EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000003949 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 762 bases
Position: chrreftig_13:401752-402513
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000006588	PTS_2-RNA	PF01885.16	6.2e-60	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000006672	-	654	-	ENSCSAVP00000006588	218 (aa)	-	H2YMN6

Gene Model

Click here to download ENSCSAVG00000003949's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000003949's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000003949	-	97	42.593	ENSCSAVG00000011071	-	64	42.593

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000003949	-	99	39.732	ENSG00000149743	TRPT1	99	38.144	Homo_sapiens
ENSCSAVG00000003949	-	88	42.640	ENSAPOG00000012925	trpt1	91	42.202	Acanthochromis_polyacanthus
ENSCSAVG00000003949	-	88	41.327	ENSAMEG00000018040	TRPT1	85	40.455	Ailuropoda_melanoleuca
ENSCSAVG00000003949	-	87	46.154	ENSACIG00000022413	trpt1	92	43.836	Amphilophus_citrinellus
ENSCSAVG00000003949	-	88	43.655	ENSAOCG00000001163	trpt1	81	42.922	Amphiprion_ocellaris
ENSCSAVG00000003949	-	88	43.655	ENSAPEG00000009873	trpt1	92	43.119	Amphiprion_percula
ENSCSAVG00000003949	-	87	42.051	ENSATEG00000014371	trpt1	92	40.553	Anabas_testudineus
ENSCSAVG00000003949	-	89	44.000	ENSACAG00000000696	TRPT1	87	44.000	Anolis_carolinensis
ENSCSAVG00000003949	-	99	41.071	ENSANAG00000019580	TRPT1	87	41.071	Aotus_nancymaae
ENSCSAVG00000003949	-	88	44.670	ENSACLG00000016893	trpt1	92	43.519	Astatotilapia_calliptera
ENSCSAVG00000003949	-	87	42.640	ENSAMXG00000010533	trpt1	91	41.509	Astyanax_mexicanus
ENSCSAVG00000003949	-	99	37.778	ENSBTAG00000016555	TRPT1	84	39.773	Bos_taurus
ENSCSAVG00000003949	-	98	39.367	ENSCJAG00000018169	TRPT1	85	39.367	Callithrix_jacchus
ENSCSAVG00000003949	-	89	41.000	ENSCAFG00000014591	TRPT1	87	39.207	Canis_familiaris
ENSCSAVG00000003949	-	89	41.000	ENSCAFG00020014101	TRPT1	91	39.207	Canis_lupus_dingo
ENSCSAVG00000003949	-	99	37.778	ENSCHIG00000021308	TRPT1	87	38.739	Capra_hircus
ENSCSAVG00000003949	-	77	39.535	ENSTSYG00000026766	TRPT1	84	39.535	Carlito_syrichta
ENSCSAVG00000003949	-	94	40.952	ENSCAPG00000016934	TRPT1	85	40.952	Cavia_aperea
ENSCSAVG00000003949	-	99	40.625	ENSCPOG00000002923	TRPT1	88	40.625	Cavia_porcellus
ENSCSAVG00000003949	-	77	41.279	ENSCCAG00000025683	TRPT1	84	41.279	Cebus_capucinus
ENSCSAVG00000003949	-	99	39.381	ENSCATG00000031563	TRPT1	87	39.381	Cercocebus_atys
ENSCSAVG00000003949	-	96	39.631	ENSCLAG00000016380	TRPT1	85	39.631	Chinchilla_lanigera
ENSCSAVG00000003949	-	98	40.090	ENSCSAG00000006952	TRPT1	86	40.090	Chlorocebus_sabaeus
ENSCSAVG00000003949	-	85	60.428	ENSCING00000024241	-	77	60.428	Ciona_intestinalis
ENSCSAVG00000003949	-	64	46.154	ENSCING00000002405	-	78	46.154	Ciona_intestinalis
ENSCSAVG00000003949	-	99	39.823	ENSCANG00000042980	TRPT1	87	39.823	Colobus_angolensis_palliatus
ENSCSAVG00000003949	-	99	39.013	ENSCGRG00001008474	Trpt1	86	39.013	Cricetulus_griseus_chok1gshd
ENSCSAVG00000003949	-	99	39.013	ENSCGRG00000009793	Trpt1	86	39.013	Cricetulus_griseus_crigri
ENSCSAVG00000003949	-	88	43.147	ENSCSEG00000005840	trpt1	91	40.909	Cynoglossus_semilaevis
ENSCSAVG00000003949	-	95	40.845	ENSCVAG00000006318	trpt1	96	40.845	Cyprinodon_variegatus
ENSCSAVG00000003949	-	87	43.878	ENSDARG00000037628	trpt1	92	42.593	Danio_rerio
ENSCSAVG00000003949	-	97	35.047	ENSDNOG00000044923	TRPT1	76	35.047	Dasypus_novemcinctus
ENSCSAVG00000003949	-	98	38.462	ENSDORG00000001624	Trpt1	79	39.899	Dipodomys_ordii
ENSCSAVG00000003949	-	87	38.265	FBgn0053057	CG33057	90	38.265	Drosophila_melanogaster
ENSCSAVG00000003949	-	95	46.047	ENSEBUG00000012569	-	89	50.000	Eptatretus_burgeri
ENSCSAVG00000003949	-	99	39.732	ENSEASG00005019983	TRPT1	87	39.732	Equus_asinus_asinus
ENSCSAVG00000003949	-	98	39.367	ENSECAG00000009917	TRPT1	86	40.102	Equus_caballus
ENSCSAVG00000003949	-	96	41.121	ENSEEUG00000012739	TRPT1	83	41.121	Erinaceus_europaeus
ENSCSAVG00000003949	-	88	43.147	ENSELUG00000007385	trpt1	90	43.062	Esox_lucius
ENSCSAVG00000003949	-	99	38.393	ENSFCAG00000024621	TRPT1	87	38.393	Felis_catus
ENSCSAVG00000003949	-	98	39.091	ENSFDAG00000002738	TRPT1	86	39.091	Fukomys_damarensis
ENSCSAVG00000003949	-	89	43.000	ENSFHEG00000002434	trpt1	92	41.475	Fundulus_heteroclitus
ENSCSAVG00000003949	-	88	39.086	ENSGMOG00000008716	trpt1	94	39.086	Gadus_morhua
ENSCSAVG00000003949	-	91	41.791	ENSGALG00000050256	TRPT1	66	41.919	Gallus_gallus
ENSCSAVG00000003949	-	88	42.640	ENSGAFG00000016762	trpt1	93	41.014	Gambusia_affinis
ENSCSAVG00000003949	-	89	43.781	ENSGACG00000016927	trpt1	97	42.152	Gasterosteus_aculeatus
ENSCSAVG00000003949	-	99	39.732	ENSGGOG00000012163	TRPT1	87	39.732	Gorilla_gorilla
ENSCSAVG00000003949	-	88	45.178	ENSHBUG00000012772	trpt1	92	43.981	Haplochromis_burtoni
ENSCSAVG00000003949	-	96	39.631	ENSHGLG00000013748	TRPT1	85	39.631	Heterocephalus_glaber_female
ENSCSAVG00000003949	-	96	39.631	ENSHGLG00100013048	TRPT1	85	39.631	Heterocephalus_glaber_male
ENSCSAVG00000003949	-	89	43.781	ENSHCOG00000000218	trpt1	91	41.704	Hippocampus_comes
ENSCSAVG00000003949	-	87	39.286	ENSIPUG00000002573	trpt1	93	37.900	Ictalurus_punctatus
ENSCSAVG00000003949	-	99	39.732	ENSSTOG00000014285	TRPT1	87	39.732	Ictidomys_tridecemlineatus
ENSCSAVG00000003949	-	99	38.739	ENSJJAG00000010855	Trpt1	87	38.739	Jaculus_jaculus
ENSCSAVG00000003949	-	86	46.392	ENSKMAG00000004214	trpt1	89	44.811	Kryptolebias_marmoratus
ENSCSAVG00000003949	-	88	46.193	ENSLBEG00000005640	trpt1	93	44.495	Labrus_bergylta
ENSCSAVG00000003949	-	88	45.408	ENSLACG00000016922	TRPT1	88	44.495	Latimeria_chalumnae
ENSCSAVG00000003949	-	88	43.147	ENSLOCG00000001345	trpt1	86	42.857	Lepisosteus_oculatus
ENSCSAVG00000003949	-	89	40.500	ENSLAFG00000009075	TRPT1	77	40.500	Loxodonta_africana
ENSCSAVG00000003949	-	99	39.381	ENSMFAG00000036828	TRPT1	87	39.381	Macaca_fascicularis
ENSCSAVG00000003949	-	99	39.286	ENSMMUG00000012940	TRPT1	87	39.286	Macaca_mulatta
ENSCSAVG00000003949	-	99	39.381	ENSMNEG00000033348	TRPT1	87	39.381	Macaca_nemestrina
ENSCSAVG00000003949	-	99	39.823	ENSMLEG00000031438	TRPT1	87	39.823	Mandrillus_leucophaeus
ENSCSAVG00000003949	-	88	43.655	ENSMAMG00000021617	trpt1	91	42.396	Mastacembelus_armatus
ENSCSAVG00000003949	-	88	45.178	ENSMZEG00005004773	trpt1	92	43.981	Maylandia_zebra
ENSCSAVG00000003949	-	66	44.295	ENSMAUG00000014107	Trpt1	72	44.295	Mesocricetus_auratus
ENSCSAVG00000003949	-	94	39.524	ENSMICG00000016950	TRPT1	81	39.524	Microcebus_murinus
ENSCSAVG00000003949	-	99	39.910	ENSMOCG00000021342	Trpt1	86	39.910	Microtus_ochrogaster
ENSCSAVG00000003949	-	88	43.655	ENSMMOG00000002896	trpt1	91	42.857	Mola_mola
ENSCSAVG00000003949	-	94	40.476	ENSMODG00000010226	TRPT1	94	40.476	Monodelphis_domestica
ENSCSAVG00000003949	-	88	41.624	ENSMALG00000012208	trpt1	84	41.232	Monopterus_albus
ENSCSAVG00000003949	-	99	39.462	MGP_CAROLIEiJ_G0022627	Trpt1	86	39.462	Mus_caroli
ENSCSAVG00000003949	-	99	39.462	ENSMUSG00000047656	Trpt1	86	39.462	Mus_musculus
ENSCSAVG00000003949	-	95	40.000	MGP_PahariEiJ_G0014121	Trpt1	85	40.000	Mus_pahari
ENSCSAVG00000003949	-	99	39.462	MGP_SPRETEiJ_G0023537	Trpt1	86	39.462	Mus_spretus
ENSCSAVG00000003949	-	99	40.179	ENSMPUG00000013272	TRPT1	80	40.179	Mustela_putorius_furo
ENSCSAVG00000003949	-	89	41.500	ENSMLUG00000024858	TRPT1	83	40.654	Myotis_lucifugus
ENSCSAVG00000003949	-	78	39.326	ENSNGAG00000007665	Trpt1	84	39.326	Nannospalax_galili
ENSCSAVG00000003949	-	89	41.204	ENSNBRG00000001528	trpt1	87	41.204	Neolamprologus_brichardi
ENSCSAVG00000003949	-	99	31.718	ENSNLEG00000033525	-	87	31.718	Nomascus_leucogenys
ENSCSAVG00000003949	-	88	42.857	ENSMEUG00000000943	TRPT1	83	42.254	Notamacropus_eugenii
ENSCSAVG00000003949	-	99	41.071	ENSOPRG00000015917	TRPT1	88	41.071	Ochotona_princeps
ENSCSAVG00000003949	-	99	40.807	ENSODEG00000015724	TRPT1	88	40.807	Octodon_degus
ENSCSAVG00000003949	-	88	44.162	ENSONIG00000005333	trpt1	84	44.162	Oreochromis_niloticus
ENSCSAVG00000003949	-	88	41.117	ENSOANG00000010375	TRPT1	90	40.580	Ornithorhynchus_anatinus
ENSCSAVG00000003949	-	98	38.914	ENSOCUG00000022244	TRPT1	86	38.914	Oryctolagus_cuniculus
ENSCSAVG00000003949	-	96	41.204	ENSORLG00000025159	trpt1	92	41.204	Oryzias_latipes
ENSCSAVG00000003949	-	94	41.429	ENSORLG00020018944	trpt1	92	41.429	Oryzias_latipes_hni
ENSCSAVG00000003949	-	81	42.077	ENSORLG00015017108	trpt1	78	42.077	Oryzias_latipes_hsok
ENSCSAVG00000003949	-	86	44.330	ENSOMEG00000018645	trpt1	85	44.330	Oryzias_melastigma
ENSCSAVG00000003949	-	88	40.816	ENSOGAG00000007134	TRPT1	76	40.816	Otolemur_garnettii
ENSCSAVG00000003949	-	99	37.778	ENSOARG00000004961	TRPT1	87	37.778	Ovis_aries
ENSCSAVG00000003949	-	83	37.766	ENSPPAG00000027600	TRPT1	84	39.773	Pan_paniscus
ENSCSAVG00000003949	-	83	37.234	ENSPPRG00000022870	TRPT1	84	39.205	Panthera_pardus
ENSCSAVG00000003949	-	66	43.243	ENSPTIG00000018872	TRPT1	73	43.243	Panthera_tigris_altaica
ENSCSAVG00000003949	-	83	37.766	ENSPTRG00000003822	TRPT1	84	39.773	Pan_troglodytes
ENSCSAVG00000003949	-	99	39.381	ENSPANG00000011001	TRPT1	87	39.381	Papio_anubis
ENSCSAVG00000003949	-	88	44.162	ENSPKIG00000008323	trpt1	89	42.396	Paramormyrops_kingsleyae
ENSCSAVG00000003949	-	94	42.654	ENSPSIG00000009910	TRPT1	86	42.654	Pelodiscus_sinensis
ENSCSAVG00000003949	-	93	44.019	ENSPMGG00000005037	trpt1	90	44.019	Periophthalmus_magnuspinnatus
ENSCSAVG00000003949	-	94	38.571	ENSPEMG00000013720	Trpt1	83	38.571	Peromyscus_maniculatus_bairdii
ENSCSAVG00000003949	-	87	40.513	ENSPMAG00000001449	trpt1	91	40.513	Petromyzon_marinus
ENSCSAVG00000003949	-	88	40.816	ENSPCIG00000008060	TRPT1	87	40.000	Phascolarctos_cinereus
ENSCSAVG00000003949	-	88	42.132	ENSPFOG00000009475	trpt1	92	40.553	Poecilia_formosa
ENSCSAVG00000003949	-	88	41.624	ENSPMEG00000003682	trpt1	92	40.092	Poecilia_mexicana
ENSCSAVG00000003949	-	88	42.132	ENSPREG00000015408	trpt1	92	41.014	Poecilia_reticulata
ENSCSAVG00000003949	-	99	40.179	ENSPPYG00000003116	TRPT1	87	40.179	Pongo_abelii
ENSCSAVG00000003949	-	96	39.535	ENSPCAG00000000762	TRPT1	84	39.535	Procavia_capensis
ENSCSAVG00000003949	-	94	39.524	ENSPCOG00000010370	TRPT1	81	39.524	Propithecus_coquereli
ENSCSAVG00000003949	-	88	41.981	ENSPNYG00000014805	trpt1	92	41.126	Pundamilia_nyererei
ENSCSAVG00000003949	-	87	41.837	ENSPNAG00000008548	trpt1	91	40.758	Pygocentrus_nattereri
ENSCSAVG00000003949	-	99	39.013	ENSRNOG00000023023	Trpt1	87	39.013	Rattus_norvegicus
ENSCSAVG00000003949	-	99	40.625	ENSRBIG00000040432	TRPT1	87	40.625	Rhinopithecus_bieti
ENSCSAVG00000003949	-	99	40.179	ENSRROG00000044905	TRPT1	87	40.179	Rhinopithecus_roxellana
ENSCSAVG00000003949	-	80	37.297	YOL102C	TPT1	79	37.297	Saccharomyces_cerevisiae
ENSCSAVG00000003949	-	99	40.625	ENSSBOG00000021466	TRPT1	87	40.625	Saimiri_boliviensis_boliviensis
ENSCSAVG00000003949	-	88	42.640	ENSSFOG00015005844	trpt1	92	42.180	Scleropages_formosus
ENSCSAVG00000003949	-	88	43.147	ENSSMAG00000017744	trpt1	93	42.396	Scophthalmus_maximus
ENSCSAVG00000003949	-	88	42.132	ENSSDUG00000017106	trpt1	89	41.627	Seriola_dumerili
ENSCSAVG00000003949	-	88	41.624	ENSSLDG00000015957	trpt1	89	41.667	Seriola_lalandi_dorsalis
ENSCSAVG00000003949	-	78	44.571	ENSSPAG00000007557	trpt1	70	44.571	Stegastes_partitus
ENSCSAVG00000003949	-	94	40.284	ENSSSCG00000013040	TRPT1	79	40.284	Sus_scrofa
ENSCSAVG00000003949	-	88	42.132	ENSTRUG00000023723	trpt1	84	42.132	Takifugu_rubripes
ENSCSAVG00000003949	-	88	43.655	ENSTNIG00000003381	trpt1	90	42.523	Tetraodon_nigroviridis
ENSCSAVG00000003949	-	96	39.252	ENSTBEG00000006023	TRPT1	83	39.252	Tupaia_belangeri
ENSCSAVG00000003949	-	96	38.785	ENSTTRG00000010252	TRPT1	83	38.785	Tursiops_truncatus
ENSCSAVG00000003949	-	96	39.720	ENSUAMG00000015208	TRPT1	83	39.720	Ursus_americanus
ENSCSAVG00000003949	-	96	39.720	ENSUMAG00000001410	TRPT1	83	39.720	Ursus_maritimus
ENSCSAVG00000003949	-	98	40.271	ENSVVUG00000029774	TRPT1	89	40.271	Vulpes_vulpes
ENSCSAVG00000003949	-	89	44.000	ENSXETG00000007196	trpt1	85	44.000	Xenopus_tropicalis
ENSCSAVG00000003949	-	88	42.132	ENSXCOG00000001614	trpt1	94	40.826	Xiphophorus_couchianus
ENSCSAVG00000003949	-	88	42.640	ENSXMAG00000003142	trpt1	93	41.014	Xiphophorus_maculatus