66.279	Mola_mola
ENSCSAVG00000003537	-	78	75.610	ENSMODG00000010233	-	60	67.642	Monodelphis_domestica
ENSCSAVG00000003537	-	79	70.335	ENSMODG00000020117	-	99	64.325	Monodelphis_domestica
ENSCSAVG00000003537	-	79	70.048	ENSMODG00000003711	-	97	64.662	Monodelphis_domestica
ENSCSAVG00000003537	-	83	73.182	MGP_CAROLIEiJ_G0023696	-	76	66.487	Mus_caroli
ENSCSAVG00000003537	-	83	72.273	ENSMUSG00000094336	Gm13693	67	65.364	Mus_musculus
ENSCSAVG00000003537	-	83	72.273	ENSMUSG00000079247	Gm13691	67	65.364	Mus_musculus
ENSCSAVG00000003537	-	83	72.273	ENSMUSG00000096337	Gm13694	67	65.364	Mus_musculus
ENSCSAVG00000003537	-	83	73.182	ENSMUSG00000027014	Cwc22	77	66.667	Mus_musculus
ENSCSAVG00000003537	-	83	72.273	ENSMUSG00000096729	Gm13695	67	65.187	Mus_musculus
ENSCSAVG00000003537	-	83	72.273	ENSMUSG00000095824	Gm13697	67	65.364	Mus_musculus
ENSCSAVG00000003537	-	83	72.273	ENSMUSG00000096484	Gm13696	67	65.364	Mus_musculus
ENSCSAVG00000003537	-	83	72.273	ENSMUSG00000094125	Gm13698	67	65.364	Mus_musculus
ENSCSAVG00000003537	-	83	73.182	MGP_PahariEiJ_G0025147	-	75	66.487	Mus_pahari
ENSCSAVG00000003537	-	83	72.603	ENSMPUG00000002432	CWC22	59	67.837	Mustela_putorius_furo
ENSCSAVG00000003537	-	83	72.603	ENSMLUG00000013437	-	66	66.126	Myotis_lucifugus
ENSCSAVG00000003537	-	83	71.233	ENSMLUG00000024966	-	68	66.484	Myotis_lucifugus
ENSCSAVG00000003537	-	99	50.643	ENSNGAG00000013881	-	78	64.683	Nannospalax_galili
ENSCSAVG00000003537	-	83	72.273	ENSNLEG00000006248	CWC22	59	68.022	Nomascus_leucogenys
ENSCSAVG00000003537	-	75	72.449	ENSMEUG00000011026	CWC22	95	62.384	Notamacropus_eugenii
ENSCSAVG00000003537	-	83	71.233	ENSOPRG00000007844	CWC22	56	66.449	Ochotona_princeps
ENSCSAVG00000003537	-	83	68.610	ENSODEG00000007673	CWC22	86	64.498	Octodon_degus
ENSCSAVG00000003537	-	83	68.037	ENSODEG00000005934	-	72	61.853	Octodon_degus
ENSCSAVG00000003537	-	83	72.146	ENSOANG00000008649	CWC22	66	68.235	Ornithorhynchus_anatinus
ENSCSAVG00000003537	-	96	65.267	ENSORLG00000010538	cwc22	57	67.472	Oryzias_latipes
ENSCSAVG00000003537	-	77	74.877	ENSORLG00020015117	cwc22	62	65.068	Oryzias_latipes_hni
ENSCSAVG00000003537	-	77	74.877	ENSORLG00015018073	cwc22	57	68.224	Oryzias_latipes_hsok
ENSCSAVG00000003537	-	92	67.490	ENSOMEG00000015199	cwc22	74	58.169	Oryzias_melastigma
ENSCSAVG00000003537	-	83	72.727	ENSOGAG00000015287	CWC22	61	67.266	Otolemur_garnettii
ENSCSAVG00000003537	-	83	72.603	ENSOARG00000016905	CWC22	60	67.837	Ovis_aries
ENSCSAVG00000003537	-	83	72.273	ENSPPAG00000027833	CWC22	61	66.906	Pan_paniscus
ENSCSAVG00000003537	-	92	68.443	ENSPPRG00000001389	CWC22	59	68.022	Panthera_pardus
ENSCSAVG00000003537	-	92	68.443	ENSPTIG00000019139	CWC22	59	68.022	Panthera_tigris_altaica
ENSCSAVG00000003537	-	83	72.273	ENSPTRG00000012698	CWC22	59	68.022	Pan_troglodytes
ENSCSAVG00000003537	-	83	72.273	ENSPANG00000018976	CWC22	62	66.727	Papio_anubis
ENSCSAVG00000003537	-	77	75.862	ENSPKIG00000021346	cwc22	63	64.474	Paramormyrops_kingsleyae
ENSCSAVG00000003537	-	83	71.233	ENSPSIG00000008632	CWC22	64	62.823	Pelodiscus_sinensis
ENSCSAVG00000003537	-	77	67.980	ENSPMGG00000020129	cwc22	55	63.519	Periophthalmus_magnuspinnatus
ENSCSAVG00000003537	-	84	72.197	ENSPEMG00000023936	-	80	63.766	Peromyscus_maniculatus_bairdii
ENSCSAVG00000003537	-	80	73.810	ENSPMAG00000005914	cwc22	63	67.766	Petromyzon_marinus
ENSCSAVG00000003537	-	78	76.098	ENSPCIG00000009903	-	75	68.392	Phascolarctos_cinereus
ENSCSAVG00000003537	-	78	74.634	ENSPFOG00000015025	cwc22	71	68.140	Poecilia_formosa
ENSCSAVG00000003537	-	77	74.877	ENSPLAG00000021405	cwc22	53	68.646	Poecilia_latipinna
ENSCSAVG00000003537	-	77	74.877	ENSPMEG00000007850	cwc22	53	68.646	Poecilia_mexicana
ENSCSAVG00000003537	-	72	71.579	ENSPREG00000004312	cwc22	62	66.479	Poecilia_reticulata
ENSCSAVG00000003537	-	83	72.273	ENSPPYG00000012986	CWC22	61	66.727	Pongo_abelii
ENSCSAVG00000003537	-	83	70.776	ENSPCAG00000011882	CWC22	60	66.913	Procavia_capensis
ENSCSAVG00000003537	-	89	71.084	ENSPCOG00000010195	CWC22	57	71.084	Propithecus_coquereli
ENSCSAVG00000003537	-	83	72.603	ENSPVAG00000011497	CWC22	59	67.778	Pteropus_vampyrus
ENSCSAVG00000003537	-	78	75.610	ENSPNYG00000010435	cwc22	77	65.556	Pundamilia_nyererei
ENSCSAVG00000003537	-	76	72.500	ENSRNOG00000038322	LOC500684	61	64.481	Rattus_norvegicus
ENSCSAVG00000003537	-	76	72.500	ENSRNOG00000012651	Cwc22	61	64.781	Rattus_norvegicus
ENSCSAVG00000003537	-	83	65.455	ENSRBIG00000036751	CWC22	61	63.636	Rhinopithecus_bieti
ENSCSAVG00000003537	-	83	72.273	ENSRROG00000037520	CWC22	62	66.727	Rhinopithecus_roxellana
ENSCSAVG00000003537	-	89	62.447	ENSSBOG00000021683	CWC22	58	64.695	Saimiri_boliviensis_boliviensis
ENSCSAVG00000003537	-	79	65.217	ENSSHAG00000004040	-	75	59.594	Sarcophilus_harrisii
ENSCSAVG00000003537	-	92	68.443	ENSSHAG00000016596	-	62	66.972	Sarcophilus_harrisii
ENSCSAVG00000003537	-	78	75.610	ENSSFOG00015010559	cwc22	60	64.930	Scleropages_formosus
ENSCSAVG00000003537	-	83	69.863	ENSSMAG00000004724	cwc22	56	64.610	Scophthalmus_maximus
ENSCSAVG00000003537	-	78	74.146	ENSSDUG00000010656	cwc22	54	68.460	Seriola_dumerili
ENSCSAVG00000003537	-	78	74.146	ENSSLDG00000023157	cwc22	77	68.646	Seriola_lalandi_dorsalis
ENSCSAVG00000003537	-	81	73.023	ENSSPUG00000006395	CWC22	63	63.110	Sphenodon_punctatus
ENSCSAVG00000003537	-	77	74.877	ENSSPAG00000008746	cwc22	57	65.331	Stegastes_partitus
ENSCSAVG00000003537	-	83	72.603	ENSSSCG00000016008	CWC22	60	68.022	Sus_scrofa
ENSCSAVG00000003537	-	83	71.233	ENSTGUG00000009340	-	62	66.174	Taeniopygia_guttata
ENSCSAVG00000003537	-	77	74.877	ENSTRUG00000014411	cwc22	57	67.347	Takifugu_rubripes
ENSCSAVG00000003537	-	78	73.039	ENSTNIG00000005074	cwc22	72	65.880	Tetraodon_nigroviridis
ENSCSAVG00000003537	-	83	65.909	ENSTBEG00000014539	CWC22	50	65.909	Tupaia_belangeri
ENSCSAVG00000003537	-	83	72.603	ENSTTRG00000012142	CWC22	61	66.306	Tursiops_truncatus
ENSCSAVG00000003537	-	83	72.603	ENSUAMG00000010342	CWC22	59	67.098	Ursus_americanus
ENSCSAVG00000003537	-	83	72.603	ENSUMAG00000016730	CWC22	59	67.098	Ursus_maritimus
ENSCSAVG00000003537	-	92	68.443	ENSVPAG00000008565	CWC22	60	66.117	Vicugna_pacos
ENSCSAVG00000003537	-	83	72.603	ENSVVUG00000009738	CWC22	59	67.837	Vulpes_vulpes
ENSCSAVG00000003537	-	79	74.396	ENSXETG00000014099	cwc22	70	66.117	Xenopus_tropicalis
ENSCSAVG00000003537	-	77	74.877	ENSXMAG00000013201	cwc22	54	68.831	Xiphophorus_maculatus