EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000004158 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 15319 bases
Position: chrreftig_215:400392-415710
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000006947	DEAD	PF00270.29	4.6e-39	1	1
ENSCSAVP00000006946	DEAD	PF00270.29	7.6e-39	1	1
ENSCSAVP00000006945	DEAD	PF00270.29	8.1e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000007035	-	2159	-	ENSCSAVP00000006945	672 (aa)	-	H2YNN8
ENSCSAVT00000007036	-	2077	-	ENSCSAVP00000006946	649 (aa)	-	H2YNN9
ENSCSAVT00000007037	-	1464	-	ENSCSAVP00000006947	488 (aa)	-	H2YNP0

Gene Model

Click here to download ENSCSAVG00000004158's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004158's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000004158	-	67	30.395	ENSCSAVG00000000630	-	80	30.395
ENSCSAVG00000004158	-	67	30.055	ENSCSAVG00000004227	-	65	30.055
ENSCSAVG00000004158	-	60	33.444	ENSCSAVG00000004191	-	55	33.444
ENSCSAVG00000004158	-	69	33.333	ENSCSAVG00000006949	-	67	33.333
ENSCSAVG00000004158	-	71	30.114	ENSCSAVG00000004895	-	60	30.114
ENSCSAVG00000004158	-	62	32.154	ENSCSAVG00000003835	-	71	32.154
ENSCSAVG00000004158	-	70	39.181	ENSCSAVG00000002180	-	82	39.181
ENSCSAVG00000004158	-	69	33.333	ENSCSAVG00000011566	-	68	33.333
ENSCSAVG00000004158	-	86	35.698	ENSCSAVG00000002353	-	73	39.550
ENSCSAVG00000004158	-	70	37.318	ENSCSAVG00000004304	-	50	37.318
ENSCSAVG00000004158	-	61	31.104	ENSCSAVG00000003045	-	81	30.293
ENSCSAVG00000004158	-	68	30.149	ENSCSAVG00000003023	-	54	30.149
ENSCSAVG00000004158	-	65	34.568	ENSCSAVG00000000522	-	71	34.568

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000004158	-	100	67.350	ENSG00000174243	DDX23	83	67.350	Homo_sapiens
ENSCSAVG00000004158	-	100	67.449	ENSAPOG00000003760	ddx23	84	67.493	Acanthochromis_polyacanthus
ENSCSAVG00000004158	-	100	67.350	ENSAMEG00000007123	DDX23	83	67.350	Ailuropoda_melanoleuca
ENSCSAVG00000004158	-	100	65.926	ENSACIG00000000022	ddx23	88	66.667	Amphilophus_citrinellus
ENSCSAVG00000004158	-	100	67.449	ENSAOCG00000017348	ddx23	84	67.493	Amphiprion_ocellaris
ENSCSAVG00000004158	-	100	67.449	ENSAPEG00000016857	ddx23	85	67.493	Amphiprion_percula
ENSCSAVG00000004158	-	100	66.570	ENSATEG00000016800	ddx23	88	66.012	Anabas_testudineus
ENSCSAVG00000004158	-	100	61.257	ENSAPLG00000002868	DDX23	83	61.696	Anas_platyrhynchos
ENSCSAVG00000004158	-	100	67.350	ENSACAG00000025589	DDX23	80	67.350	Anolis_carolinensis
ENSCSAVG00000004158	-	100	67.496	ENSANAG00000018663	DDX23	83	67.496	Aotus_nancymaae
ENSCSAVG00000004158	-	100	66.276	ENSAMXG00000017597	ddx23	84	66.032	Astyanax_mexicanus
ENSCSAVG00000004158	-	100	67.350	ENSBTAG00000021810	DDX23	83	67.350	Bos_taurus
ENSCSAVG00000004158	-	96	61.938	WBGene00017162	ddx-23	99	54.821	Caenorhabditis_elegans
ENSCSAVG00000004158	-	100	67.496	ENSCJAG00000020775	DDX23	83	67.496	Callithrix_jacchus
ENSCSAVG00000004158	-	100	67.350	ENSCAFG00000025422	DDX23	83	67.350	Canis_familiaris
ENSCSAVG00000004158	-	100	67.350	ENSCAFG00020013383	DDX23	83	67.350	Canis_lupus_dingo
ENSCSAVG00000004158	-	100	67.350	ENSCHIG00000018783	DDX23	83	67.350	Capra_hircus
ENSCSAVG00000004158	-	100	67.057	ENSTSYG00000005429	DDX23	83	67.057	Carlito_syrichta
ENSCSAVG00000004158	-	100	67.496	ENSCPOG00000003278	DDX23	83	67.496	Cavia_porcellus
ENSCSAVG00000004158	-	87	80.000	ENSCCAG00000029177	DDX23	80	80.000	Cebus_capucinus
ENSCSAVG00000004158	-	100	61.832	ENSCATG00000032335	-	85	59.329	Cercocebus_atys
ENSCSAVG00000004158	-	100	67.350	ENSCATG00000039797	DDX23	83	67.350	Cercocebus_atys
ENSCSAVG00000004158	-	100	67.496	ENSCLAG00000002986	DDX23	83	67.496	Chinchilla_lanigera
ENSCSAVG00000004158	-	100	67.350	ENSCSAG00000006240	DDX23	83	67.350	Chlorocebus_sabaeus
ENSCSAVG00000004158	-	80	64.610	ENSCHOG00000009027	DDX23	80	64.610	Choloepus_hoffmanni
ENSCSAVG00000004158	-	100	67.350	ENSCPBG00000019988	DDX23	84	67.350	Chrysemys_picta_bellii
ENSCSAVG00000004158	-	100	83.529	ENSCING00000001913	-	89	83.529	Ciona_intestinalis
ENSCSAVG00000004158	-	100	67.350	ENSCANG00000040182	DDX23	95	67.350	Colobus_angolensis_palliatus
ENSCSAVG00000004158	-	100	60.417	ENSCANG00000042510	-	86	60.245	Colobus_angolensis_palliatus
ENSCSAVG00000004158	-	100	67.496	ENSCGRG00001015090	Ddx23	83	67.496	Cricetulus_griseus_chok1gshd
ENSCSAVG00000004158	-	100	67.496	ENSCGRG00000016314	Ddx23	83	67.496	Cricetulus_griseus_crigri
ENSCSAVG00000004158	-	100	66.716	ENSCSEG00000020970	ddx23	84	67.009	Cynoglossus_semilaevis
ENSCSAVG00000004158	-	95	71.915	ENSCVAG00000015745	ddx23	85	66.569	Cyprinodon_variegatus
ENSCSAVG00000004158	-	100	66.716	ENSDARG00000021945	ddx23	84	67.009	Danio_rerio
ENSCSAVG00000004158	-	100	67.496	ENSDNOG00000043176	DDX23	83	67.496	Dasypus_novemcinctus
ENSCSAVG00000004158	-	100	67.350	ENSDORG00000012659	Ddx23	83	67.350	Dipodomys_ordii
ENSCSAVG00000004158	-	100	63.822	FBgn0032690	CG10333	85	62.123	Drosophila_melanogaster
ENSCSAVG00000004158	-	100	67.353	ENSETEG00000015816	DDX23	84	67.158	Echinops_telfairi
ENSCSAVG00000004158	-	100	66.667	ENSEBUG00000003319	ddx23	93	69.327	Eptatretus_burgeri
ENSCSAVG00000004158	-	100	67.350	ENSEASG00005000455	DDX23	83	67.350	Equus_asinus_asinus
ENSCSAVG00000004158	-	100	67.350	ENSECAG00000016681	DDX23	83	67.350	Equus_caballus
ENSCSAVG00000004158	-	100	60.908	ENSEEUG00000009658	DDX23	83	60.908	Erinaceus_europaeus
ENSCSAVG00000004158	-	100	66.862	ENSELUG00000015358	ddx23	88	66.618	Esox_lucius
ENSCSAVG00000004158	-	100	67.350	ENSFCAG00000000082	DDX23	83	67.350	Felis_catus
ENSCSAVG00000004158	-	100	67.155	ENSFALG00000000133	DDX23	83	67.155	Ficedula_albicollis
ENSCSAVG00000004158	-	100	67.496	ENSFDAG00000017059	DDX23	83	67.496	Fukomys_damarensis
ENSCSAVG00000004158	-	100	66.716	ENSFHEG00000017499	ddx23	90	66.314	Fundulus_heteroclitus
ENSCSAVG00000004158	-	100	66.569	ENSGMOG00000009592	ddx23	86	66.569	Gadus_morhua
ENSCSAVG00000004158	-	100	67.595	ENSGALG00000032307	DDX23	83	67.595	Gallus_gallus
ENSCSAVG00000004158	-	100	66.862	ENSGAFG00000012366	ddx23	84	66.716	Gambusia_affinis
ENSCSAVG00000004158	-	100	66.276	ENSGACG00000003024	ddx23	96	71.478	Gasterosteus_aculeatus
ENSCSAVG00000004158	-	100	67.350	ENSGAGG00000007790	DDX23	84	67.350	Gopherus_agassizii
ENSCSAVG00000004158	-	100	67.350	ENSGGOG00000015252	DDX23	100	81.579	Gorilla_gorilla
ENSCSAVG00000004158	-	60	71.478	ENSGGOG00000027979	-	100	72.277	Gorilla_gorilla
ENSCSAVG00000004158	-	100	66.716	ENSHBUG00000011876	ddx23	84	67.055	Haplochromis_burtoni
ENSCSAVG00000004158	-	100	67.496	ENSHGLG00000004292	DDX23	83	67.496	Heterocephalus_glaber_female
ENSCSAVG00000004158	-	100	67.496	ENSHGLG00100017585	DDX23	83	67.496	Heterocephalus_glaber_male
ENSCSAVG00000004158	-	100	66.716	ENSHCOG00000019338	ddx23	87	66.163	Hippocampus_comes
ENSCSAVG00000004158	-	100	67.155	ENSIPUG00000005247	DDX23	84	67.155	Ictalurus_punctatus
ENSCSAVG00000004158	-	100	67.496	ENSSTOG00000004219	DDX23	83	67.496	Ictidomys_tridecemlineatus
ENSCSAVG00000004158	-	100	67.350	ENSJJAG00000018994	Ddx23	83	67.350	Jaculus_jaculus
ENSCSAVG00000004158	-	100	67.009	ENSKMAG00000012060	ddx23	90	66.465	Kryptolebias_marmoratus
ENSCSAVG00000004158	-	100	66.276	ENSLBEG00000019475	ddx23	85	66.276	Labrus_bergylta
ENSCSAVG00000004158	-	100	67.350	ENSLACG00000016977	DDX23	91	67.936	Latimeria_chalumnae
ENSCSAVG00000004158	-	100	65.741	ENSLOCG00000007385	ddx23	83	66.569	Lepisosteus_oculatus
ENSCSAVG00000004158	-	100	67.350	ENSLAFG00000014227	DDX23	83	67.350	Loxodonta_africana
ENSCSAVG00000004158	-	100	67.350	ENSMFAG00000038666	DDX23	83	67.350	Macaca_fascicularis
ENSCSAVG00000004158	-	100	67.350	ENSMMUG00000008432	DDX23	100	81.579	Macaca_mulatta
ENSCSAVG00000004158	-	100	67.204	ENSMNEG00000040016	DDX23	83	67.204	Macaca_nemestrina
ENSCSAVG00000004158	-	100	61.069	ENSMNEG00000045260	-	84	58.641	Macaca_nemestrina
ENSCSAVG00000004158	-	100	61.069	ENSMLEG00000035096	-	87	58.430	Mandrillus_leucophaeus
ENSCSAVG00000004158	-	100	67.350	ENSMLEG00000042846	DDX23	83	67.350	Mandrillus_leucophaeus
ENSCSAVG00000004158	-	100	66.422	ENSMAMG00000024144	ddx23	85	66.314	Mastacembelus_armatus
ENSCSAVG00000004158	-	100	66.569	ENSMZEG00005026086	ddx23	85	66.366	Maylandia_zebra
ENSCSAVG00000004158	-	100	67.496	ENSMAUG00000012336	Ddx23	83	67.496	Mesocricetus_auratus
ENSCSAVG00000004158	-	100	67.350	ENSMICG00000017541	DDX23	83	67.350	Microcebus_murinus
ENSCSAVG00000004158	-	100	67.496	ENSMOCG00000018987	Ddx23	83	67.496	Microtus_ochrogaster
ENSCSAVG00000004158	-	100	64.498	ENSMMOG00000012406	ddx23	85	65.356	Mola_mola
ENSCSAVG00000004158	-	100	67.643	ENSMODG00000009975	DDX23	83	67.643	Monodelphis_domestica
ENSCSAVG00000004158	-	100	66.276	ENSMALG00000022366	ddx23	85	66.472	Monopterus_albus
ENSCSAVG00000004158	-	100	67.496	MGP_CAROLIEiJ_G0020240	Ddx23	83	67.496	Mus_caroli
ENSCSAVG00000004158	-	100	67.496	ENSMUSG00000003360	Ddx23	83	67.496	Mus_musculus
ENSCSAVG00000004158	-	100	67.496	MGP_PahariEiJ_G0020243	Ddx23	83	67.496	Mus_pahari
ENSCSAVG00000004158	-	100	67.496	MGP_SPRETEiJ_G0021137	Ddx23	83	67.496	Mus_spretus
ENSCSAVG00000004158	-	100	67.350	ENSMPUG00000014739	DDX23	83	67.350	Mustela_putorius_furo
ENSCSAVG00000004158	-	100	64.815	ENSMLUG00000003683	-	83	64.611	Myotis_lucifugus
ENSCSAVG00000004158	-	100	67.643	ENSMLUG00000011033	-	83	67.643	Myotis_lucifugus
ENSCSAVG00000004158	-	100	67.350	ENSNGAG00000019018	Ddx23	83	67.350	Nannospalax_galili
ENSCSAVG00000004158	-	100	66.716	ENSNBRG00000022928	ddx23	85	66.517	Neolamprologus_brichardi
ENSCSAVG00000004158	-	100	61.347	ENSNLEG00000017864	DDX23	82	61.347	Nomascus_leucogenys
ENSCSAVG00000004158	-	100	67.643	ENSMEUG00000009477	DDX23	83	67.643	Notamacropus_eugenii
ENSCSAVG00000004158	-	100	67.350	ENSOPRG00000007170	-	83	67.350	Ochotona_princeps
ENSCSAVG00000004158	-	100	67.496	ENSODEG00000003592	DDX23	83	67.496	Octodon_degus
ENSCSAVG00000004158	-	100	66.569	ENSONIG00000017048	ddx23	84	66.910	Oreochromis_niloticus
ENSCSAVG00000004158	-	100	67.350	ENSOCUG00000001414	DDX23	83	67.350	Oryctolagus_cuniculus
ENSCSAVG00000004158	-	100	66.276	ENSORLG00000012330	ddx23	85	66.276	Oryzias_latipes
ENSCSAVG00000004158	-	100	66.129	ENSORLG00020017586	ddx23	85	66.129	Oryzias_latipes_hni
ENSCSAVG00000004158	-	100	65.185	ENSORLG00015012361	ddx23	88	65.710	Oryzias_latipes_hsok
ENSCSAVG00000004158	-	100	66.763	ENSOMEG00000006453	ddx23	88	66.419	Oryzias_melastigma
ENSCSAVG00000004158	-	100	67.496	ENSOGAG00000016813	DDX23	83	67.496	Otolemur_garnettii
ENSCSAVG00000004158	-	100	67.350	ENSOARG00000019105	DDX23	75	67.350	Ovis_aries
ENSCSAVG00000004158	-	100	57.028	ENSPPAG00000038775	-	84	53.172	Pan_paniscus
ENSCSAVG00000004158	-	100	67.350	ENSPPAG00000037807	DDX23	100	81.579	Pan_paniscus
ENSCSAVG00000004158	-	100	67.350	ENSPPRG00000015345	DDX23	83	67.350	Panthera_pardus
ENSCSAVG00000004158	-	100	67.350	ENSPTIG00000018873	DDX23	83	67.350	Panthera_tigris_altaica
ENSCSAVG00000004158	-	100	67.350	ENSPTRG00000004887	DDX23	100	81.579	Pan_troglodytes
ENSCSAVG00000004158	-	100	59.839	ENSPTRG00000051972	-	83	55.136	Pan_troglodytes
ENSCSAVG00000004158	-	95	67.026	ENSPANG00000035074	-	84	65.805	Papio_anubis
ENSCSAVG00000004158	-	100	67.350	ENSPANG00000019459	DDX23	76	67.350	Papio_anubis
ENSCSAVG00000004158	-	100	67.155	ENSPKIG00000024110	ddx23	83	67.155	Paramormyrops_kingsleyae
ENSCSAVG00000004158	-	100	58.798	ENSPSIG00000002834	DDX23	85	58.798	Pelodiscus_sinensis
ENSCSAVG00000004158	-	100	66.111	ENSPMGG00000010243	ddx23	86	66.314	Periophthalmus_magnuspinnatus
ENSCSAVG00000004158	-	100	67.496	ENSPEMG00000011305	Ddx23	83	67.496	Peromyscus_maniculatus_bairdii
ENSCSAVG00000004158	-	100	67.155	ENSPMAG00000008625	ddx23	91	67.155	Petromyzon_marinus
ENSCSAVG00000004158	-	100	67.643	ENSPCIG00000027691	DDX23	83	67.643	Phascolarctos_cinereus
ENSCSAVG00000004158	-	100	67.449	ENSPFOG00000012159	ddx23	84	67.493	Poecilia_formosa
ENSCSAVG00000004158	-	100	67.302	ENSPLAG00000005052	ddx23	87	65.805	Poecilia_latipinna
ENSCSAVG00000004158	-	100	67.449	ENSPMEG00000015385	ddx23	85	67.493	Poecilia_mexicana
ENSCSAVG00000004158	-	100	67.302	ENSPREG00000007074	ddx23	84	67.347	Poecilia_reticulata
ENSCSAVG00000004158	-	100	67.350	ENSPPYG00000004468	DDX23	80	67.350	Pongo_abelii
ENSCSAVG00000004158	-	100	67.496	ENSPCAG00000002016	DDX23	83	67.496	Procavia_capensis
ENSCSAVG00000004158	-	100	67.350	ENSPCOG00000025915	DDX23	100	81.579	Propithecus_coquereli
ENSCSAVG00000004158	-	100	67.350	ENSPVAG00000009818	DDX23	83	67.350	Pteropus_vampyrus
ENSCSAVG00000004158	-	100	66.569	ENSPNYG00000021038	ddx23	86	66.163	Pundamilia_nyererei
ENSCSAVG00000004158	-	100	65.926	ENSPNAG00000019203	ddx23	89	66.567	Pygocentrus_nattereri
ENSCSAVG00000004158	-	100	67.496	ENSRNOG00000060154	Ddx23	83	67.496	Rattus_norvegicus
ENSCSAVG00000004158	-	100	60.752	ENSRBIG00000036337	-	87	60.752	Rhinopithecus_bieti
ENSCSAVG00000004158	-	81	78.906	ENSRBIG00000040362	DDX23	76	79.851	Rhinopithecus_bieti
ENSCSAVG00000004158	-	100	67.350	ENSRROG00000028964	DDX23	83	67.350	Rhinopithecus_roxellana
ENSCSAVG00000004158	-	100	59.320	ENSRROG00000045747	-	88	59.320	Rhinopithecus_roxellana
ENSCSAVG00000004158	-	93	37.708	YDR243C	-	88	33.056	Saccharomyces_cerevisiae
ENSCSAVG00000004158	-	100	67.496	ENSSBOG00000025799	DDX23	83	67.496	Saimiri_boliviensis_boliviensis
ENSCSAVG00000004158	-	100	67.643	ENSSHAG00000006590	DDX23	83	67.643	Sarcophilus_harrisii
ENSCSAVG00000004158	-	100	67.595	ENSSFOG00015013273	ddx23	83	67.643	Scleropages_formosus
ENSCSAVG00000004158	-	100	67.302	ENSSMAG00000000529	ddx23	88	66.718	Scophthalmus_maximus
ENSCSAVG00000004158	-	100	66.716	ENSSDUG00000022459	ddx23	91	66.667	Seriola_dumerili
ENSCSAVG00000004158	-	100	66.716	ENSSLDG00000010453	ddx23	84	67.201	Seriola_lalandi_dorsalis
ENSCSAVG00000004158	-	92	81.616	ENSSARG00000004534	DDX23	76	81.616	Sorex_araneus
ENSCSAVG00000004158	-	100	67.643	ENSSPUG00000016044	DDX23	83	67.643	Sphenodon_punctatus
ENSCSAVG00000004158	-	100	67.449	ENSSPAG00000016482	ddx23	84	67.493	Stegastes_partitus
ENSCSAVG00000004158	-	100	67.350	ENSSSCG00000000176	DDX23	83	67.350	Sus_scrofa
ENSCSAVG00000004158	-	100	64.943	ENSTRUG00000000455	ddx23	86	66.129	Takifugu_rubripes
ENSCSAVG00000004158	-	66	78.816	ENSTNIG00000019621	ddx23	100	79.580	Tetraodon_nigroviridis
ENSCSAVG00000004158	-	100	67.350	ENSTBEG00000016909	DDX23	83	67.350	Tupaia_belangeri
ENSCSAVG00000004158	-	93	81.616	ENSTTRG00000004604	DDX23	83	64.629	Tursiops_truncatus
ENSCSAVG00000004158	-	100	67.350	ENSUAMG00000027082	DDX23	83	67.350	Ursus_americanus
ENSCSAVG00000004158	-	100	67.350	ENSUMAG00000006538	DDX23	83	67.350	Ursus_maritimus
ENSCSAVG00000004158	-	100	67.350	ENSVVUG00000019648	DDX23	83	67.350	Vulpes_vulpes
ENSCSAVG00000004158	-	95	73.617	ENSXETG00000009807	ddx23	83	64.474	Xenopus_tropicalis
ENSCSAVG00000004158	-	100	66.226	ENSXCOG00000011648	ddx23	88	66.327	Xiphophorus_couchianus
ENSCSAVG00000004158	-	100	67.302	ENSXMAG00000017387	ddx23	84	67.347	Xiphophorus_maculatus