EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSCSAVG00000004040 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
-
Gene Type
protein_coding
Species
Ciona_savignyi
Status
putative
Strand
Minus strand
Length
37600 bases
Position
chrreftig_133:177085-214684
Accession
-
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSAVP00000006751DusPF01207.172.9e-0711
ENSCSAVP00000006750DusPF01207.173.4e-0711
ENSCSAVP00000006748DusPF01207.173.5e-0711
ENSCSAVP00000006749DusPF01207.173.5e-0711
ENSCSAVP00000006747DusPF01207.173.5e-0711
ENSCSAVP00000006746DusPF01207.173.5e-0711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSAVT00000006833-3114-ENSCSAVP000000067461037 (aa)-H2YN44
ENSCSAVT00000006837-3060-ENSCSAVP000000067501020 (aa)-H2YN48
ENSCSAVT00000006836-3096-ENSCSAVP000000067491032 (aa)-H2YN47
ENSCSAVT00000006835-3096-ENSCSAVP000000067481031 (aa)-H2YN46
ENSCSAVT00000006834-3108-ENSCSAVP000000067471035 (aa)-H2YN45
ENSCSAVT00000006839-522-ENSCSAVP00000006752174 (aa)-H2YN50
ENSCSAVT00000006838-2832-ENSCSAVP00000006751944 (aa)-H2YN49
Gene Model
Click here to download ENSCSAVG00000004040's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004040's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSAVG00000004040-10069.608ENSG00000188641DPYD9279.874Homo_sapiens
ENSCSAVG00000004040-10069.531ENSAPOG00000009496dpydb9969.531Acanthochromis_polyacanthus
ENSCSAVG00000004040-10068.395ENSAMEG00000016662DPYD9968.707Ailuropoda_melanoleuca
ENSCSAVG00000004040-10067.641ENSACIG00000001318dpydb9967.802Amphilophus_citrinellus
ENSCSAVG00000004040-10069.133ENSAOCG00000015840dpydb9969.201Amphiprion_ocellaris
ENSCSAVG00000004040-10069.036ENSAPEG00000010459dpydb9969.103Amphiprion_percula
ENSCSAVG00000004040-10068.999ENSATEG00000002731dpydb9969.029Anabas_testudineus
ENSCSAVG00000004040-8572.388ENSAPLG00000012045DPYD10072.512Anas_platyrhynchos
ENSCSAVG00000004040-10071.331ENSACAG00000005513DPYD9971.498Anolis_carolinensis
ENSCSAVG00000004040-10069.306ENSANAG00000036723DPYD9969.450Aotus_nancymaae
ENSCSAVG00000004040-9868.343ENSACLG00000001822dpydb9968.478Astatotilapia_calliptera
ENSCSAVG00000004040-10070.980ENSAMXG00000000135dpyda.39970.980Astyanax_mexicanus
ENSCSAVG00000004040-10069.118ENSBTAG00000031358DPYD9969.552Bos_taurus
ENSCSAVG00000004040-10069.110ENSCJAG00000018179DPYD9969.320Callithrix_jacchus
ENSCSAVG00000004040-9868.907ENSCAFG00000020062DPYD9769.154Canis_familiaris
ENSCSAVG00000004040-10068.725ENSCAFG00020011809DPYD9969.141Canis_lupus_dingo
ENSCSAVG00000004040-10069.765ENSCHIG00000016223DPYD9970.081Capra_hircus
ENSCSAVG00000004040-8271.318ENSTSYG00000003615DPYD9371.576Carlito_syrichta
ENSCSAVG00000004040-10069.043ENSCPOG00000003769DPYD9969.089Cavia_porcellus
ENSCSAVG00000004040-9569.388ENSCCAG00000003997DPYD9769.388Cebus_capucinus
ENSCSAVG00000004040-10069.608ENSCATG00000033708DPYD9969.718Cercocebus_atys
ENSCSAVG00000004040-9969.163ENSCLAG00000009825DPYD9969.216Chinchilla_lanigera
ENSCSAVG00000004040-10069.706ENSCSAG00000001495DPYD9969.815Chlorocebus_sabaeus
ENSCSAVG00000004040-5472.014ENSCPBG00000011421-8869.966Chrysemys_picta_bellii
ENSCSAVG00000004040-10085.421ENSCING00000003770-10085.214Ciona_intestinalis
ENSCSAVG00000004040-10069.902ENSCANG00000042296DPYD9970.010Colobus_angolensis_palliatus
ENSCSAVG00000004040-10069.148ENSCSEG00000017980dpydb9969.374Cynoglossus_semilaevis
ENSCSAVG00000004040-10069.931ENSCVAG00000017559dpydb9970.196Cyprinodon_variegatus
ENSCSAVG00000004040-10070.029ENSDARG00000010267dpydb9970.452Danio_rerio
ENSCSAVG00000004040-6968.324ENSDARG00000086853dpyda.39968.324Danio_rerio
ENSCSAVG00000004040-6966.853ENSDNOG00000012556DPYD9966.948Dasypus_novemcinctus
ENSCSAVG00000004040-10068.915ENSDORG00000007418Dpyd9969.052Dipodomys_ordii
ENSCSAVG00000004040-10063.204FBgn0086450su(r)9863.337Drosophila_melanogaster
ENSCSAVG00000004040-10063.450ENSEBUG00000015615-9863.930Eptatretus_burgeri
ENSCSAVG00000004040-9969.450ENSEASG00005015723DPYD9869.617Equus_asinus_asinus
ENSCSAVG00000004040-10069.412ENSECAG00000010881DPYD9969.553Equus_caballus
ENSCSAVG00000004040-10069.501ENSELUG00000002581dpyda.39969.501Esox_lucius
ENSCSAVG00000004040-10068.627ENSFCAG00000039421DPYD9968.939Felis_catus
ENSCSAVG00000004040-9970.559ENSFALG00000002389DPYD9970.727Ficedula_albicollis
ENSCSAVG00000004040-9968.385ENSFDAG00000009322DPYD9968.385Fukomys_damarensis
ENSCSAVG00000004040-10070.294ENSFHEG00000001338dpydb9970.548Fundulus_heteroclitus
ENSCSAVG00000004040-9968.047ENSGMOG00000008152dpydb9968.515Gadus_morhua
ENSCSAVG00000004040-10070.196ENSGALG00000005509DPYD9970.644Gallus_gallus
ENSCSAVG00000004040-10070.020ENSGAFG00000006907dpydb9970.068Gambusia_affinis
ENSCSAVG00000004040-10068.922ENSGACG00000014875dpydb9968.982Gasterosteus_aculeatus
ENSCSAVG00000004040-9371.786ENSGAGG00000009437DPYD9971.918Gopherus_agassizii
ENSCSAVG00000004040-10068.848ENSHGLG00100009197DPYD9969.089Heterocephalus_glaber_male
ENSCSAVG00000004040-10069.404ENSHCOG00000015737dpydb9969.727Hippocampus_comes
ENSCSAVG00000004040-10070.490ENSIPUG00000009281dpyd9970.490Ictalurus_punctatus
ENSCSAVG00000004040-10062.854ENSSTOG00000008412DPYD9962.959Ictidomys_tridecemlineatus
ENSCSAVG00000004040-7366.223ENSJJAG00000023195Dpyd9766.223Jaculus_jaculus
ENSCSAVG00000004040-10069.344ENSKMAG00000009544dpydb9969.501Kryptolebias_marmoratus
ENSCSAVG00000004040-10069.073ENSLBEG00000021005dpydb9969.231Labrus_bergylta
ENSCSAVG00000004040-10070.617ENSLOCG00000008253dpydb9970.617Lepisosteus_oculatus
ENSCSAVG00000004040-10069.531ENSLAFG00000001798DPYD9969.709Loxodonta_africana
ENSCSAVG00000004040-10069.804ENSMFAG00000033409DPYD9969.912Macaca_fascicularis
ENSCSAVG00000004040-10069.804ENSMMUG00000020726DPYD9969.912Macaca_mulatta
ENSCSAVG00000004040-10069.706ENSMNEG00000028972DPYD9969.815Macaca_nemestrina
ENSCSAVG00000004040-10069.608ENSMLEG00000031938DPYD9969.718Mandrillus_leucophaeus
ENSCSAVG00000004040-9968.215ENSMAMG00000011621dpydb9968.373Mastacembelus_armatus
ENSCSAVG00000004040-10069.493ENSMZEG00005010698dpydb9969.650Maylandia_zebra
ENSCSAVG00000004040-8469.116ENSMGAG00000007264DPYD10069.116Meleagris_gallopavo
ENSCSAVG00000004040-10069.306ENSMICG00000003295DPYD9969.646Microcebus_murinus
ENSCSAVG00000004040-10069.569ENSMOCG00000019630Dpyd9969.612Microtus_ochrogaster
ENSCSAVG00000004040-10069.314ENSMODG00000004065DPYD9969.544Monodelphis_domestica
ENSCSAVG00000004040-10067.410ENSMALG00000004541dpydb9967.473Monopterus_albus
ENSCSAVG00000004040-10068.689MGP_CAROLIEiJ_G0025580Dpyd9968.932Mus_caroli
ENSCSAVG00000004040-10068.982ENSMUSG00000033308Dpyd9969.223Mus_musculus
ENSCSAVG00000004040-10068.780MGP_PahariEiJ_G0027026Dpyd9969.029Mus_pahari
ENSCSAVG00000004040-10069.178MGP_SPRETEiJ_G0026531Dpyd9969.417Mus_spretus
ENSCSAVG00000004040-10068.591ENSMPUG00000003278DPYD9969.006Mustela_putorius_furo
ENSCSAVG00000004040-6366.206ENSMLUG00000006629-9966.206Myotis_lucifugus
ENSCSAVG00000004040-10069.314ENSNGAG00000010583Dpyd9969.314Nannospalax_galili
ENSCSAVG00000004040-6960.653ENSNBRG00000001729dpydb9960.709Neolamprologus_brichardi
ENSCSAVG00000004040-10069.608ENSNLEG00000011315DPYD9969.718Nomascus_leucogenys
ENSCSAVG00000004040-6375.789ENSOPRG00000000478-6575.789Ochotona_princeps
ENSCSAVG00000004040-10069.736ENSODEG00000006033DPYD9969.806Octodon_degus
ENSCSAVG00000004040-10069.201ENSONIG00000016599dpydb9971.481Oreochromis_niloticus
ENSCSAVG00000004040-10069.902ENSOCUG00000008610DPYD9970.010Oryctolagus_cuniculus
ENSCSAVG00000004040-10069.736ENSORLG00000013626dpydb9969.863Oryzias_latipes
ENSCSAVG00000004040-10069.736ENSORLG00020019867dpydb9969.863Oryzias_latipes_hni
ENSCSAVG00000004040-10069.736ENSORLG00015020667dpydb9969.863Oryzias_latipes_hsok
ENSCSAVG00000004040-10069.246ENSOMEG00000017058dpydb9969.472Oryzias_melastigma
ENSCSAVG00000004040-10069.238ENSOGAG00000000167DPYD9969.447Otolemur_garnettii
ENSCSAVG00000004040-10069.697ENSOARG00000017549DPYD9969.903Ovis_aries
ENSCSAVG00000004040-10069.608ENSPPAG00000041846DPYD9870.924Pan_paniscus
ENSCSAVG00000004040-10068.824ENSPPRG00000023415DPYD9969.133Panthera_pardus
ENSCSAVG00000004040-10069.608ENSPTRG00000000990DPYD9969.822Pan_troglodytes
ENSCSAVG00000004040-10069.412ENSPANG00000001230DPYD9969.523Papio_anubis
ENSCSAVG00000004040-10068.390ENSPKIG00000008228dpydb9968.390Paramormyrops_kingsleyae
ENSCSAVG00000004040-9370.032ENSPSIG00000007676DPYD9970.188Pelodiscus_sinensis
ENSCSAVG00000004040-10069.510ENSPEMG00000012380Dpyd9969.553Peromyscus_maniculatus_bairdii
ENSCSAVG00000004040-10069.922ENSPFOG00000005785dpydb9969.971Poecilia_formosa
ENSCSAVG00000004040-10069.922ENSPLAG00000023274dpydb9969.971Poecilia_latipinna
ENSCSAVG00000004040-10069.727ENSPMEG00000005703dpydb9969.776Poecilia_mexicana
ENSCSAVG00000004040-10069.238ENSPREG00000014688dpydb9969.358Poecilia_reticulata
ENSCSAVG00000004040-10069.118ENSPPYG00000001131DPYD9969.336Pongo_abelii
ENSCSAVG00000004040-8980.255ENSPCAG00000000987DPYD9080.255Procavia_capensis
ENSCSAVG00000004040-9267.263ENSPCOG00000003302DPYD9967.263Propithecus_coquereli
ENSCSAVG00000004040-10069.591ENSPNYG00000012672dpydb9969.747Pundamilia_nyererei
ENSCSAVG00000004040-10070.392ENSPNAG00000021996dpyda.39970.392Pygocentrus_nattereri
ENSCSAVG00000004040-9366.175ENSRNOG00000017105Dpyd9966.897Rattus_norvegicus
ENSCSAVG00000004040-9967.656ENSRBIG00000035171DPYD9967.882Rhinopithecus_bieti
ENSCSAVG00000004040-5070.751ENSRROG00000031813-9870.784Rhinopithecus_roxellana
ENSCSAVG00000004040-9368.665ENSSBOG00000020116DPYD9968.901Saimiri_boliviensis_boliviensis
ENSCSAVG00000004040-10069.216ENSSHAG00000016972DPYD9969.447Sarcophilus_harrisii
ENSCSAVG00000004040-9968.996ENSSFOG00015008674dpydb9968.996Scleropages_formosus
ENSCSAVG00000004040-10067.795ENSSMAG00000001180dpydb9967.795Scophthalmus_maximus
ENSCSAVG00000004040-10069.201ENSSDUG00000013875dpydb9969.201Seriola_dumerili
ENSCSAVG00000004040-9272.414ENSSARG00000010936DPYD9372.414Sorex_araneus
ENSCSAVG00000004040-9868.060ENSSPAG00000006467dpydb9968.127Stegastes_partitus
ENSCSAVG00000004040-10069.314ENSSSCG00000006878DPYD9969.629Sus_scrofa
ENSCSAVG00000004040-9070.044ENSTGUG00000005495DPYD9970.282Taeniopygia_guttata
ENSCSAVG00000004040-10067.581ENSTRUG00000003040dpydb9967.644Takifugu_rubripes
ENSCSAVG00000004040-10068.652ENSTNIG00000005550dpydb9968.671Tetraodon_nigroviridis
ENSCSAVG00000004040-9867.953ENSTTRG00000008953DPYD9965.280Tursiops_truncatus
ENSCSAVG00000004040-9368.704ENSUMAG00000008909DPYD9969.150Ursus_maritimus
ENSCSAVG00000004040-9868.806ENSVVUG00000021876DPYD9969.360Vulpes_vulpes
ENSCSAVG00000004040-9364.113ENSXETG00000008600DPYD9964.368Xenopus_tropicalis
ENSCSAVG00000004040-10069.148ENSXCOG00000008010dpydb9969.261Xiphophorus_couchianus
ENSCSAVG00000004040-10069.238ENSXMAG00000018645dpydb9969.358Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us