EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000003870 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 21112 bases
Position: chrreftig_132:498937-520048
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000006465	DEAD	PF00270.29	1.4e-06	1	1
ENSCSAVP00000006463	DEAD	PF00270.29	1.6e-06	1	1
ENSCSAVP00000006461	DEAD	PF00270.29	1.9e-06	1	1
ENSCSAVP00000006462	DEAD	PF00270.29	1.9e-06	1	1
ENSCSAVP00000006464	DEAD	PF00270.29	2e-06	1	1
ENSCSAVP00000006465	HA2	PF04408.23	2.8e-20	1	1
ENSCSAVP00000006464	HA2	PF04408.23	3.6e-20	1	1
ENSCSAVP00000006462	HA2	PF04408.23	3.6e-20	1	1
ENSCSAVP00000006461	HA2	PF04408.23	3.7e-20	1	1
ENSCSAVP00000006463	HA2	PF04408.23	2.7e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000006543	-	3144	-	ENSCSAVP00000006461	1047 (aa)	-	H2YMA9
ENSCSAVT00000006547	-	2580	-	ENSCSAVP00000006465	859 (aa)	-	H2YMB3
ENSCSAVT00000006546	-	3075	-	ENSCSAVP00000006464	1025 (aa)	-	H2YMB2
ENSCSAVT00000006545	-	2859	-	ENSCSAVP00000006463	952 (aa)	-	H2YMB1
ENSCSAVT00000006544	-	3126	-	ENSCSAVP00000006462	1042 (aa)	-	H2YMB0

Gene Model

Click here to download ENSCSAVG00000003870's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003870's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000003870	-	59	38.500	ENSCSAVG00000001493	-	51	32.149
ENSCSAVG00000003870	-	72	59.355	ENSCSAVG00000002918	-	57	59.355
ENSCSAVG00000003870	-	64	30.449	ENSCSAVG00000002146	-	50	30.449
ENSCSAVG00000003870	-	75	51.084	ENSCSAVG00000001117	-	99	51.911
ENSCSAVG00000003870	-	73	41.935	ENSCSAVG00000009212	-	70	37.919
ENSCSAVG00000003870	-	64	33.733	ENSCSAVG00000009685	-	77	38.991
ENSCSAVG00000003870	-	70	43.192	ENSCSAVG00000008110	-	77	43.192

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003870	-	94	76.497	ENSG00000204560	DHX16	95	77.757	Homo_sapiens
ENSCSAVG00000003870	-	99	65.810	ENSAPOG00000008825	dhx16	99	62.193	Acanthochromis_polyacanthus
ENSCSAVG00000003870	-	95	77.982	ENSAMEG00000013213	DHX16	99	61.333	Ailuropoda_melanoleuca
ENSCSAVG00000003870	-	99	64.495	ENSACIG00000021825	dhx16	99	64.589	Amphilophus_citrinellus
ENSCSAVG00000003870	-	99	81.109	ENSAOCG00000024217	dhx16	99	65.693	Amphiprion_ocellaris
ENSCSAVG00000003870	-	100	64.535	ENSAPEG00000022508	dhx16	99	63.099	Amphiprion_percula
ENSCSAVG00000003870	-	93	80.660	ENSATEG00000006665	dhx16	99	64.873	Anabas_testudineus
ENSCSAVG00000003870	-	93	80.514	ENSACAG00000010952	DHX16	99	62.383	Anolis_carolinensis
ENSCSAVG00000003870	-	93	77.238	ENSANAG00000024212	DHX16	95	77.570	Aotus_nancymaae
ENSCSAVG00000003870	-	93	80.810	ENSACLG00000010932	dhx16	89	80.810	Astatotilapia_calliptera
ENSCSAVG00000003870	-	98	80.360	ENSAMXG00000005181	dhx16	93	75.000	Astyanax_mexicanus
ENSCSAVG00000003870	-	93	78.287	ENSBTAG00000006960	DHX16	99	61.429	Bos_taurus
ENSCSAVG00000003870	-	99	56.212	WBGene00003392	mog-4	99	56.030	Caenorhabditis_elegans
ENSCSAVG00000003870	-	93	77.390	ENSCJAG00000019914	DHX16	94	78.368	Callithrix_jacchus
ENSCSAVG00000003870	-	93	78.135	ENSCAFG00000000427	DHX16	99	61.217	Canis_familiaris
ENSCSAVG00000003870	-	94	77.211	ENSCAFG00020017623	DHX16	96	79.087	Canis_lupus_dingo
ENSCSAVG00000003870	-	93	76.462	ENSCHIG00000013356	DHX16	99	60.395	Capra_hircus
ENSCSAVG00000003870	-	95	76.647	ENSTSYG00000029805	DHX16	98	77.799	Carlito_syrichta
ENSCSAVG00000003870	-	95	77.795	ENSCAPG00000000092	DHX16	85	77.676	Cavia_aperea
ENSCSAVG00000003870	-	95	77.795	ENSCPOG00000015415	DHX16	89	76.000	Cavia_porcellus
ENSCSAVG00000003870	-	93	77.238	ENSCCAG00000025435	DHX16	94	78.517	Cebus_capucinus
ENSCSAVG00000003870	-	94	76.647	ENSCATG00000021666	DHX16	98	76.923	Cercocebus_atys
ENSCSAVG00000003870	-	95	77.489	ENSCLAG00000002398	DHX16	89	76.347	Chinchilla_lanigera
ENSCSAVG00000003870	-	94	76.647	ENSCSAG00000008258	DHX16	99	61.238	Chlorocebus_sabaeus
ENSCSAVG00000003870	-	76	70.795	ENSCHOG00000001224	DHX16	80	69.461	Choloepus_hoffmanni
ENSCSAVG00000003870	-	95	80.030	ENSCPBG00000018837	DHX16	99	64.178	Chrysemys_picta_bellii
ENSCSAVG00000003870	-	63	95.963	ENSCING00000006565	-	100	95.963	Ciona_intestinalis
ENSCSAVG00000003870	-	94	76.497	ENSCANG00000043736	DHX16	94	78.368	Colobus_angolensis_palliatus
ENSCSAVG00000003870	-	96	77.693	ENSCGRG00001008329	Dhx16	99	61.443	Cricetulus_griseus_chok1gshd
ENSCSAVG00000003870	-	96	75.940	ENSCGRG00000014687	Dhx16	100	60.749	Cricetulus_griseus_crigri
ENSCSAVG00000003870	-	98	79.848	ENSCSEG00000012134	dhx16	99	64.617	Cynoglossus_semilaevis
ENSCSAVG00000003870	-	99	53.162	ENSCVAG00000007009	dhx16	99	53.162	Cyprinodon_variegatus
ENSCSAVG00000003870	-	99	64.535	ENSDARG00000013150	dhx16	99	64.212	Danio_rerio
ENSCSAVG00000003870	-	64	76.019	ENSDNOG00000030864	DHX16	100	54.557	Dasypus_novemcinctus
ENSCSAVG00000003870	-	94	76.796	ENSDORG00000003203	Dhx16	99	61.238	Dipodomys_ordii
ENSCSAVG00000003870	-	94	74.545	FBgn0086444	l(2)37Cb	92	74.545	Drosophila_melanogaster
ENSCSAVG00000003870	-	95	77.370	ENSETEG00000003121	DHX16	99	60.683	Echinops_telfairi
ENSCSAVG00000003870	-	95	79.968	ENSEBUG00000001802	dhx16	93	74.000	Eptatretus_burgeri
ENSCSAVG00000003870	-	96	64.166	ENSEASG00005019124	DHX16	98	77.621	Equus_asinus_asinus
ENSCSAVG00000003870	-	95	78.135	ENSECAG00000008537	DHX16	99	61.429	Equus_caballus
ENSCSAVG00000003870	-	93	79.821	ENSELUG00000015727	dhx16	99	64.185	Esox_lucius
ENSCSAVG00000003870	-	95	78.287	ENSFCAG00000007693	DHX16	99	61.678	Felis_catus
ENSCSAVG00000003870	-	95	77.096	ENSFDAG00000017458	DHX16	88	77.096	Fukomys_damarensis
ENSCSAVG00000003870	-	99	80.606	ENSFHEG00000021509	dhx16	99	64.678	Fundulus_heteroclitus
ENSCSAVG00000003870	-	93	78.149	ENSGMOG00000009282	dhx16	99	62.643	Gadus_morhua
ENSCSAVG00000003870	-	98	80.389	ENSGAFG00000014389	dhx16	99	65.530	Gambusia_affinis
ENSCSAVG00000003870	-	99	80.606	ENSGACG00000001768	dhx16	90	80.606	Gasterosteus_aculeatus
ENSCSAVG00000003870	-	95	80.330	ENSGAGG00000003115	DHX16	90	80.330	Gopherus_agassizii
ENSCSAVG00000003870	-	94	76.497	ENSGGOG00000022943	DHX16	95	77.757	Gorilla_gorilla
ENSCSAVG00000003870	-	97	76.515	ENSHBUG00000009952	dhx16	99	62.417	Haplochromis_burtoni
ENSCSAVG00000003870	-	95	78.135	ENSHGLG00000019290	DHX16	82	78.135	Heterocephalus_glaber_female
ENSCSAVG00000003870	-	95	77.982	ENSHGLG00100017127	DHX16	82	77.982	Heterocephalus_glaber_male
ENSCSAVG00000003870	-	99	79.910	ENSHCOG00000006805	dhx16	99	64.528	Hippocampus_comes
ENSCSAVG00000003870	-	92	79.760	ENSIPUG00000001025	DHX16	99	64.340	Ictalurus_punctatus
ENSCSAVG00000003870	-	97	76.946	ENSSTOG00000011881	DHX16	99	61.333	Ictidomys_tridecemlineatus
ENSCSAVG00000003870	-	96	77.693	ENSJJAG00000000186	Dhx16	99	62.898	Jaculus_jaculus
ENSCSAVG00000003870	-	93	80.090	ENSKMAG00000009246	dhx16	99	65.250	Kryptolebias_marmoratus
ENSCSAVG00000003870	-	93	78.030	ENSLBEG00000017249	dhx16	99	62.949	Labrus_bergylta
ENSCSAVG00000003870	-	70	71.686	ENSLACG00000002450	DHX16	99	71.947	Latimeria_chalumnae
ENSCSAVG00000003870	-	95	77.982	ENSLAFG00000026904	DHX16	99	61.656	Loxodonta_africana
ENSCSAVG00000003870	-	94	76.647	ENSMFAG00000003575	DHX16	96	77.966	Macaca_fascicularis
ENSCSAVG00000003870	-	94	76.647	ENSMMUG00000019960	DHX16	96	78.368	Macaca_mulatta
ENSCSAVG00000003870	-	94	76.647	ENSMNEG00000014580	DHX16	96	77.966	Macaca_nemestrina
ENSCSAVG00000003870	-	94	76.647	ENSMLEG00000043805	DHX16	96	77.966	Mandrillus_leucophaeus
ENSCSAVG00000003870	-	93	80.149	ENSMAMG00000009784	dhx16	99	65.468	Mastacembelus_armatus
ENSCSAVG00000003870	-	93	81.212	ENSMZEG00005027755	dhx16	99	65.250	Maylandia_zebra
ENSCSAVG00000003870	-	94	77.693	ENSMAUG00000001696	Dhx16	99	61.106	Mesocricetus_auratus
ENSCSAVG00000003870	-	96	76.796	ENSMICG00000014819	DHX16	95	78.748	Microcebus_murinus
ENSCSAVG00000003870	-	94	77.693	ENSMOCG00000010715	Dhx16	99	61.692	Microtus_ochrogaster
ENSCSAVG00000003870	-	93	79.242	ENSMMOG00000016621	dhx16	99	63.920	Mola_mola
ENSCSAVG00000003870	-	95	76.796	ENSMODG00000015890	DHX16	91	76.796	Monodelphis_domestica
ENSCSAVG00000003870	-	99	79.091	ENSMALG00000003384	dhx16	99	62.406	Monopterus_albus
ENSCSAVG00000003870	-	96	76.946	MGP_CAROLIEiJ_G0021538	Dhx16	100	62.614	Mus_caroli
ENSCSAVG00000003870	-	96	76.946	ENSMUSG00000024422	Dhx16	99	61.010	Mus_musculus
ENSCSAVG00000003870	-	96	76.796	MGP_PahariEiJ_G0020532	Dhx16	99	61.254	Mus_pahari
ENSCSAVG00000003870	-	95	72.904	MGP_SPRETEiJ_G0022445	Dhx16	99	58.437	Mus_spretus
ENSCSAVG00000003870	-	95	77.829	ENSMPUG00000011719	DHX16	94	61.238	Mustela_putorius_furo
ENSCSAVG00000003870	-	92	74.963	ENSMLUG00000008932	DHX16	95	74.355	Myotis_lucifugus
ENSCSAVG00000003870	-	94	77.576	ENSNGAG00000001106	Dhx16	99	60.837	Nannospalax_galili
ENSCSAVG00000003870	-	92	81.212	ENSNBRG00000005624	dhx16	99	65.132	Neolamprologus_brichardi
ENSCSAVG00000003870	-	93	76.241	ENSNLEG00000005270	DHX16	98	76.044	Nomascus_leucogenys
ENSCSAVG00000003870	-	84	81.325	ENSMEUG00000012522	DHX16	85	78.226	Notamacropus_eugenii
ENSCSAVG00000003870	-	95	77.390	ENSOPRG00000001864	DHX16	99	61.143	Ochotona_princeps
ENSCSAVG00000003870	-	61	78.450	ENSODEG00000017885	DHX16	99	78.450	Octodon_degus
ENSCSAVG00000003870	-	93	80.597	ENSONIG00000002234	dhx16	99	65.005	Oreochromis_niloticus
ENSCSAVG00000003870	-	93	77.086	ENSOCUG00000002163	DHX16	99	61.275	Oryctolagus_cuniculus
ENSCSAVG00000003870	-	100	80.660	ENSORLG00000015982	dhx16	99	81.238	Oryzias_latipes
ENSCSAVG00000003870	-	100	80.660	ENSORLG00020014134	dhx16	99	66.036	Oryzias_latipes_hni
ENSCSAVG00000003870	-	100	80.660	ENSORLG00015020617	dhx16	99	80.907	Oryzias_latipes_hsok
ENSCSAVG00000003870	-	99	80.810	ENSOMEG00000019560	dhx16	99	65.817	Oryzias_melastigma
ENSCSAVG00000003870	-	96	76.796	ENSOGAG00000008300	DHX16	99	61.619	Otolemur_garnettii
ENSCSAVG00000003870	-	93	76.453	ENSOARG00000012046	DHX16	99	60.190	Ovis_aries
ENSCSAVG00000003870	-	94	76.497	ENSPPAG00000025169	DHX16	95	77.757	Pan_paniscus
ENSCSAVG00000003870	-	95	78.287	ENSPPRG00000000329	DHX16	99	61.678	Panthera_pardus
ENSCSAVG00000003870	-	95	77.557	ENSPTIG00000010694	DHX16	99	61.238	Panthera_tigris_altaica
ENSCSAVG00000003870	-	93	77.238	ENSPTRG00000017935	DHX16	95	77.757	Pan_troglodytes
ENSCSAVG00000003870	-	62	77.799	ENSPANG00000018482	DHX16	96	77.966	Papio_anubis
ENSCSAVG00000003870	-	93	80.000	ENSPKIG00000012693	dhx16	99	63.902	Paramormyrops_kingsleyae
ENSCSAVG00000003870	-	99	56.410	ENSPSIG00000012007	DHX16	99	56.641	Pelodiscus_sinensis
ENSCSAVG00000003870	-	99	62.791	ENSPMGG00000000154	dhx16	99	63.723	Periophthalmus_magnuspinnatus
ENSCSAVG00000003870	-	96	77.693	ENSPEMG00000017508	Dhx16	99	61.443	Peromyscus_maniculatus_bairdii
ENSCSAVG00000003870	-	94	77.390	ENSPCIG00000014991	DHX16	93	78.000	Phascolarctos_cinereus
ENSCSAVG00000003870	-	98	81.364	ENSPFOG00000002575	dhx16	99	66.161	Poecilia_formosa
ENSCSAVG00000003870	-	98	81.212	ENSPLAG00000014305	dhx16	99	65.687	Poecilia_latipinna
ENSCSAVG00000003870	-	98	81.364	ENSPMEG00000006632	dhx16	99	66.256	Poecilia_mexicana
ENSCSAVG00000003870	-	98	81.061	ENSPREG00000003371	dhx16	99	66.066	Poecilia_reticulata
ENSCSAVG00000003870	-	92	76.497	ENSPPYG00000016415	DHX16	99	61.048	Pongo_abelii
ENSCSAVG00000003870	-	99	61.628	ENSPCAG00000017034	DHX16	99	57.674	Procavia_capensis
ENSCSAVG00000003870	-	96	76.796	ENSPCOG00000013298	DHX16	99	75.993	Propithecus_coquereli
ENSCSAVG00000003870	-	91	72.624	ENSPVAG00000003984	DHX16	89	74.370	Pteropus_vampyrus
ENSCSAVG00000003870	-	97	67.209	ENSPNYG00000018755	dhx16	99	63.708	Pundamilia_nyererei
ENSCSAVG00000003870	-	99	80.210	ENSPNAG00000018065	dhx16	99	65.127	Pygocentrus_nattereri
ENSCSAVG00000003870	-	96	77.576	ENSRNOG00000030157	Dhx16	99	61.275	Rattus_norvegicus
ENSCSAVG00000003870	-	94	76.647	ENSRBIG00000039655	DHX16	94	78.558	Rhinopithecus_bieti
ENSCSAVG00000003870	-	94	76.647	ENSRROG00000031909	DHX16	94	78.558	Rhinopithecus_roxellana
ENSCSAVG00000003870	-	75	50.368	YNR011C	PRP2	77	50.368	Saccharomyces_cerevisiae
ENSCSAVG00000003870	-	93	77.238	ENSSBOG00000020142	DHX16	95	77.570	Saimiri_boliviensis_boliviensis
ENSCSAVG00000003870	-	94	77.542	ENSSHAG00000007234	DHX16	99	61.164	Sarcophilus_harrisii
ENSCSAVG00000003870	-	92	80.152	ENSSFOG00015019853	dhx16	98	64.939	Scleropages_formosus
ENSCSAVG00000003870	-	88	80.142	ENSSMAG00000019598	dhx16	99	61.022	Scophthalmus_maximus
ENSCSAVG00000003870	-	93	80.510	ENSSDUG00000006948	dhx16	99	64.967	Seriola_dumerili
ENSCSAVG00000003870	-	98	80.510	ENSSLDG00000012742	dhx16	99	64.901	Seriola_lalandi_dorsalis
ENSCSAVG00000003870	-	94	80.635	ENSSPUG00000015145	DHX16	100	63.568	Sphenodon_punctatus
ENSCSAVG00000003870	-	99	80.810	ENSSPAG00000012416	dhx16	99	77.632	Stegastes_partitus
ENSCSAVG00000003870	-	93	77.795	ENSSSCG00000001376	DHX16	99	61.048	Sus_scrofa
ENSCSAVG00000003870	-	99	80.303	ENSTRUG00000004927	dhx16	99	64.650	Takifugu_rubripes
ENSCSAVG00000003870	-	99	63.372	ENSTNIG00000011641	dhx16	99	62.949	Tetraodon_nigroviridis
ENSCSAVG00000003870	-	85	76.647	ENSTTRG00000008323	DHX16	84	69.779	Tursiops_truncatus
ENSCSAVG00000003870	-	95	77.676	ENSUAMG00000026299	DHX16	99	79.271	Ursus_americanus
ENSCSAVG00000003870	-	95	78.287	ENSUMAG00000019661	DHX16	94	61.619	Ursus_maritimus
ENSCSAVG00000003870	-	93	78.287	ENSVVUG00000009831	DHX16	99	61.312	Vulpes_vulpes
ENSCSAVG00000003870	-	80	81.179	ENSXETG00000024069	dhx16	99	56.716	Xenopus_tropicalis
ENSCSAVG00000003870	-	92	75.000	ENSXCOG00000003774	dhx16	92	75.000	Xiphophorus_couchianus
ENSCSAVG00000003870	-	99	65.491	ENSXMAG00000013293	dhx16	99	65.810	Xiphophorus_maculatus