EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000003833 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 19503 bases
Position: chrreftig_30:1616703-1636205
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000006404	RNase_T	PF00929.24	2.1e-22	1	1
ENSCSAVP00000006403	RNase_T	PF00929.24	9.6e-20	1	1
ENSCSAVP00000006402	RNase_T	PF00929.24	1.5e-19	1	1
ENSCSAVP00000006400	RNase_T	PF00929.24	1.5e-19	1	1
ENSCSAVP00000006401	RNase_T	PF00929.24	1.6e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000006484	-	1545	-	ENSCSAVP00000006404	464 (aa)	-	H2YM52
ENSCSAVT00000006482	-	3458	-	ENSCSAVP00000006402	1131 (aa)	-	H2YM50
ENSCSAVT00000006483	-	2806	-	ENSCSAVP00000006403	922 (aa)	-	H2YM51
ENSCSAVT00000006480	-	3407	-	ENSCSAVP00000006400	1119 (aa)	-	H2YM48
ENSCSAVT00000006481	-	3438	-	ENSCSAVP00000006401	1131 (aa)	-	H2YM49

Gene Model

Click here to download ENSCSAVG00000003833's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003833's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003833	-	98	60.058	ENSAPOG00000022955	pan2	91	46.921	Acanthochromis_polyacanthus
ENSCSAVG00000003833	-	97	62.099	ENSAMEG00000003824	PAN2	91	46.376	Ailuropoda_melanoleuca
ENSCSAVG00000003833	-	82	49.869	ENSACIG00000013046	-	86	50.131	Amphilophus_citrinellus
ENSCSAVG00000003833	-	99	44.612	ENSACIG00000012858	PAN2	92	39.279	Amphilophus_citrinellus
ENSCSAVG00000003833	-	99	51.515	ENSACIG00000013079	pan2	91	47.271	Amphilophus_citrinellus
ENSCSAVG00000003833	-	98	60.058	ENSAOCG00000022334	pan2	91	46.916	Amphiprion_ocellaris
ENSCSAVG00000003833	-	98	60.058	ENSAPEG00000022760	pan2	90	46.742	Amphiprion_percula
ENSCSAVG00000003833	-	99	51.923	ENSATEG00000024030	pan2	91	47.089	Anabas_testudineus
ENSCSAVG00000003833	-	93	54.335	ENSAPLG00000005195	PAN2	92	45.598	Anas_platyrhynchos
ENSCSAVG00000003833	-	97	62.099	ENSACAG00000007067	PAN2	91	46.708	Anolis_carolinensis
ENSCSAVG00000003833	-	97	62.099	ENSANAG00000036468	PAN2	80	61.408	Aotus_nancymaae
ENSCSAVG00000003833	-	99	46.436	ENSACLG00000023821	pan2	91	40.035	Astatotilapia_calliptera
ENSCSAVG00000003833	-	97	61.224	ENSACLG00000023674	pan2	91	46.864	Astatotilapia_calliptera
ENSCSAVG00000003833	-	97	60.933	ENSAMXG00000005418	pan2	90	45.812	Astyanax_mexicanus
ENSCSAVG00000003833	-	97	62.099	ENSBTAG00000004376	PAN2	91	46.410	Bos_taurus
ENSCSAVG00000003833	-	70	37.269	WBGene00017951	panl-2	63	36.594	Caenorhabditis_elegans
ENSCSAVG00000003833	-	97	62.099	ENSCJAG00000011141	PAN2	75	62.099	Callithrix_jacchus
ENSCSAVG00000003833	-	97	62.099	ENSCAFG00000000119	PAN2	95	49.578	Canis_familiaris
ENSCSAVG00000003833	-	97	62.099	ENSCAFG00020024865	PAN2	91	45.635	Canis_lupus_dingo
ENSCSAVG00000003833	-	97	62.099	ENSCHIG00000026935	PAN2	91	46.041	Capra_hircus
ENSCSAVG00000003833	-	97	62.099	ENSTSYG00000006927	PAN2	86	58.290	Carlito_syrichta
ENSCSAVG00000003833	-	72	57.440	ENSCAPG00000008058	-	85	56.380	Cavia_aperea
ENSCSAVG00000003833	-	97	62.391	ENSCPOG00000014918	PAN2	91	45.692	Cavia_porcellus
ENSCSAVG00000003833	-	97	62.099	ENSCCAG00000036637	PAN2	80	61.408	Cebus_capucinus
ENSCSAVG00000003833	-	97	62.099	ENSCATG00000045076	PAN2	80	61.756	Cercocebus_atys
ENSCSAVG00000003833	-	97	62.391	ENSCLAG00000011700	PAN2	91	45.597	Chinchilla_lanigera
ENSCSAVG00000003833	-	97	62.099	ENSCSAG00000005173	PAN2	91	46.114	Chlorocebus_sabaeus
ENSCSAVG00000003833	-	99	55.970	ENSCPBG00000014029	PAN2	91	46.924	Chrysemys_picta_bellii
ENSCSAVG00000003833	-	51	89.496	ENSCING00000000413	-	99	89.496	Ciona_intestinalis
ENSCSAVG00000003833	-	97	61.976	ENSCANG00000017798	PAN2	74	61.976	Colobus_angolensis_palliatus
ENSCSAVG00000003833	-	97	62.099	ENSCGRG00001019707	Pan2	91	46.107	Cricetulus_griseus_chok1gshd
ENSCSAVG00000003833	-	97	62.099	ENSCGRG00000009996	Pan2	91	45.682	Cricetulus_griseus_crigri
ENSCSAVG00000003833	-	98	57.186	ENSCSEG00000021529	pan2	91	45.510	Cynoglossus_semilaevis
ENSCSAVG00000003833	-	99	52.654	ENSCVAG00000010197	pan2	91	47.217	Cyprinodon_variegatus
ENSCSAVG00000003833	-	97	61.808	ENSDARG00000074675	pan2	91	46.921	Danio_rerio
ENSCSAVG00000003833	-	99	52.034	ENSDNOG00000010940	PAN2	91	45.789	Dasypus_novemcinctus
ENSCSAVG00000003833	-	56	63.218	ENSDORG00000023999	-	73	63.218	Dipodomys_ordii
ENSCSAVG00000003833	-	97	50.975	FBgn0033352	PAN2	94	39.916	Drosophila_melanogaster
ENSCSAVG00000003833	-	81	61.224	ENSETEG00000012041	PAN2	69	61.628	Echinops_telfairi
ENSCSAVG00000003833	-	98	43.333	ENSEBUG00000002773	pan2	90	45.979	Eptatretus_burgeri
ENSCSAVG00000003833	-	97	62.099	ENSEASG00005005235	PAN2	91	45.960	Equus_asinus_asinus
ENSCSAVG00000003833	-	99	53.092	ENSECAG00000019814	PAN2	91	46.154	Equus_caballus
ENSCSAVG00000003833	-	97	60.933	ENSELUG00000024604	pan2	91	46.376	Esox_lucius
ENSCSAVG00000003833	-	97	62.099	ENSFCAG00000012021	PAN2	91	46.201	Felis_catus
ENSCSAVG00000003833	-	99	55.446	ENSFALG00000000464	PAN2	90	47.012	Ficedula_albicollis
ENSCSAVG00000003833	-	97	62.099	ENSFDAG00000017104	PAN2	91	45.605	Fukomys_damarensis
ENSCSAVG00000003833	-	99	51.702	ENSFHEG00000000157	pan2	87	46.396	Fundulus_heteroclitus
ENSCSAVG00000003833	-	97	60.000	ENSGMOG00000007249	pan2	90	46.080	Gadus_morhua
ENSCSAVG00000003833	-	99	55.446	ENSGALG00000031512	PAN2	91	46.837	Gallus_gallus
ENSCSAVG00000003833	-	99	52.220	ENSGAFG00000000284	pan2	91	46.837	Gambusia_affinis
ENSCSAVG00000003833	-	97	60.580	ENSGACG00000010722	pan2	90	47.038	Gasterosteus_aculeatus
ENSCSAVG00000003833	-	99	56.468	ENSGAGG00000007868	PAN2	91	46.614	Gopherus_agassizii
ENSCSAVG00000003833	-	97	62.099	ENSGGOG00000009115	PAN2	80	61.756	Gorilla_gorilla
ENSCSAVG00000003833	-	97	61.224	ENSHBUG00000005234	pan2	91	46.951	Haplochromis_burtoni
ENSCSAVG00000003833	-	97	62.099	ENSHGLG00000005647	PAN2	74	62.099	Heterocephalus_glaber_female
ENSCSAVG00000003833	-	97	62.099	ENSHGLG00100014057	PAN2	74	62.099	Heterocephalus_glaber_male
ENSCSAVG00000003833	-	99	51.717	ENSHCOG00000007920	pan2	90	46.987	Hippocampus_comes
ENSCSAVG00000003833	-	97	61.808	ENSIPUG00000011065	PAN2	91	46.941	Ictalurus_punctatus
ENSCSAVG00000003833	-	96	56.851	ENSSTOG00000015974	PAN2	78	56.851	Ictidomys_tridecemlineatus
ENSCSAVG00000003833	-	97	61.516	ENSJJAG00000013044	Pan2	89	45.557	Jaculus_jaculus
ENSCSAVG00000003833	-	97	60.933	ENSKMAG00000006192	pan2	91	46.487	Kryptolebias_marmoratus
ENSCSAVG00000003833	-	99	49.328	ENSLBEG00000015763	pan2	90	45.543	Labrus_bergylta
ENSCSAVG00000003833	-	98	61.798	ENSLACG00000018694	PAN2	74	61.798	Latimeria_chalumnae
ENSCSAVG00000003833	-	97	62.099	ENSLOCG00000004333	pan2	90	46.261	Lepisosteus_oculatus
ENSCSAVG00000003833	-	97	62.099	ENSLAFG00000014873	PAN2	74	62.099	Loxodonta_africana
ENSCSAVG00000003833	-	97	62.099	ENSMFAG00000002293	PAN2	80	61.756	Macaca_fascicularis
ENSCSAVG00000003833	-	97	62.099	ENSMMUG00000013482	PAN2	79	61.756	Macaca_mulatta
ENSCSAVG00000003833	-	97	62.099	ENSMNEG00000033264	PAN2	80	61.756	Macaca_nemestrina
ENSCSAVG00000003833	-	97	62.099	ENSMLEG00000037388	PAN2	80	61.756	Mandrillus_leucophaeus
ENSCSAVG00000003833	-	98	60.933	ENSMAMG00000001624	pan2	91	46.886	Mastacembelus_armatus
ENSCSAVG00000003833	-	97	61.224	ENSMZEG00005026462	pan2	91	46.503	Maylandia_zebra
ENSCSAVG00000003833	-	74	52.478	ENSMZEG00005028402	-	87	52.959	Maylandia_zebra
ENSCSAVG00000003833	-	72	48.824	ENSMZEG00005028405	-	99	49.254	Maylandia_zebra
ENSCSAVG00000003833	-	99	48.188	ENSMZEG00005026472	pan2	85	46.998	Maylandia_zebra
ENSCSAVG00000003833	-	74	54.810	ENSMZEG00005027796	-	94	55.325	Maylandia_zebra
ENSCSAVG00000003833	-	96	62.382	ENSMGAG00000001439	PAN2	92	46.361	Meleagris_gallopavo
ENSCSAVG00000003833	-	97	62.099	ENSMAUG00000012602	Pan2	91	45.652	Mesocricetus_auratus
ENSCSAVG00000003833	-	97	62.099	ENSMICG00000017661	PAN2	80	60.399	Microcebus_murinus
ENSCSAVG00000003833	-	97	61.808	ENSMOCG00000007191	Pan2	91	46.416	Microtus_ochrogaster
ENSCSAVG00000003833	-	99	51.709	ENSMMOG00000009313	pan2	89	47.249	Mola_mola
ENSCSAVG00000003833	-	98	60.641	ENSMALG00000013377	pan2	90	46.805	Monopterus_albus
ENSCSAVG00000003833	-	99	51.471	MGP_CAROLIEiJ_G0015930	Pan2	91	45.352	Mus_caroli
ENSCSAVG00000003833	-	99	52.463	ENSMUSG00000005682	Pan2	91	45.749	Mus_musculus
ENSCSAVG00000003833	-	99	51.681	MGP_PahariEiJ_G0031154	Pan2	91	45.526	Mus_pahari
ENSCSAVG00000003833	-	99	52.463	MGP_SPRETEiJ_G0016755	Pan2	91	45.662	Mus_spretus
ENSCSAVG00000003833	-	97	62.099	ENSMPUG00000001383	PAN2	91	46.194	Mustela_putorius_furo
ENSCSAVG00000003833	-	97	61.808	ENSMLUG00000006737	PAN2	91	45.932	Myotis_lucifugus
ENSCSAVG00000003833	-	99	55.198	ENSNGAG00000007930	Pan2	85	52.130	Nannospalax_galili
ENSCSAVG00000003833	-	89	70.352	ENSNBRG00000006585	pan2	86	70.352	Neolamprologus_brichardi
ENSCSAVG00000003833	-	74	55.685	ENSNBRG00000006871	-	85	56.213	Neolamprologus_brichardi
ENSCSAVG00000003833	-	97	62.099	ENSNLEG00000017499	PAN2	86	58.290	Nomascus_leucogenys
ENSCSAVG00000003833	-	99	59.726	ENSMEUG00000010125	PAN2	85	52.333	Notamacropus_eugenii
ENSCSAVG00000003833	-	97	62.099	ENSOPRG00000001468	PAN2	75	62.099	Ochotona_princeps
ENSCSAVG00000003833	-	97	62.099	ENSODEG00000007203	PAN2	91	45.478	Octodon_degus
ENSCSAVG00000003833	-	99	51.599	ENSONIG00000016732	pan2	90	46.859	Oreochromis_niloticus
ENSCSAVG00000003833	-	98	53.301	ENSOANG00000005151	PAN2	95	53.431	Ornithorhynchus_anatinus
ENSCSAVG00000003833	-	97	62.099	ENSOCUG00000007227	PAN2	91	45.786	Oryctolagus_cuniculus
ENSCSAVG00000003833	-	98	61.516	ENSORLG00000015195	pan2	76	61.516	Oryzias_latipes
ENSCSAVG00000003833	-	98	61.516	ENSORLG00020000277	pan2	76	61.516	Oryzias_latipes_hni
ENSCSAVG00000003833	-	98	61.516	ENSORLG00015005193	pan2	76	61.516	Oryzias_latipes_hsok
ENSCSAVG00000003833	-	98	61.224	ENSOMEG00000022087	pan2	88	57.181	Oryzias_melastigma
ENSCSAVG00000003833	-	97	62.099	ENSOGAG00000030620	PAN2	91	45.533	Otolemur_garnettii
ENSCSAVG00000003833	-	97	62.099	ENSOARG00000009379	PAN2	91	46.510	Ovis_aries
ENSCSAVG00000003833	-	97	62.099	ENSPPAG00000001208	PAN2	80	61.756	Pan_paniscus
ENSCSAVG00000003833	-	97	62.099	ENSPPRG00000021586	PAN2	91	46.201	Panthera_pardus
ENSCSAVG00000003833	-	96	53.761	ENSPTIG00000012494	PAN2	90	44.531	Panthera_tigris_altaica
ENSCSAVG00000003833	-	97	62.099	ENSPTRG00000052054	PAN2	80	61.756	Pan_troglodytes
ENSCSAVG00000003833	-	97	62.099	ENSPANG00000018906	PAN2	98	46.114	Papio_anubis
ENSCSAVG00000003833	-	99	57.364	ENSPKIG00000003973	pan2	82	57.364	Paramormyrops_kingsleyae
ENSCSAVG00000003833	-	99	51.915	ENSPSIG00000003267	PAN2	91	46.316	Pelodiscus_sinensis
ENSCSAVG00000003833	-	99	51.820	ENSPMGG00000023186	pan2	91	46.900	Periophthalmus_magnuspinnatus
ENSCSAVG00000003833	-	99	55.693	ENSPEMG00000018505	Pan2	91	46.054	Peromyscus_maniculatus_bairdii
ENSCSAVG00000003833	-	99	51.688	ENSPMAG00000004731	pan2	100	45.329	Petromyzon_marinus
ENSCSAVG00000003833	-	99	53.533	ENSPCIG00000024643	PAN2	91	46.235	Phascolarctos_cinereus
ENSCSAVG00000003833	-	99	52.229	ENSPFOG00000008392	pan2	91	46.875	Poecilia_formosa
ENSCSAVG00000003833	-	99	52.903	ENSPLAG00000009198	pan2	91	46.875	Poecilia_latipinna
ENSCSAVG00000003833	-	99	52.229	ENSPMEG00000001484	pan2	91	46.875	Poecilia_mexicana
ENSCSAVG00000003833	-	98	60.933	ENSPREG00000000900	pan2	91	47.012	Poecilia_reticulata
ENSCSAVG00000003833	-	83	62.281	ENSPPYG00000004656	PAN2	86	58.442	Pongo_abelii
ENSCSAVG00000003833	-	97	61.808	ENSPCAG00000011047	PAN2	98	46.201	Procavia_capensis
ENSCSAVG00000003833	-	97	62.099	ENSPCOG00000018263	PAN2	91	46.019	Propithecus_coquereli
ENSCSAVG00000003833	-	95	62.099	ENSPVAG00000007591	PAN2	73	62.099	Pteropus_vampyrus
ENSCSAVG00000003833	-	97	61.224	ENSPNYG00000002629	pan2	91	46.864	Pundamilia_nyererei
ENSCSAVG00000003833	-	97	61.224	ENSPNAG00000027140	pan2	91	46.859	Pygocentrus_nattereri
ENSCSAVG00000003833	-	99	52.575	ENSRNOG00000032441	Pan2	91	45.702	Rattus_norvegicus
ENSCSAVG00000003833	-	97	61.808	ENSRBIG00000029591	PAN2	80	61.473	Rhinopithecus_bieti
ENSCSAVG00000003833	-	97	62.099	ENSRROG00000041950	PAN2	88	58.290	Rhinopithecus_roxellana
ENSCSAVG00000003833	-	86	35.484	YGL094C	-	85	37.173	Saccharomyces_cerevisiae
ENSCSAVG00000003833	-	97	62.099	ENSSBOG00000027343	PAN2	80	61.408	Saimiri_boliviensis_boliviensis
ENSCSAVG00000003833	-	97	62.099	ENSSHAG00000000122	PAN2	98	46.752	Sarcophilus_harrisii
ENSCSAVG00000003833	-	99	52.866	ENSSFOG00015017740	pan2	90	46.951	Scleropages_formosus
ENSCSAVG00000003833	-	99	55.784	ENSSMAG00000020901	pan2	90	46.801	Scophthalmus_maximus
ENSCSAVG00000003833	-	99	51.709	ENSSDUG00000001840	pan2	90	47.350	Seriola_dumerili
ENSCSAVG00000003833	-	99	51.820	ENSSLDG00000013866	pan2	91	47.263	Seriola_lalandi_dorsalis
ENSCSAVG00000003833	-	99	53.004	ENSSARG00000013350	PAN2	83	48.205	Sorex_araneus
ENSCSAVG00000003833	-	99	58.713	ENSSPUG00000004270	PAN2	98	46.161	Sphenodon_punctatus
ENSCSAVG00000003833	-	98	60.350	ENSSPAG00000019970	pan2	90	47.003	Stegastes_partitus
ENSCSAVG00000003833	-	97	62.099	ENSSSCG00000000393	PAN2	91	46.329	Sus_scrofa
ENSCSAVG00000003833	-	97	60.641	ENSTRUG00000014260	pan2	90	47.130	Takifugu_rubripes
ENSCSAVG00000003833	-	99	51.050	ENSTNIG00000012537	pan2	90	46.736	Tetraodon_nigroviridis
ENSCSAVG00000003833	-	99	52.008	ENSTTRG00000007150	PAN2	71	48.210	Tursiops_truncatus
ENSCSAVG00000003833	-	98	62.099	ENSUAMG00000026522	PAN2	75	62.099	Ursus_americanus
ENSCSAVG00000003833	-	97	62.099	ENSUMAG00000017020	PAN2	91	45.794	Ursus_maritimus
ENSCSAVG00000003833	-	81	63.333	ENSVPAG00000007309	PAN2	80	63.333	Vicugna_pacos
ENSCSAVG00000003833	-	97	62.099	ENSVVUG00000021878	PAN2	91	46.194	Vulpes_vulpes
ENSCSAVG00000003833	-	97	62.391	ENSXETG00000009434	pan2	76	61.947	Xenopus_tropicalis
ENSCSAVG00000003833	-	99	45.382	ENSXCOG00000014391	pan2	91	43.368	Xiphophorus_couchianus
ENSCSAVG00000003833	-	99	52.442	ENSXMAG00000011661	pan2	91	46.957	Xiphophorus_maculatus