EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000003688 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 7854 bases
Position: chrreftig_73:47590-55443
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000006182	MMR_HSR1	PF01926.23	3.5e-08	1	1
ENSCSAVP00000006181	MMR_HSR1	PF01926.23	3.6e-08	1	1
ENSCSAVP00000006183	MMR_HSR1	PF01926.23	4.7e-08	1	1
ENSCSAVP00000006180	MMR_HSR1	PF01926.23	6.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000006261	-	1021	-	ENSCSAVP00000006183	295 (aa)	-	H2YLI1
ENSCSAVT00000006260	-	1199	-	ENSCSAVP00000006182	345 (aa)	-	H2YLI0
ENSCSAVT00000006259	-	1113	-	ENSCSAVP00000006181	354 (aa)	-	H2YLH9
ENSCSAVT00000006258	-	1713	-	ENSCSAVP00000006180	346 (aa)	-	H2YLH8

Gene Model

Click here to download ENSCSAVG00000003688's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003688's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000003688	-	95	45.263	ENSCSAVG00000003100	-	66	46.102
ENSCSAVG00000003688	-	95	40.123	ENSCSAVG00000001804	-	100	40.181
ENSCSAVG00000003688	-	92	49.051	ENSCSAVG00000007646	-	95	48.795

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003688	-	96	83.451	ENSAPOG00000001837	sept2	96	75.140	Acanthochromis_polyacanthus
ENSCSAVG00000003688	-	96	83.099	ENSAMEG00000016539	SEPT2	90	79.077	Ailuropoda_melanoleuca
ENSCSAVG00000003688	-	96	83.451	ENSACIG00000021718	sept2	87	83.502	Amphilophus_citrinellus
ENSCSAVG00000003688	-	96	83.451	ENSAOCG00000000954	sept2	96	77.168	Amphiprion_ocellaris
ENSCSAVG00000003688	-	96	83.451	ENSAPEG00000013904	sept2	96	75.140	Amphiprion_percula
ENSCSAVG00000003688	-	96	83.451	ENSATEG00000019489	sept2	90	79.385	Anabas_testudineus
ENSCSAVG00000003688	-	96	83.451	ENSACAG00000001408	SEPT2	96	75.852	Anolis_carolinensis
ENSCSAVG00000003688	-	96	83.099	ENSANAG00000023789	SEPT2	90	76.716	Aotus_nancymaae
ENSCSAVG00000003688	-	96	82.746	ENSACLG00000009428	sept2	85	83.108	Astatotilapia_calliptera
ENSCSAVG00000003688	-	96	83.451	ENSAMXG00000039525	sept2	91	79.385	Astyanax_mexicanus
ENSCSAVG00000003688	-	96	82.746	ENSBTAG00000002608	SEPT2	89	78.769	Bos_taurus
ENSCSAVG00000003688	-	96	83.099	ENSCJAG00000006122	-	98	73.151	Callithrix_jacchus
ENSCSAVG00000003688	-	96	82.746	ENSCAFG00000012960	SEPT2	92	78.462	Canis_familiaris
ENSCSAVG00000003688	-	96	82.746	ENSCAFG00020025094	-	98	74.930	Canis_lupus_dingo
ENSCSAVG00000003688	-	96	83.099	ENSCHIG00000026614	SEPT2	89	79.077	Capra_hircus
ENSCSAVG00000003688	-	96	82.746	ENSTSYG00000003579	-	89	78.769	Carlito_syrichta
ENSCSAVG00000003688	-	94	67.754	ENSCPOG00000034399	-	88	61.300	Cavia_porcellus
ENSCSAVG00000003688	-	96	82.746	ENSCPOG00000013687	-	89	78.769	Cavia_porcellus
ENSCSAVG00000003688	-	95	81.720	ENSCCAG00000031252	SEPT2	94	79.252	Cebus_capucinus
ENSCSAVG00000003688	-	96	82.746	ENSCATG00000033533	SEPT2	98	74.930	Cercocebus_atys
ENSCSAVG00000003688	-	96	54.577	ENSCLAG00000007700	-	91	53.704	Chinchilla_lanigera
ENSCSAVG00000003688	-	93	59.636	ENSCLAG00000003230	-	85	55.864	Chinchilla_lanigera
ENSCSAVG00000003688	-	96	82.746	ENSCLAG00000002255	-	89	78.769	Chinchilla_lanigera
ENSCSAVG00000003688	-	96	82.746	ENSCSAG00000005773	SEPT2	98	74.930	Chlorocebus_sabaeus
ENSCSAVG00000003688	-	96	79.932	ENSCHOG00000008715	SEPT2	90	76.716	Choloepus_hoffmanni
ENSCSAVG00000003688	-	96	83.451	ENSCPBG00000002410	SEPT2	89	79.385	Chrysemys_picta_bellii
ENSCSAVG00000003688	-	57	97.605	ENSCING00000008866	-	100	97.605	Ciona_intestinalis
ENSCSAVG00000003688	-	96	82.746	ENSCANG00000034470	SEPT2	100	71.914	Colobus_angolensis_palliatus
ENSCSAVG00000003688	-	96	82.746	ENSCGRG00001009996	-	89	78.769	Cricetulus_griseus_chok1gshd
ENSCSAVG00000003688	-	96	82.746	ENSCGRG00000014494	-	92	78.462	Cricetulus_griseus_crigri
ENSCSAVG00000003688	-	91	82.528	ENSCSEG00000017561	sept2	96	77.023	Cynoglossus_semilaevis
ENSCSAVG00000003688	-	85	80.952	ENSCVAG00000008351	sept2	89	76.370	Cyprinodon_variegatus
ENSCSAVG00000003688	-	96	83.451	ENSDARG00000027590	sept2	91	77.151	Danio_rerio
ENSCSAVG00000003688	-	96	83.099	ENSDNOG00000013772	SEPT2	89	79.077	Dasypus_novemcinctus
ENSCSAVG00000003688	-	96	82.746	ENSDORG00000000106	-	89	78.769	Dipodomys_ordii
ENSCSAVG00000003688	-	72	89.524	ENSETEG00000001868	-	66	89.524	Echinops_telfairi
ENSCSAVG00000003688	-	97	58.187	ENSEBUG00000009786	-	94	59.271	Eptatretus_burgeri
ENSCSAVG00000003688	-	94	82.609	ENSEBUG00000006082	sept2	71	75.915	Eptatretus_burgeri
ENSCSAVG00000003688	-	96	82.746	ENSEASG00005008254	SEPT2	89	78.769	Equus_asinus_asinus
ENSCSAVG00000003688	-	96	82.746	ENSECAG00000017553	SEPT2	89	78.769	Equus_caballus
ENSCSAVG00000003688	-	96	83.451	ENSELUG00000018507	sept2	96	74.095	Esox_lucius
ENSCSAVG00000003688	-	96	83.099	ENSFCAG00000002797	SEPT2	87	79.077	Felis_catus
ENSCSAVG00000003688	-	96	83.451	ENSFALG00000003429	SEPT2	97	76.136	Ficedula_albicollis
ENSCSAVG00000003688	-	96	82.746	ENSFDAG00000005819	SEPT2	89	78.769	Fukomys_damarensis
ENSCSAVG00000003688	-	96	83.451	ENSFHEG00000017419	sept2	94	78.086	Fundulus_heteroclitus
ENSCSAVG00000003688	-	96	83.451	ENSGMOG00000017631	sept2	89	74.929	Gadus_morhua
ENSCSAVG00000003688	-	96	83.099	ENSGALG00000005809	SEPT2	98	75.281	Gallus_gallus
ENSCSAVG00000003688	-	96	83.451	ENSGAFG00000018172	sept2	86	83.502	Gambusia_affinis
ENSCSAVG00000003688	-	96	82.746	ENSGACG00000015721	sept2	95	79.795	Gasterosteus_aculeatus
ENSCSAVG00000003688	-	96	83.451	ENSGAGG00000004594	SEPT2	89	79.385	Gopherus_agassizii
ENSCSAVG00000003688	-	96	82.746	ENSGGOG00000004597	SEPT2	98	74.930	Gorilla_gorilla
ENSCSAVG00000003688	-	96	82.746	ENSHBUG00000007012	sept2	90	76.558	Haplochromis_burtoni
ENSCSAVG00000003688	-	96	82.746	ENSHGLG00000005291	SEPT2	89	78.769	Heterocephalus_glaber_female
ENSCSAVG00000003688	-	96	73.239	ENSHGLG00000014923	-	88	69.538	Heterocephalus_glaber_female
ENSCSAVG00000003688	-	96	73.239	ENSHGLG00100001715	-	88	69.538	Heterocephalus_glaber_male
ENSCSAVG00000003688	-	96	82.746	ENSHGLG00100018899	SEPT2	89	78.769	Heterocephalus_glaber_male
ENSCSAVG00000003688	-	96	83.803	ENSIPUG00000017270	sept2	97	76.791	Ictalurus_punctatus
ENSCSAVG00000003688	-	96	82.746	ENSSTOG00000013357	SEPT2	90	78.769	Ictidomys_tridecemlineatus
ENSCSAVG00000003688	-	96	82.746	ENSJJAG00000019868	-	89	78.769	Jaculus_jaculus
ENSCSAVG00000003688	-	96	83.099	ENSKMAG00000002786	sept2	91	79.077	Kryptolebias_marmoratus
ENSCSAVG00000003688	-	96	82.746	ENSLBEG00000007372	sept2	86	82.686	Labrus_bergylta
ENSCSAVG00000003688	-	96	83.099	ENSLOCG00000006303	sept2	93	74.855	Lepisosteus_oculatus
ENSCSAVG00000003688	-	96	82.746	ENSLAFG00000011964	-	98	75.211	Loxodonta_africana
ENSCSAVG00000003688	-	96	81.690	ENSLAFG00000030960	-	89	77.778	Loxodonta_africana
ENSCSAVG00000003688	-	96	82.746	ENSMFAG00000039700	SEPT2	98	74.930	Macaca_fascicularis
ENSCSAVG00000003688	-	96	82.746	ENSMMUG00000004736	SEPT2	87	88.281	Macaca_mulatta
ENSCSAVG00000003688	-	96	82.746	ENSMNEG00000004313	SEPT2	98	74.930	Macaca_nemestrina
ENSCSAVG00000003688	-	96	82.746	ENSMLEG00000043469	SEPT2	98	74.930	Mandrillus_leucophaeus
ENSCSAVG00000003688	-	96	83.099	ENSMAMG00000004271	sept2	90	79.077	Mastacembelus_armatus
ENSCSAVG00000003688	-	96	82.746	ENSMZEG00005005022	sept2	96	76.149	Maylandia_zebra
ENSCSAVG00000003688	-	96	83.099	ENSMGAG00000003759	SEPT2	98	75.281	Meleagris_gallopavo
ENSCSAVG00000003688	-	96	81.690	ENSMAUG00000011950	-	93	81.068	Mesocricetus_auratus
ENSCSAVG00000003688	-	96	82.394	ENSMICG00000000909	SEPT2	89	78.462	Microcebus_murinus
ENSCSAVG00000003688	-	96	82.746	ENSMOCG00000014906	-	89	78.769	Microtus_ochrogaster
ENSCSAVG00000003688	-	96	83.099	ENSMMOG00000018068	sept2	85	83.165	Mola_mola
ENSCSAVG00000003688	-	96	83.099	ENSMODG00000016041	SEPT2	96	76.000	Monodelphis_domestica
ENSCSAVG00000003688	-	96	83.451	ENSMALG00000002736	sept2	90	79.692	Monopterus_albus
ENSCSAVG00000003688	-	96	82.746	MGP_CAROLIEiJ_G0014457	-	100	85.981	Mus_caroli
ENSCSAVG00000003688	-	96	82.746	ENSMUSG00000116048	Sept2	91	76.792	Mus_musculus
ENSCSAVG00000003688	-	96	82.746	ENSMUSG00000026276	Sept2	100	85.981	Mus_musculus
ENSCSAVG00000003688	-	96	82.746	MGP_PahariEiJ_G0027693	-	100	85.981	Mus_pahari
ENSCSAVG00000003688	-	96	82.746	MGP_SPRETEiJ_G0015261	-	100	85.981	Mus_spretus
ENSCSAVG00000003688	-	96	82.746	ENSMPUG00000000166	SEPT2	89	78.769	Mustela_putorius_furo
ENSCSAVG00000003688	-	96	83.099	ENSMLUG00000007108	SEPT2	99	75.493	Myotis_lucifugus
ENSCSAVG00000003688	-	96	83.099	ENSNGAG00000022412	-	90	78.769	Nannospalax_galili
ENSCSAVG00000003688	-	96	82.746	ENSNBRG00000003359	sept2	96	76.149	Neolamprologus_brichardi
ENSCSAVG00000003688	-	96	82.746	ENSNLEG00000013873	SEPT2	98	74.930	Nomascus_leucogenys
ENSCSAVG00000003688	-	84	75.806	ENSMEUG00000007833	-	93	75.862	Notamacropus_eugenii
ENSCSAVG00000003688	-	84	73.387	ENSMEUG00000016519	-	91	70.242	Notamacropus_eugenii
ENSCSAVG00000003688	-	96	80.479	ENSOPRG00000013796	SEPT2	90	77.177	Ochotona_princeps
ENSCSAVG00000003688	-	85	80.159	ENSODEG00000018677	-	99	72.671	Octodon_degus
ENSCSAVG00000003688	-	96	82.746	ENSODEG00000010316	-	97	74.679	Octodon_degus
ENSCSAVG00000003688	-	96	82.042	ENSODEG00000019855	-	89	78.154	Octodon_degus
ENSCSAVG00000003688	-	96	82.746	ENSONIG00000010605	sept2	96	76.149	Oreochromis_niloticus
ENSCSAVG00000003688	-	96	83.803	ENSOANG00000011758	-	98	76.056	Ornithorhynchus_anatinus
ENSCSAVG00000003688	-	96	82.746	ENSOCUG00000015500	SEPT2	89	79.077	Oryctolagus_cuniculus
ENSCSAVG00000003688	-	93	82.909	ENSORLG00000004835	sept2	95	79.114	Oryzias_latipes
ENSCSAVG00000003688	-	96	83.451	ENSORLG00020003263	sept2	92	77.151	Oryzias_latipes_hni
ENSCSAVG00000003688	-	96	83.451	ENSORLG00015006412	sept2	92	77.151	Oryzias_latipes_hsok
ENSCSAVG00000003688	-	96	83.451	ENSOMEG00000008923	sept2	92	79.692	Oryzias_melastigma
ENSCSAVG00000003688	-	96	83.451	ENSOGAG00000004457	SEPT2	98	75.775	Otolemur_garnettii
ENSCSAVG00000003688	-	96	74.296	ENSOARG00000017810	-	89	71.385	Ovis_aries
ENSCSAVG00000003688	-	96	82.746	ENSPPAG00000034127	SEPT2	98	74.930	Pan_paniscus
ENSCSAVG00000003688	-	96	83.099	ENSPPRG00000012154	SEPT2	89	79.077	Panthera_pardus
ENSCSAVG00000003688	-	96	83.099	ENSPTIG00000004202	SEPT2	91	77.133	Panthera_tigris_altaica
ENSCSAVG00000003688	-	96	82.746	ENSPTRG00000023481	SEPT2	98	73.315	Pan_troglodytes
ENSCSAVG00000003688	-	96	82.746	ENSPANG00000007917	SEPT2	98	74.930	Papio_anubis
ENSCSAVG00000003688	-	96	83.451	ENSPKIG00000002533	sept2	95	76.797	Paramormyrops_kingsleyae
ENSCSAVG00000003688	-	96	83.451	ENSPSIG00000009642	SEPT2	89	79.385	Pelodiscus_sinensis
ENSCSAVG00000003688	-	96	83.451	ENSPMGG00000012338	sept2	85	79.385	Periophthalmus_magnuspinnatus
ENSCSAVG00000003688	-	96	82.746	ENSPEMG00000022937	-	89	78.769	Peromyscus_maniculatus_bairdii
ENSCSAVG00000003688	-	96	83.099	ENSPCIG00000005866	SEPT2	97	78.462	Phascolarctos_cinereus
ENSCSAVG00000003688	-	96	83.451	ENSPFOG00000017007	sept2	91	79.692	Poecilia_formosa
ENSCSAVG00000003688	-	96	83.451	ENSPLAG00000003540	sept2	91	77.151	Poecilia_latipinna
ENSCSAVG00000003688	-	96	83.451	ENSPMEG00000003785	sept2	91	77.151	Poecilia_mexicana
ENSCSAVG00000003688	-	96	83.451	ENSPREG00000007538	sept2	87	82.807	Poecilia_reticulata
ENSCSAVG00000003688	-	96	82.746	ENSPPYG00000013353	SEPT2	89	78.769	Pongo_abelii
ENSCSAVG00000003688	-	84	81.048	ENSPCAG00000003337	SEPT2	97	74.675	Procavia_capensis
ENSCSAVG00000003688	-	96	79.863	ENSPVAG00000000558	SEPT2	90	76.347	Pteropus_vampyrus
ENSCSAVG00000003688	-	96	82.394	ENSPNYG00000000783	sept2	96	75.862	Pundamilia_nyererei
ENSCSAVG00000003688	-	96	83.451	ENSPNAG00000010720	sept2	90	79.385	Pygocentrus_nattereri
ENSCSAVG00000003688	-	96	82.394	ENSRNOG00000017952	Sept2	89	78.462	Rattus_norvegicus
ENSCSAVG00000003688	-	96	82.746	ENSRBIG00000032420	SEPT2	89	74.930	Rhinopithecus_bieti
ENSCSAVG00000003688	-	96	82.746	ENSRROG00000031700	SEPT2	98	74.930	Rhinopithecus_roxellana
ENSCSAVG00000003688	-	96	83.099	ENSSBOG00000016731	SEPT2	89	79.077	Saimiri_boliviensis_boliviensis
ENSCSAVG00000003688	-	96	83.099	ENSSHAG00000012877	SEPT2	97	75.852	Sarcophilus_harrisii
ENSCSAVG00000003688	-	96	83.451	ENSSFOG00015018742	sept2	97	74.586	Scleropages_formosus
ENSCSAVG00000003688	-	96	83.451	ENSSMAG00000007297	sept2	94	78.086	Scophthalmus_maximus
ENSCSAVG00000003688	-	96	83.451	ENSSDUG00000011223	sept2	90	79.385	Seriola_dumerili
ENSCSAVG00000003688	-	96	83.451	ENSSLDG00000016125	sept2	90	79.385	Seriola_lalandi_dorsalis
ENSCSAVG00000003688	-	72	89.524	ENSSARG00000012133	-	66	89.524	Sorex_araneus
ENSCSAVG00000003688	-	96	83.451	ENSSPAG00000001557	sept2	96	77.168	Stegastes_partitus
ENSCSAVG00000003688	-	96	83.451	ENSSSCG00000016370	SEPT2	98	75.775	Sus_scrofa
ENSCSAVG00000003688	-	96	83.451	ENSTGUG00000006160	SEPT2	94	77.616	Taeniopygia_guttata
ENSCSAVG00000003688	-	96	83.099	ENSTRUG00000021827	sept2	97	76.286	Takifugu_rubripes
ENSCSAVG00000003688	-	96	83.099	ENSTNIG00000007849	sept2	91	79.077	Tetraodon_nigroviridis
ENSCSAVG00000003688	-	96	83.099	ENSUAMG00000017781	SEPT2	90	78.769	Ursus_americanus
ENSCSAVG00000003688	-	96	83.099	ENSUMAG00000010525	SEPT2	89	79.077	Ursus_maritimus
ENSCSAVG00000003688	-	96	82.746	ENSVVUG00000022793	-	98	75.211	Vulpes_vulpes
ENSCSAVG00000003688	-	96	83.803	ENSXETG00000012166	sept2	97	77.326	Xenopus_tropicalis
ENSCSAVG00000003688	-	96	74.296	ENSXCOG00000007338	sept2	93	70.062	Xiphophorus_couchianus
ENSCSAVG00000003688	-	96	83.451	ENSXMAG00000004256	sept2	91	79.692	Xiphophorus_maculatus