EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000004113 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 25956 bases
Position: chrreftig_88:122502-148457
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000006887	AARP2CN	PF08142.12	7.3e-29	1	1
ENSCSAVP00000006888	AARP2CN	PF08142.12	1.3e-28	1	1
ENSCSAVP00000006890	AARP2CN	PF08142.12	1.8e-28	1	1
ENSCSAVP00000006889	AARP2CN	PF08142.12	2.4e-28	1	1
ENSCSAVP00000006885	AARP2CN	PF08142.12	2.6e-28	1	1
ENSCSAVP00000006891	AARP2CN	PF08142.12	3.3e-28	1	1
ENSCSAVP00000006886	AARP2CN	PF08142.12	3.7e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000006976	-	3269	-	ENSCSAVP00000006889	1059 (aa)	-	H2YNI2
ENSCSAVT00000006977	-	2916	-	ENSCSAVP00000006890	887 (aa)	-	H2YNI3
ENSCSAVT00000006974	-	2947	-	ENSCSAVP00000006887	977 (aa)	-	H2YNI0
ENSCSAVT00000006975	-	3181	-	ENSCSAVP00000006888	929 (aa)	-	H2YNI1
ENSCSAVT00000006972	-	3292	-	ENSCSAVP00000006885	1082 (aa)	-	H2YNH8
ENSCSAVT00000006973	-	3004	-	ENSCSAVP00000006886	995 (aa)	-	H2YNH9
ENSCSAVT00000006978	-	2765	-	ENSCSAVP00000006891	915 (aa)	-	H2YNI4

Gene Model

Click here to download ENSCSAVG00000004113's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004113's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000004113	-	82	60.831	ENSG00000165733	BMS1	67	55.529	Homo_sapiens
ENSCSAVG00000004113	-	82	54.023	ENSAPOG00000002296	bms1	53	73.377	Acanthochromis_polyacanthus
ENSCSAVG00000004113	-	88	55.374	ENSAMEG00000016834	BMS1	68	55.904	Ailuropoda_melanoleuca
ENSCSAVG00000004113	-	84	58.671	ENSACIG00000002588	bms1	75	52.273	Amphilophus_citrinellus
ENSCSAVG00000004113	-	89	53.333	ENSAOCG00000018088	bms1	72	53.647	Amphiprion_ocellaris
ENSCSAVG00000004113	-	89	53.333	ENSAPEG00000014673	bms1	75	50.529	Amphiprion_percula
ENSCSAVG00000004113	-	89	54.943	ENSATEG00000023465	bms1	71	55.059	Anabas_testudineus
ENSCSAVG00000004113	-	83	62.108	ENSAPLG00000003759	BMS1	63	61.111	Anas_platyrhynchos
ENSCSAVG00000004113	-	83	63.112	ENSACAG00000004537	-	67	56.468	Anolis_carolinensis
ENSCSAVG00000004113	-	83	59.238	ENSANAG00000023432	BMS1	68	53.494	Aotus_nancymaae
ENSCSAVG00000004113	-	88	53.103	ENSACLG00000001294	bms1	55	71.255	Astatotilapia_calliptera
ENSCSAVG00000004113	-	88	51.872	ENSAMXG00000011236	bms1	72	52.632	Astyanax_mexicanus
ENSCSAVG00000004113	-	84	60.057	ENSBTAG00000012878	BMS1	67	56.145	Bos_taurus
ENSCSAVG00000004113	-	73	63.478	WBGene00022021	Y61A9LA.10	88	41.070	Caenorhabditis_elegans
ENSCSAVG00000004113	-	88	54.779	ENSCJAG00000021705	BMS1	67	55.288	Callithrix_jacchus
ENSCSAVG00000004113	-	91	55.478	ENSCAFG00000007114	BMS1	69	56.250	Canis_familiaris
ENSCSAVG00000004113	-	91	55.478	ENSCAFG00020025282	BMS1	69	56.250	Canis_lupus_dingo
ENSCSAVG00000004113	-	88	56.075	ENSCHIG00000023251	BMS1	67	56.627	Capra_hircus
ENSCSAVG00000004113	-	92	48.131	ENSCAPG00000008652	BMS1	78	44.720	Cavia_aperea
ENSCSAVG00000004113	-	88	59.375	ENSCPOG00000000502	BMS1	78	51.139	Cavia_porcellus
ENSCSAVG00000004113	-	85	44.522	ENSCCAG00000024969	-	62	44.000	Cebus_capucinus
ENSCSAVG00000004113	-	73	47.419	ENSCATG00000008695	-	57	47.419	Cercocebus_atys
ENSCSAVG00000004113	-	82	61.128	ENSCATG00000030625	-	64	62.295	Cercocebus_atys
ENSCSAVG00000004113	-	93	54.907	ENSCLAG00000002446	BMS1	68	54.893	Chinchilla_lanigera
ENSCSAVG00000004113	-	82	61.128	ENSCSAG00000011118	BMS1	64	54.824	Chlorocebus_sabaeus
ENSCSAVG00000004113	-	84	57.955	ENSCHOG00000011055	BMS1	67	54.415	Choloepus_hoffmanni
ENSCSAVG00000004113	-	92	56.075	ENSCPBG00000025581	BMS1	67	56.220	Chrysemys_picta_bellii
ENSCSAVG00000004113	-	91	75.966	ENSCING00000003181	-	78	82.381	Ciona_intestinalis
ENSCSAVG00000004113	-	82	61.128	ENSCANG00000011609	BMS1	64	54.824	Colobus_angolensis_palliatus
ENSCSAVG00000004113	-	88	53.505	ENSCGRG00001019461	Bms1	68	53.735	Cricetulus_griseus_chok1gshd
ENSCSAVG00000004113	-	88	53.505	ENSCGRG00000009016	Bms1	68	53.735	Cricetulus_griseus_crigri
ENSCSAVG00000004113	-	93	50.826	ENSCSEG00000002469	bms1	72	53.864	Cynoglossus_semilaevis
ENSCSAVG00000004113	-	92	51.828	ENSCVAG00000008371	bms1	55	70.850	Cyprinodon_variegatus
ENSCSAVG00000004113	-	86	56.032	ENSDARG00000054154	bms1	82	48.871	Danio_rerio
ENSCSAVG00000004113	-	88	55.140	ENSDNOG00000015761	BMS1	63	55.583	Dasypus_novemcinctus
ENSCSAVG00000004113	-	84	58.405	ENSDORG00000002982	Bms1	67	53.938	Dipodomys_ordii
ENSCSAVG00000004113	-	74	65.217	FBgn0036686	CG7728	80	44.615	Drosophila_melanogaster
ENSCSAVG00000004113	-	71	63.077	ENSETEG00000009554	BMS1	53	64.286	Echinops_telfairi
ENSCSAVG00000004113	-	84	59.770	ENSEASG00005006894	BMS1	67	55.181	Equus_asinus_asinus
ENSCSAVG00000004113	-	88	59.770	ENSECAG00000001358	BMS1	67	55.181	Equus_caballus
ENSCSAVG00000004113	-	87	52.448	ENSELUG00000001756	bms1	67	61.491	Esox_lucius
ENSCSAVG00000004113	-	89	55.245	ENSFCAG00000011220	BMS1	67	55.769	Felis_catus
ENSCSAVG00000004113	-	88	57.870	ENSFALG00000006882	BMS1	67	58.057	Ficedula_albicollis
ENSCSAVG00000004113	-	98	54.673	ENSFDAG00000001422	BMS1	68	55.181	Fukomys_damarensis
ENSCSAVG00000004113	-	93	54.253	ENSFHEG00000003367	bms1	74	54.588	Fundulus_heteroclitus
ENSCSAVG00000004113	-	83	58.726	ENSGMOG00000000718	bms1	75	53.071	Gadus_morhua
ENSCSAVG00000004113	-	82	62.353	ENSGALG00000002624	BMS1	50	70.445	Gallus_gallus
ENSCSAVG00000004113	-	89	53.653	ENSGACG00000015334	bms1	75	52.804	Gasterosteus_aculeatus
ENSCSAVG00000004113	-	88	56.019	ENSGAGG00000003467	BMS1	71	56.161	Gopherus_agassizii
ENSCSAVG00000004113	-	88	53.103	ENSHBUG00000022628	bms1	55	71.255	Haplochromis_burtoni
ENSCSAVG00000004113	-	96	54.167	ENSHGLG00000000477	BMS1	68	54.654	Heterocephalus_glaber_female
ENSCSAVG00000004113	-	92	54.439	ENSHGLG00100002176	BMS1	68	54.654	Heterocephalus_glaber_male
ENSCSAVG00000004113	-	92	52.523	ENSHCOG00000017604	bms1	74	53.052	Hippocampus_comes
ENSCSAVG00000004113	-	88	53.704	ENSIPUG00000017855	bms1	71	54.353	Ictalurus_punctatus
ENSCSAVG00000004113	-	84	59.040	ENSSTOG00000015063	BMS1	64	54.863	Ictidomys_tridecemlineatus
ENSCSAVG00000004113	-	82	60.237	ENSJJAG00000017328	Bms1	68	53.976	Jaculus_jaculus
ENSCSAVG00000004113	-	88	55.275	ENSLBEG00000028208	bms1	73	53.968	Labrus_bergylta
ENSCSAVG00000004113	-	88	49.885	ENSLACG00000001600	BMS1	71	49.057	Latimeria_chalumnae
ENSCSAVG00000004113	-	72	70.000	ENSLOCG00000012914	bms1	72	53.882	Lepisosteus_oculatus
ENSCSAVG00000004113	-	92	54.779	ENSLAFG00000006250	BMS1	67	55.288	Loxodonta_africana
ENSCSAVG00000004113	-	76	62.030	ENSMFAG00000037771	BMS1	80	50.238	Macaca_fascicularis
ENSCSAVG00000004113	-	78	57.426	ENSMMUG00000007426	-	63	56.958	Macaca_mulatta
ENSCSAVG00000004113	-	66	48.387	ENSMLEG00000029084	-	70	47.082	Mandrillus_leucophaeus
ENSCSAVG00000004113	-	87	54.023	ENSMAMG00000020855	bms1	70	54.353	Mastacembelus_armatus
ENSCSAVG00000004113	-	88	53.103	ENSMZEG00005005663	bms1	55	71.255	Maylandia_zebra
ENSCSAVG00000004113	-	88	56.481	ENSMGAG00000001170	BMS1	67	56.635	Meleagris_gallopavo
ENSCSAVG00000004113	-	82	59.701	ENSMAUG00000002195	Bms1	68	53.735	Mesocricetus_auratus
ENSCSAVG00000004113	-	88	53.380	ENSMICG00000009977	BMS1	67	54.087	Microcebus_murinus
ENSCSAVG00000004113	-	88	54.439	ENSMOCG00000002038	Bms1	68	54.831	Microtus_ochrogaster
ENSCSAVG00000004113	-	81	72.174	ENSMMOG00000000977	bms1	55	72.174	Mola_mola
ENSCSAVG00000004113	-	84	58.757	ENSMODG00000001177	BMS1	66	55.181	Monodelphis_domestica
ENSCSAVG00000004113	-	88	53.333	ENSMALG00000009680	bms1	72	53.647	Monopterus_albus
ENSCSAVG00000004113	-	72	64.344	MGP_CAROLIEiJ_G0028785	-	62	64.730	Mus_caroli
ENSCSAVG00000004113	-	88	53.738	ENSMUSG00000030138	Bms1	68	53.976	Mus_musculus
ENSCSAVG00000004113	-	88	53.738	MGP_PahariEiJ_G0022539	Bms1	69	53.976	Mus_pahari
ENSCSAVG00000004113	-	88	53.738	MGP_SPRETEiJ_G0029816	Bms1	68	53.976	Mus_spretus
ENSCSAVG00000004113	-	92	54.673	ENSMPUG00000017276	BMS1	64	54.481	Mustela_putorius_furo
ENSCSAVG00000004113	-	86	60.534	ENSMLUG00000003260	BMS1	68	54.699	Myotis_lucifugus
ENSCSAVG00000004113	-	86	60.000	ENSNGAG00000015258	Bms1	66	53.066	Nannospalax_galili
ENSCSAVG00000004113	-	82	60.597	ENSNLEG00000015791	BMS1	64	61.111	Nomascus_leucogenys
ENSCSAVG00000004113	-	85	54.398	ENSOPRG00000005195	BMS1	64	54.893	Ochotona_princeps
ENSCSAVG00000004113	-	84	60.896	ENSODEG00000005554	BMS1	68	55.181	Octodon_degus
ENSCSAVG00000004113	-	92	50.933	ENSONIG00000007227	bms1	83	53.412	Oreochromis_niloticus
ENSCSAVG00000004113	-	84	59.659	ENSOANG00000000662	-	64	55.847	Ornithorhynchus_anatinus
ENSCSAVG00000004113	-	92	55.607	ENSOCUG00000005354	BMS1	67	55.904	Oryctolagus_cuniculus
ENSCSAVG00000004113	-	88	54.023	ENSORLG00000014655	bms1	73	54.118	Oryzias_latipes
ENSCSAVG00000004113	-	89	54.023	ENSORLG00020016246	bms1	73	54.118	Oryzias_latipes_hni
ENSCSAVG00000004113	-	87	54.023	ENSORLG00015014183	bms1	79	49.491	Oryzias_latipes_hsok
ENSCSAVG00000004113	-	87	54.023	ENSOMEG00000015042	bms1	73	54.118	Oryzias_melastigma
ENSCSAVG00000004113	-	82	61.721	ENSOGAG00000006511	BMS1	67	55.663	Otolemur_garnettii
ENSCSAVG00000004113	-	88	56.075	ENSOARG00000003900	BMS1	67	56.627	Ovis_aries
ENSCSAVG00000004113	-	75	61.654	ENSPPAG00000027837	BMS1	63	53.218	Pan_paniscus
ENSCSAVG00000004113	-	83	61.128	ENSPPRG00000001311	BMS1	67	55.769	Panthera_pardus
ENSCSAVG00000004113	-	85	57.653	ENSPTIG00000009652	BMS1	65	59.249	Panthera_tigris_altaica
ENSCSAVG00000004113	-	82	61.128	ENSPTRG00000002441	BMS1	67	55.769	Pan_troglodytes
ENSCSAVG00000004113	-	84	57.821	ENSPKIG00000008165	bms1	68	53.182	Paramormyrops_kingsleyae
ENSCSAVG00000004113	-	88	55.841	ENSPSIG00000006481	BMS1	68	55.981	Pelodiscus_sinensis
ENSCSAVG00000004113	-	75	61.278	ENSPEMG00000022467	Bms1	63	53.465	Peromyscus_maniculatus_bairdii
ENSCSAVG00000004113	-	82	63.636	ENSPCIG00000001339	BMS1	59	63.636	Phascolarctos_cinereus
ENSCSAVG00000004113	-	72	70.000	ENSPFOG00000015180	bms1	79	53.630	Poecilia_formosa
ENSCSAVG00000004113	-	88	54.483	ENSPMEG00000023176	bms1	67	70.040	Poecilia_mexicana
ENSCSAVG00000004113	-	88	54.023	ENSPREG00000002695	bms1	80	53.256	Poecilia_reticulata
ENSCSAVG00000004113	-	82	59.941	ENSPCOG00000023834	-	68	54.808	Propithecus_coquereli
ENSCSAVG00000004113	-	89	58.263	ENSPVAG00000000725	BMS1	64	54.854	Pteropus_vampyrus
ENSCSAVG00000004113	-	94	50.000	ENSPNYG00000018866	bms1	54	71.255	Pundamilia_nyererei
ENSCSAVG00000004113	-	87	54.824	ENSPNAG00000000676	bms1	68	54.824	Pygocentrus_nattereri
ENSCSAVG00000004113	-	66	63.874	ENSRNOG00000006576	Bms1	64	63.874	Rattus_norvegicus
ENSCSAVG00000004113	-	82	61.424	ENSRROG00000040101	BMS1	64	62.623	Rhinopithecus_roxellana
ENSCSAVG00000004113	-	75	58.333	YPL217C	-	61	54.483	Saccharomyces_cerevisiae
ENSCSAVG00000004113	-	88	55.012	ENSSBOG00000035778	BMS1	67	55.529	Saimiri_boliviensis_boliviensis
ENSCSAVG00000004113	-	89	54.206	ENSSHAG00000005062	BMS1	50	68.421	Sarcophilus_harrisii
ENSCSAVG00000004113	-	92	52.523	ENSSFOG00015022313	bms1	53	70.445	Scleropages_formosus
ENSCSAVG00000004113	-	89	52.874	ENSSMAG00000019966	bms1	72	53.176	Scophthalmus_maximus
ENSCSAVG00000004113	-	72	70.870	ENSSDUG00000016875	bms1	71	54.588	Seriola_dumerili
ENSCSAVG00000004113	-	72	71.304	ENSSLDG00000015199	bms1	71	54.353	Seriola_lalandi_dorsalis
ENSCSAVG00000004113	-	87	56.542	ENSSPUG00000014454	BMS1	67	56.699	Sphenodon_punctatus
ENSCSAVG00000004113	-	88	55.374	ENSSSCG00000010198	BMS1	67	57.407	Sus_scrofa
ENSCSAVG00000004113	-	88	58.102	ENSTGUG00000006302	-	63	57.783	Taeniopygia_guttata
ENSCSAVG00000004113	-	88	53.009	ENSTRUG00000008028	bms1	56	68.826	Takifugu_rubripes
ENSCSAVG00000004113	-	82	57.225	ENSTNIG00000006216	bms1	53	67.857	Tetraodon_nigroviridis
ENSCSAVG00000004113	-	65	64.286	ENSTBEG00000001673	-	50	64.286	Tupaia_belangeri
ENSCSAVG00000004113	-	83	60.345	ENSTTRG00000007983	BMS1	64	55.582	Tursiops_truncatus
ENSCSAVG00000004113	-	88	55.374	ENSUAMG00000023996	BMS1	67	55.904	Ursus_americanus
ENSCSAVG00000004113	-	88	55.374	ENSUMAG00000016523	BMS1	67	55.904	Ursus_maritimus
ENSCSAVG00000004113	-	72	60.997	ENSVPAG00000007477	BMS1	63	55.556	Vicugna_pacos
ENSCSAVG00000004113	-	91	55.711	ENSVVUG00000021305	BMS1	70	56.490	Vulpes_vulpes
ENSCSAVG00000004113	-	85	60.632	ENSXETG00000008158	bms1	82	46.356	Xenopus_tropicalis
ENSCSAVG00000004113	-	88	54.023	ENSXCOG00000000506	bms1	98	54.567	Xiphophorus_couchianus
ENSCSAVG00000004113	-	87	54.023	ENSXMAG00000014236	bms1	80	53.647	Xiphophorus_maculatus