EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000003567 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 3453 bases
Position: chrreftig_15:65169-68621
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000005983	RRM_1	PF00076.22	1.4e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000006058	-	794	-	ENSCSAVP00000005983	165 (aa)	-	H2YKY1

Gene Model

Click here to download ENSCSAVG00000003567's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003567's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000003567	-	76	72.441	ENSCSAVG00000006093	-	65	70.866

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003567	-	70	61.667	ENSACIG00000002623	-	63	63.333	Amphilophus_citrinellus
ENSCSAVG00000003567	-	76	66.142	ENSACLG00000005676	-	61	60.000	Astatotilapia_calliptera
ENSCSAVG00000003567	-	89	50.314	ENSACLG00000021693	-	72	52.486	Astatotilapia_calliptera
ENSCSAVG00000003567	-	77	56.028	WBGene00004700	rsp-3	55	56.028	Caenorhabditis_elegans
ENSCSAVG00000003567	-	76	70.079	ENSCING00000007375	-	54	68.504	Ciona_intestinalis
ENSCSAVG00000003567	-	90	80.921	ENSCING00000000257	-	76	82.812	Ciona_intestinalis
ENSCSAVG00000003567	-	76	62.687	FBgn0283477	SF2	53	61.481	Drosophila_melanogaster
ENSCSAVG00000003567	-	95	56.970	ENSEBUG00000009582	-	55	64.286	Eptatretus_burgeri
ENSCSAVG00000003567	-	76	59.701	ENSFHEG00000017425	-	65	59.350	Fundulus_heteroclitus
ENSCSAVG00000003567	-	70	64.957	ENSGMOG00000010606	-	63	64.957	Gadus_morhua
ENSCSAVG00000003567	-	79	59.712	ENSGAFG00000000609	-	71	54.494	Gambusia_affinis
ENSCSAVG00000003567	-	96	51.497	ENSGAFG00000012721	-	62	59.603	Gambusia_affinis
ENSCSAVG00000003567	-	70	64.957	ENSGACG00000011094	-	63	64.957	Gasterosteus_aculeatus
ENSCSAVG00000003567	-	80	56.643	ENSHBUG00000015576	-	69	55.000	Haplochromis_burtoni
ENSCSAVG00000003567	-	78	58.779	ENSHCOG00000008016	-	51	59.690	Hippocampus_comes
ENSCSAVG00000003567	-	76	60.769	ENSMFAG00000034223	-	51	70.455	Macaca_fascicularis
ENSCSAVG00000003567	-	89	50.955	ENSMZEG00005019071	-	69	55.307	Maylandia_zebra
ENSCSAVG00000003567	-	76	66.142	ENSMZEG00005007947	-	61	60.000	Maylandia_zebra
ENSCSAVG00000003567	-	76	63.077	ENSMMOG00000018849	-	53	62.595	Mola_mola
ENSCSAVG00000003567	-	76	62.698	ENSNBRG00000008134	-	67	58.580	Neolamprologus_brichardi
ENSCSAVG00000003567	-	76	66.142	ENSNBRG00000019981	-	61	60.000	Neolamprologus_brichardi
ENSCSAVG00000003567	-	62	61.538	ENSOPRG00000004745	-	61	59.223	Ochotona_princeps
ENSCSAVG00000003567	-	76	57.554	ENSONIG00000004857	-	55	58.571	Oreochromis_niloticus
ENSCSAVG00000003567	-	70	61.345	ENSOANG00000007320	-	51	72.289	Ornithorhynchus_anatinus
ENSCSAVG00000003567	-	89	52.632	ENSORLG00000005314	-	51	62.595	Oryzias_latipes
ENSCSAVG00000003567	-	89	52.632	ENSORLG00015015497	-	51	62.595	Oryzias_latipes_hsok
ENSCSAVG00000003567	-	89	51.592	ENSOMEG00000017711	-	52	60.584	Oryzias_melastigma
ENSCSAVG00000003567	-	96	51.497	ENSPLAG00000019553	-	61	64.463	Poecilia_latipinna
ENSCSAVG00000003567	-	79	60.584	ENSPREG00000016792	-	71	55.114	Poecilia_reticulata
ENSCSAVG00000003567	-	89	50.314	ENSPNYG00000020651	-	69	54.696	Pundamilia_nyererei
ENSCSAVG00000003567	-	76	66.142	ENSPNYG00000017115	-	61	60.000	Pundamilia_nyererei
ENSCSAVG00000003567	-	77	57.534	ENSSDUG00000003887	-	56	58.219	Seriola_dumerili
ENSCSAVG00000003567	-	76	66.667	ENSTRUG00000017058	-	69	60.606	Takifugu_rubripes
ENSCSAVG00000003567	-	76	61.417	ENSTNIG00000009993	-	53	63.281	Tetraodon_nigroviridis
ENSCSAVG00000003567	-	79	63.077	ENSXCOG00000017888	-	74	54.802	Xiphophorus_couchianus
ENSCSAVG00000003567	-	96	51.497	ENSXCOG00000009643	-	63	58.278	Xiphophorus_couchianus
ENSCSAVG00000003567	-	79	60.145	ENSXMAG00000010797	-	71	54.802	Xiphophorus_maculatus