EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000003706 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 11025 bases
Position: chrreftig_151:338088-349112
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000006216	tRNA_bind	PF01588.20	2.9e-22	1	1
ENSCSAVP00000006213	tRNA_bind	PF01588.20	3.2e-22	1	1
ENSCSAVP00000006217	tRNA_bind	PF01588.20	3.7e-22	1	1
ENSCSAVP00000006214	tRNA_bind	PF01588.20	5.7e-22	1	1
ENSCSAVP00000006215	tRNA_bind	PF01588.20	3e-16	1	1
ENSCSAVP00000006215	tRNA-synt_1b	PF00579.25	2.2e-64	1	1
ENSCSAVP00000006214	tRNA-synt_1b	PF00579.25	2.7e-64	1	1
ENSCSAVP00000006216	tRNA-synt_1b	PF00579.25	2.8e-64	1	1
ENSCSAVP00000006213	tRNA-synt_1b	PF00579.25	2.8e-64	1	1
ENSCSAVP00000006217	tRNA-synt_1b	PF00579.25	2.8e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000006293	-	1490	-	ENSCSAVP00000006215	481 (aa)	-	H2YLL3
ENSCSAVT00000006292	-	1594	-	ENSCSAVP00000006214	515 (aa)	-	H2YLL2
ENSCSAVT00000006291	-	1676	-	ENSCSAVP00000006213	528 (aa)	-	H2YLL1
ENSCSAVT00000006295	-	1730	-	ENSCSAVP00000006217	529 (aa)	-	H2YLL5
ENSCSAVT00000006294	-	1729	-	ENSCSAVP00000006216	524 (aa)	-	H2YLL4

Gene Model

Click here to download ENSCSAVG00000003706's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003706's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003706	-	99	67.429	ENSG00000134684	YARS	93	74.656	Homo_sapiens
ENSCSAVG00000003706	-	99	66.290	ENSAPOG00000020788	yars	99	66.102	Acanthochromis_polyacanthus
ENSCSAVG00000003706	-	99	68.371	ENSAMEG00000007476	YARS	99	68.251	Ailuropoda_melanoleuca
ENSCSAVG00000003706	-	99	67.437	ENSACIG00000017504	yars	99	67.437	Amphilophus_citrinellus
ENSCSAVG00000003706	-	99	66.353	ENSAOCG00000009987	yars	99	66.353	Amphiprion_ocellaris
ENSCSAVG00000003706	-	99	66.541	ENSAPEG00000001273	yars	99	66.541	Amphiprion_percula
ENSCSAVG00000003706	-	99	66.667	ENSATEG00000005301	yars	99	66.348	Anabas_testudineus
ENSCSAVG00000003706	-	98	62.235	ENSAPLG00000005739	YARS	98	61.850	Anas_platyrhynchos
ENSCSAVG00000003706	-	99	65.720	ENSACAG00000003568	YARS	99	65.589	Anolis_carolinensis
ENSCSAVG00000003706	-	99	67.810	ENSANAG00000034533	YARS	99	67.681	Aotus_nancymaae
ENSCSAVG00000003706	-	99	65.900	ENSACLG00000004618	yars	99	65.900	Astatotilapia_calliptera
ENSCSAVG00000003706	-	99	66.163	ENSAMXG00000010993	yars	99	65.720	Astyanax_mexicanus
ENSCSAVG00000003706	-	99	67.932	ENSBTAG00000018065	YARS	99	67.932	Bos_taurus
ENSCSAVG00000003706	-	99	67.300	ENSCJAG00000001037	YARS	99	67.300	Callithrix_jacchus
ENSCSAVG00000003706	-	99	68.441	ENSCAFG00000010481	YARS	93	68.441	Canis_familiaris
ENSCSAVG00000003706	-	99	68.798	ENSCAFG00020025379	YARS	99	68.311	Canis_lupus_dingo
ENSCSAVG00000003706	-	99	67.552	ENSCHIG00000014340	YARS	99	67.552	Capra_hircus
ENSCSAVG00000003706	-	99	68.000	ENSTSYG00000005019	YARS	99	67.810	Carlito_syrichta
ENSCSAVG00000003706	-	89	50.917	ENSCAPG00000008627	YARS	100	50.917	Cavia_aperea
ENSCSAVG00000003706	-	99	67.238	ENSCPOG00000009614	YARS	93	66.857	Cavia_porcellus
ENSCSAVG00000003706	-	99	67.429	ENSCCAG00000036757	YARS	97	67.300	Cebus_capucinus
ENSCSAVG00000003706	-	99	67.619	ENSCATG00000044394	YARS	99	67.490	Cercocebus_atys
ENSCSAVG00000003706	-	99	67.424	ENSCLAG00000008977	YARS	93	67.110	Chinchilla_lanigera
ENSCSAVG00000003706	-	99	67.557	ENSCSAG00000001062	YARS	99	67.429	Chlorocebus_sabaeus
ENSCSAVG00000003706	-	97	58.904	ENSCHOG00000003939	YARS	100	59.136	Choloepus_hoffmanni
ENSCSAVG00000003706	-	99	69.011	ENSCPBG00000010998	YARS	99	69.011	Chrysemys_picta_bellii
ENSCSAVG00000003706	-	99	79.206	ENSCING00000005113	-	99	79.206	Ciona_intestinalis
ENSCSAVG00000003706	-	99	67.619	ENSCANG00000038285	YARS	99	67.490	Colobus_angolensis_palliatus
ENSCSAVG00000003706	-	99	68.000	ENSCGRG00001010863	Yars	99	63.550	Cricetulus_griseus_chok1gshd
ENSCSAVG00000003706	-	99	68.000	ENSCGRG00000007526	Yars	93	67.681	Cricetulus_griseus_crigri
ENSCSAVG00000003706	-	99	65.465	ENSCSEG00000009643	yars	99	65.465	Cynoglossus_semilaevis
ENSCSAVG00000003706	-	99	66.414	ENSCVAG00000016583	yars	99	66.414	Cyprinodon_variegatus
ENSCSAVG00000003706	-	99	67.742	ENSDARG00000035913	yars	98	85.714	Danio_rerio
ENSCSAVG00000003706	-	99	67.871	ENSDNOG00000000536	YARS	99	67.362	Dasypus_novemcinctus
ENSCSAVG00000003706	-	99	67.810	ENSDORG00000011871	Yars	99	67.490	Dipodomys_ordii
ENSCSAVG00000003706	-	99	61.742	FBgn0027080	TyrRS	99	61.742	Drosophila_melanogaster
ENSCSAVG00000003706	-	85	85.950	ENSETEG00000000215	YARS	85	85.950	Echinops_telfairi
ENSCSAVG00000003706	-	99	58.979	ENSEBUG00000004750	yars	100	58.868	Eptatretus_burgeri
ENSCSAVG00000003706	-	99	67.992	ENSEASG00005011762	YARS	92	67.681	Equus_asinus_asinus
ENSCSAVG00000003706	-	99	68.000	ENSECAG00000010015	YARS	68	67.871	Equus_caballus
ENSCSAVG00000003706	-	70	65.657	ENSEEUG00000005992	-	65	65.657	Erinaceus_europaeus
ENSCSAVG00000003706	-	99	66.730	ENSELUG00000017171	yars	99	66.477	Esox_lucius
ENSCSAVG00000003706	-	86	86.996	ENSFCAG00000000704	YARS	99	86.996	Felis_catus
ENSCSAVG00000003706	-	99	66.919	ENSFALG00000000592	YARS	93	66.412	Ficedula_albicollis
ENSCSAVG00000003706	-	99	66.793	ENSFDAG00000006620	YARS	93	66.477	Fukomys_damarensis
ENSCSAVG00000003706	-	99	66.038	ENSFHEG00000022444	yars	99	65.725	Fundulus_heteroclitus
ENSCSAVG00000003706	-	97	66.467	ENSGMOG00000006555	yars	100	66.946	Gadus_morhua
ENSCSAVG00000003706	-	99	67.304	ENSGALG00000003563	YARS	97	66.603	Gallus_gallus
ENSCSAVG00000003706	-	99	65.974	ENSGACG00000008516	yars	99	65.974	Gasterosteus_aculeatus
ENSCSAVG00000003706	-	99	69.011	ENSGAGG00000024290	YARS	99	69.011	Gopherus_agassizii
ENSCSAVG00000003706	-	99	67.238	ENSGGOG00000014013	YARS	99	67.110	Gorilla_gorilla
ENSCSAVG00000003706	-	99	64.540	ENSHBUG00000018909	yars	99	64.540	Haplochromis_burtoni
ENSCSAVG00000003706	-	99	66.415	ENSHGLG00000013843	YARS	93	66.288	Heterocephalus_glaber_female
ENSCSAVG00000003706	-	69	62.125	ENSHGLG00100020546	-	99	61.580	Heterocephalus_glaber_male
ENSCSAVG00000003706	-	99	65.660	ENSHGLG00100002785	-	99	65.530	Heterocephalus_glaber_male
ENSCSAVG00000003706	-	97	74.260	ENSHCOG00000006672	yars	99	64.432	Hippocampus_comes
ENSCSAVG00000003706	-	99	66.603	ENSIPUG00000021749	yars	99	66.353	Ictalurus_punctatus
ENSCSAVG00000003706	-	99	68.571	ENSSTOG00000012031	YARS	93	68.762	Ictidomys_tridecemlineatus
ENSCSAVG00000003706	-	99	66.730	ENSJJAG00000013281	Yars	93	66.414	Jaculus_jaculus
ENSCSAVG00000003706	-	99	65.217	ENSKMAG00000021752	yars	99	65.217	Kryptolebias_marmoratus
ENSCSAVG00000003706	-	99	65.854	ENSLBEG00000024080	yars	99	65.478	Labrus_bergylta
ENSCSAVG00000003706	-	99	65.465	ENSLACG00000015577	YARS	99	65.465	Latimeria_chalumnae
ENSCSAVG00000003706	-	99	65.905	ENSLOCG00000002165	yars	99	65.779	Lepisosteus_oculatus
ENSCSAVG00000003706	-	99	67.619	ENSLAFG00000003786	YARS	95	67.429	Loxodonta_africana
ENSCSAVG00000003706	-	99	64.176	ENSMFAG00000040933	YARS	99	64.054	Macaca_fascicularis
ENSCSAVG00000003706	-	99	67.619	ENSMMUG00000019746	YARS	99	67.490	Macaca_mulatta
ENSCSAVG00000003706	-	99	64.015	ENSMNEG00000031865	YARS	99	63.636	Macaca_nemestrina
ENSCSAVG00000003706	-	99	67.619	ENSMLEG00000041315	YARS	99	67.490	Mandrillus_leucophaeus
ENSCSAVG00000003706	-	99	66.226	ENSMAMG00000006092	yars	99	65.974	Mastacembelus_armatus
ENSCSAVG00000003706	-	99	64.407	ENSMZEG00005011426	yars	99	64.218	Maylandia_zebra
ENSCSAVG00000003706	-	99	66.095	ENSMGAG00000005063	YARS	99	65.333	Meleagris_gallopavo
ENSCSAVG00000003706	-	97	67.375	ENSMAUG00000021126	Yars	99	67.379	Mesocricetus_auratus
ENSCSAVG00000003706	-	99	68.251	ENSMICG00000011204	YARS	99	68.251	Microcebus_murinus
ENSCSAVG00000003706	-	99	67.424	ENSMOCG00000011342	Yars	93	67.110	Microtus_ochrogaster
ENSCSAVG00000003706	-	99	65.253	ENSMMOG00000021133	yars	99	65.657	Mola_mola
ENSCSAVG00000003706	-	99	66.603	ENSMODG00000017404	YARS	99	66.793	Monodelphis_domestica
ENSCSAVG00000003706	-	69	71.810	ENSMALG00000003648	yars	93	71.810	Monopterus_albus
ENSCSAVG00000003706	-	99	67.803	MGP_CAROLIEiJ_G0026513	Yars	93	67.803	Mus_caroli
ENSCSAVG00000003706	-	99	68.000	ENSMUSG00000028811	Yars	93	67.871	Mus_musculus
ENSCSAVG00000003706	-	99	67.614	MGP_PahariEiJ_G0028844	Yars	93	67.490	Mus_pahari
ENSCSAVG00000003706	-	99	67.619	MGP_SPRETEiJ_G0027493	Yars	93	67.490	Mus_spretus
ENSCSAVG00000003706	-	99	68.251	ENSMLUG00000000759	YARS	99	67.932	Myotis_lucifugus
ENSCSAVG00000003706	-	98	66.858	ENSNGAG00000001419	Yars	100	67.383	Nannospalax_galili
ENSCSAVG00000003706	-	99	66.092	ENSNBRG00000020413	yars	99	66.092	Neolamprologus_brichardi
ENSCSAVG00000003706	-	99	67.429	ENSNLEG00000002922	YARS	99	67.110	Nomascus_leucogenys
ENSCSAVG00000003706	-	75	80.606	ENSMEUG00000011824	-	74	80.606	Notamacropus_eugenii
ENSCSAVG00000003706	-	99	64.449	ENSOPRG00000003669	YARS	99	64.449	Ochotona_princeps
ENSCSAVG00000003706	-	99	67.235	ENSODEG00000005363	YARS	93	66.920	Octodon_degus
ENSCSAVG00000003706	-	99	65.291	ENSONIG00000015400	yars	99	64.916	Oreochromis_niloticus
ENSCSAVG00000003706	-	93	66.531	ENSOANG00000011779	YARS	99	66.465	Ornithorhynchus_anatinus
ENSCSAVG00000003706	-	99	68.061	ENSOCUG00000010007	YARS	99	68.061	Oryctolagus_cuniculus
ENSCSAVG00000003706	-	98	66.221	ENSORLG00000013982	yars	96	66.221	Oryzias_latipes
ENSCSAVG00000003706	-	99	66.541	ENSORLG00020020750	yars	99	66.541	Oryzias_latipes_hni
ENSCSAVG00000003706	-	99	66.667	ENSORLG00015008963	yars	99	66.667	Oryzias_latipes_hsok
ENSCSAVG00000003706	-	99	66.163	ENSOMEG00000013016	yars	93	82.174	Oryzias_melastigma
ENSCSAVG00000003706	-	99	68.381	ENSOGAG00000007359	YARS	99	68.190	Otolemur_garnettii
ENSCSAVG00000003706	-	99	67.932	ENSOARG00000020897	YARS	93	67.932	Ovis_aries
ENSCSAVG00000003706	-	99	67.619	ENSPPAG00000035791	YARS	100	65.595	Pan_paniscus
ENSCSAVG00000003706	-	99	67.681	ENSPPRG00000023768	YARS	99	67.681	Panthera_pardus
ENSCSAVG00000003706	-	99	67.681	ENSPTIG00000003438	YARS	99	67.681	Panthera_tigris_altaica
ENSCSAVG00000003706	-	99	67.619	ENSPTRG00000000491	YARS	99	67.490	Pan_troglodytes
ENSCSAVG00000003706	-	99	67.619	ENSPANG00000009804	YARS	99	67.490	Papio_anubis
ENSCSAVG00000003706	-	99	66.667	ENSPKIG00000024596	yars	99	66.476	Paramormyrops_kingsleyae
ENSCSAVG00000003706	-	99	63.360	ENSPSIG00000006945	YARS	89	78.107	Pelodiscus_sinensis
ENSCSAVG00000003706	-	99	66.538	ENSPMGG00000022917	yars	99	66.538	Periophthalmus_magnuspinnatus
ENSCSAVG00000003706	-	99	66.857	ENSPEMG00000010746	Yars	93	66.540	Peromyscus_maniculatus_bairdii
ENSCSAVG00000003706	-	99	66.794	ENSPCIG00000022457	YARS	99	66.412	Phascolarctos_cinereus
ENSCSAVG00000003706	-	99	65.283	ENSPFOG00000014808	yars	99	65.283	Poecilia_formosa
ENSCSAVG00000003706	-	99	65.472	ENSPLAG00000020075	yars	99	65.283	Poecilia_latipinna
ENSCSAVG00000003706	-	99	65.283	ENSPMEG00000002803	yars	99	65.094	Poecilia_mexicana
ENSCSAVG00000003706	-	99	65.649	ENSPREG00000018280	yars	99	65.458	Poecilia_reticulata
ENSCSAVG00000003706	-	99	65.341	ENSPPYG00000001585	YARS	99	65.217	Pongo_abelii
ENSCSAVG00000003706	-	76	62.624	ENSPCAG00000011170	YARS	76	62.624	Procavia_capensis
ENSCSAVG00000003706	-	99	67.681	ENSPCOG00000021026	YARS	99	67.681	Propithecus_coquereli
ENSCSAVG00000003706	-	99	67.810	ENSPVAG00000010984	YARS	99	67.490	Pteropus_vampyrus
ENSCSAVG00000003706	-	99	65.709	ENSPNYG00000000860	yars	99	65.709	Pundamilia_nyererei
ENSCSAVG00000003706	-	99	66.983	ENSPNAG00000009622	yars	99	66.793	Pygocentrus_nattereri
ENSCSAVG00000003706	-	99	67.803	ENSRNOG00000007213	Yars	93	67.614	Rattus_norvegicus
ENSCSAVG00000003706	-	58	60.490	ENSRBIG00000044271	-	85	60.490	Rhinopithecus_bieti
ENSCSAVG00000003706	-	99	67.619	ENSRROG00000039913	YARS	99	67.300	Rhinopithecus_roxellana
ENSCSAVG00000003706	-	99	67.429	ENSSBOG00000030205	YARS	100	66.602	Saimiri_boliviensis_boliviensis
ENSCSAVG00000003706	-	99	67.619	ENSSHAG00000011851	YARS	99	67.490	Sarcophilus_harrisii
ENSCSAVG00000003706	-	99	66.541	ENSSFOG00015007179	yars	99	66.163	Scleropages_formosus
ENSCSAVG00000003706	-	99	64.286	ENSSMAG00000020736	yars	99	64.286	Scophthalmus_maximus
ENSCSAVG00000003706	-	99	67.235	ENSSDUG00000001782	yars	99	66.792	Seriola_dumerili
ENSCSAVG00000003706	-	99	67.490	ENSSLDG00000008268	yars	99	67.297	Seriola_lalandi_dorsalis
ENSCSAVG00000003706	-	81	68.679	ENSSARG00000012227	-	82	68.679	Sorex_araneus
ENSCSAVG00000003706	-	99	68.061	ENSSPUG00000000333	YARS	99	67.742	Sphenodon_punctatus
ENSCSAVG00000003706	-	99	65.789	ENSSPAG00000020632	yars	99	62.667	Stegastes_partitus
ENSCSAVG00000003706	-	99	68.061	ENSSSCG00000030369	YARS	99	67.932	Sus_scrofa
ENSCSAVG00000003706	-	99	66.922	ENSTGUG00000001342	YARS	99	66.539	Taeniopygia_guttata
ENSCSAVG00000003706	-	99	66.857	ENSTRUG00000014099	yars	99	66.667	Takifugu_rubripes
ENSCSAVG00000003706	-	99	66.795	ENSTNIG00000009237	yars	99	66.795	Tetraodon_nigroviridis
ENSCSAVG00000003706	-	97	63.601	ENSTBEG00000014374	YARS	100	63.477	Tupaia_belangeri
ENSCSAVG00000003706	-	99	66.920	ENSTTRG00000014987	YARS	99	66.793	Tursiops_truncatus
ENSCSAVG00000003706	-	99	66.529	ENSUAMG00000000392	YARS	93	80.872	Ursus_americanus
ENSCSAVG00000003706	-	99	64.162	ENSUMAG00000008312	YARS	92	63.969	Ursus_maritimus
ENSCSAVG00000003706	-	99	60.152	ENSVPAG00000010958	YARS	99	60.152	Vicugna_pacos
ENSCSAVG00000003706	-	99	68.441	ENSVVUG00000015468	YARS	99	67.899	Vulpes_vulpes
ENSCSAVG00000003706	-	99	65.779	ENSXETG00000027865	yars	99	65.537	Xenopus_tropicalis
ENSCSAVG00000003706	-	95	66.996	ENSXMAG00000016348	yars	82	66.798	Xiphophorus_maculatus