EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000004186 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 13064 bases
Position: chrreftig_244:167219-180282
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000007006	Utp12	PF04003.12	1.5e-27	1	1
ENSCSAVP00000007007	Utp12	PF04003.12	1.6e-27	1	1
ENSCSAVP00000007004	Utp12	PF04003.12	1.6e-27	1	1
ENSCSAVP00000007008	Utp12	PF04003.12	3.5e-24	1	1
ENSCSAVP00000007005	Utp12	PF04003.12	1.2e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000007098	-	2765	-	ENSCSAVP00000007008	905 (aa)	-	H2YNV0
ENSCSAVT00000007096	-	2719	-	ENSCSAVP00000007006	868 (aa)	-	H2YNU8
ENSCSAVT00000007097	-	2732	-	ENSCSAVP00000007007	883 (aa)	-	H2YNU9
ENSCSAVT00000007094	-	2987	-	ENSCSAVP00000007004	892 (aa)	-	H2YNU6
ENSCSAVT00000007095	-	1054	-	ENSCSAVP00000007005	195 (aa)	-	H2YNU7

Gene Model

Click here to download ENSCSAVG00000004186's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004186's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000004186	-	97	56.492	ENSG00000241945	PWP2	96	56.834	Homo_sapiens
ENSCSAVG00000004186	-	97	57.208	ENSAPOG00000021522	pwp2h	98	56.459	Acanthochromis_polyacanthus
ENSCSAVG00000004186	-	97	56.422	ENSAMEG00000010907	-	96	56.865	Ailuropoda_melanoleuca
ENSCSAVG00000004186	-	97	57.127	ENSACIG00000024109	pwp2h	98	56.796	Amphilophus_citrinellus
ENSCSAVG00000004186	-	97	58.105	ENSAOCG00000014853	pwp2h	97	57.991	Amphiprion_ocellaris
ENSCSAVG00000004186	-	97	57.991	ENSAPEG00000008152	pwp2h	98	57.159	Amphiprion_percula
ENSCSAVG00000004186	-	97	57.697	ENSATEG00000015493	pwp2h	100	58.372	Anabas_testudineus
ENSCSAVG00000004186	-	98	59.142	ENSAPLG00000010371	-	98	58.771	Anas_platyrhynchos
ENSCSAVG00000004186	-	99	58.370	ENSACAG00000017861	-	99	58.370	Anolis_carolinensis
ENSCSAVG00000004186	-	97	56.834	ENSANAG00000034845	-	95	57.062	Aotus_nancymaae
ENSCSAVG00000004186	-	97	56.625	ENSACLG00000011425	pwp2h	98	55.580	Astatotilapia_calliptera
ENSCSAVG00000004186	-	98	54.355	ENSAMXG00000007988	pwp2h	97	54.355	Astyanax_mexicanus
ENSCSAVG00000004186	-	97	57.078	ENSBTAG00000007105	-	95	57.078	Bos_taurus
ENSCSAVG00000004186	-	97	39.160	WBGene00018891	F55F8.3	97	38.556	Caenorhabditis_elegans
ENSCSAVG00000004186	-	97	56.393	ENSCJAG00000005570	-	95	56.393	Callithrix_jacchus
ENSCSAVG00000004186	-	97	58.654	ENSCAFG00000010687	-	98	56.763	Canis_familiaris
ENSCSAVG00000004186	-	97	58.654	ENSCAFG00020019199	-	89	56.208	Canis_lupus_dingo
ENSCSAVG00000004186	-	97	53.228	ENSCHIG00000026362	-	95	53.341	Capra_hircus
ENSCSAVG00000004186	-	97	56.357	ENSTSYG00000009022	-	95	56.357	Carlito_syrichta
ENSCSAVG00000004186	-	99	55.902	ENSCAPG00000017934	-	98	55.741	Cavia_aperea
ENSCSAVG00000004186	-	97	56.477	ENSCPOG00000023616	-	95	56.899	Cavia_porcellus
ENSCSAVG00000004186	-	97	56.442	ENSCCAG00000034616	-	95	56.784	Cebus_capucinus
ENSCSAVG00000004186	-	97	56.150	ENSCATG00000032550	-	96	56.492	Cercocebus_atys
ENSCSAVG00000004186	-	99	56.425	ENSCLAG00000009503	-	98	56.648	Chinchilla_lanigera
ENSCSAVG00000004186	-	97	55.923	ENSCSAG00000007903	-	96	56.264	Chlorocebus_sabaeus
ENSCSAVG00000004186	-	97	57.469	ENSCPBG00000018335	-	98	57.143	Chrysemys_picta_bellii
ENSCSAVG00000004186	-	97	56.556	ENSCANG00000028013	-	96	56.784	Colobus_angolensis_palliatus
ENSCSAVG00000004186	-	99	56.382	ENSCGRG00001020074	Pwp2	97	56.604	Cricetulus_griseus_chok1gshd
ENSCSAVG00000004186	-	99	56.382	ENSCGRG00000003750	Pwp2	97	56.604	Cricetulus_griseus_crigri
ENSCSAVG00000004186	-	97	56.800	ENSCSEG00000000861	pwp2h	98	56.201	Cynoglossus_semilaevis
ENSCSAVG00000004186	-	97	56.378	ENSCVAG00000000996	pwp2h	99	56.062	Cyprinodon_variegatus
ENSCSAVG00000004186	-	97	56.292	ENSDARG00000037109	pwp2h	95	56.292	Danio_rerio
ENSCSAVG00000004186	-	87	59.615	ENSDNOG00000012128	-	98	56.739	Dasypus_novemcinctus
ENSCSAVG00000004186	-	92	54.262	ENSDORG00000003015	Pwp2	94	53.613	Dipodomys_ordii
ENSCSAVG00000004186	-	99	45.210	FBgn0033557	CG12325	97	45.210	Drosophila_melanogaster
ENSCSAVG00000004186	-	85	55.599	ENSEBUG00000003140	pwp2h	96	55.076	Eptatretus_burgeri
ENSCSAVG00000004186	-	97	56.314	ENSEASG00005001651	-	95	56.542	Equus_asinus_asinus
ENSCSAVG00000004186	-	97	56.314	ENSECAG00000006090	-	96	56.747	Equus_caballus
ENSCSAVG00000004186	-	97	56.527	ENSELUG00000001878	pwp2h	96	56.867	Esox_lucius
ENSCSAVG00000004186	-	97	57.143	ENSFCAG00000004487	-	96	57.143	Felis_catus
ENSCSAVG00000004186	-	99	57.650	ENSFALG00000012300	-	99	58.250	Ficedula_albicollis
ENSCSAVG00000004186	-	99	55.506	ENSFDAG00000016140	-	97	55.618	Fukomys_damarensis
ENSCSAVG00000004186	-	95	57.425	ENSFHEG00000009078	pwp2h	100	57.541	Fundulus_heteroclitus
ENSCSAVG00000004186	-	97	55.454	ENSGMOG00000016522	pwp2h	95	55.454	Gadus_morhua
ENSCSAVG00000004186	-	99	58.047	ENSGALG00000045726	-	98	58.047	Gallus_gallus
ENSCSAVG00000004186	-	97	57.256	ENSGAFG00000011340	pwp2h	96	57.823	Gambusia_affinis
ENSCSAVG00000004186	-	97	55.239	ENSGACG00000014928	pwp2h	99	58.437	Gasterosteus_aculeatus
ENSCSAVG00000004186	-	99	57.414	ENSGAGG00000005377	-	98	57.414	Gopherus_agassizii
ENSCSAVG00000004186	-	97	56.314	ENSGGOG00000041875	-	96	56.428	Gorilla_gorilla
ENSCSAVG00000004186	-	97	56.625	ENSHBUG00000005530	pwp2h	98	55.580	Haplochromis_burtoni
ENSCSAVG00000004186	-	97	56.686	ENSHGLG00000017401	-	96	56.816	Heterocephalus_glaber_female
ENSCSAVG00000004186	-	97	56.128	ENSHGLG00100013888	-	96	56.257	Heterocephalus_glaber_male
ENSCSAVG00000004186	-	97	55.290	ENSHCOG00000018121	pwp2h	97	54.778	Hippocampus_comes
ENSCSAVG00000004186	-	100	56.243	ENSIPUG00000014074	pwp2h	99	55.940	Ictalurus_punctatus
ENSCSAVG00000004186	-	97	56.834	ENSSTOG00000014194	-	95	57.175	Ictidomys_tridecemlineatus
ENSCSAVG00000004186	-	99	56.700	ENSJJAG00000013039	Pwp2	98	56.858	Jaculus_jaculus
ENSCSAVG00000004186	-	97	56.442	ENSKMAG00000003143	pwp2h	96	56.442	Kryptolebias_marmoratus
ENSCSAVG00000004186	-	97	54.835	ENSLBEG00000006388	pwp2h	98	54.374	Labrus_bergylta
ENSCSAVG00000004186	-	94	56.792	ENSLACG00000006084	pwp2h	98	56.792	Latimeria_chalumnae
ENSCSAVG00000004186	-	99	56.902	ENSLOCG00000003663	pwp2h	97	56.823	Lepisosteus_oculatus
ENSCSAVG00000004186	-	95	57.442	ENSLAFG00000003871	-	100	57.258	Loxodonta_africana
ENSCSAVG00000004186	-	97	56.036	ENSMFAG00000044448	-	96	56.378	Macaca_fascicularis
ENSCSAVG00000004186	-	97	56.036	ENSMMUG00000005271	PWP2	96	56.378	Macaca_mulatta
ENSCSAVG00000004186	-	97	56.150	ENSMNEG00000030782	-	96	56.492	Macaca_nemestrina
ENSCSAVG00000004186	-	97	56.264	ENSMLEG00000039860	-	96	56.606	Mandrillus_leucophaeus
ENSCSAVG00000004186	-	97	57.094	ENSMAMG00000022327	pwp2h	97	57.474	Mastacembelus_armatus
ENSCSAVG00000004186	-	97	56.271	ENSMZEG00005015448	pwp2h	98	55.801	Maylandia_zebra
ENSCSAVG00000004186	-	98	57.692	ENSMGAG00000014596	-	98	51.969	Meleagris_gallopavo
ENSCSAVG00000004186	-	90	49.867	ENSMAUG00000020265	Pwp2	78	65.693	Mesocricetus_auratus
ENSCSAVG00000004186	-	97	57.078	ENSMICG00000001002	-	95	57.078	Microcebus_murinus
ENSCSAVG00000004186	-	99	56.111	ENSMOCG00000003844	Pwp2	97	55.951	Microtus_ochrogaster
ENSCSAVG00000004186	-	97	54.931	ENSMMOG00000000882	pwp2h	99	55.339	Mola_mola
ENSCSAVG00000004186	-	99	56.952	ENSMODG00000021081	-	98	57.475	Monodelphis_domestica
ENSCSAVG00000004186	-	97	56.997	ENSMALG00000000821	pwp2h	96	57.338	Monopterus_albus
ENSCSAVG00000004186	-	99	56.027	MGP_CAROLIEiJ_G0015505	Pwp2	97	56.138	Mus_caroli
ENSCSAVG00000004186	-	99	56.076	ENSMUSG00000032834	Pwp2	97	56.076	Mus_musculus
ENSCSAVG00000004186	-	99	56.013	MGP_PahariEiJ_G0030918	Pwp2	97	56.076	Mus_pahari
ENSCSAVG00000004186	-	99	56.076	MGP_SPRETEiJ_G0016318	Pwp2	97	56.076	Mus_spretus
ENSCSAVG00000004186	-	87	56.731	ENSMPUG00000009936	-	98	54.847	Mustela_putorius_furo
ENSCSAVG00000004186	-	97	52.847	ENSMLUG00000004823	-	95	52.847	Myotis_lucifugus
ENSCSAVG00000004186	-	99	56.425	ENSNGAG00000021106	Pwp2	98	56.425	Nannospalax_galili
ENSCSAVG00000004186	-	97	55.729	ENSNBRG00000016527	pwp2h	98	55.277	Neolamprologus_brichardi
ENSCSAVG00000004186	-	97	55.416	ENSNLEG00000001928	-	99	55.758	Nomascus_leucogenys
ENSCSAVG00000004186	-	99	56.000	ENSODEG00000013073	-	99	56.000	Octodon_degus
ENSCSAVG00000004186	-	97	56.738	ENSONIG00000007136	pwp2h	98	56.133	Oreochromis_niloticus
ENSCSAVG00000004186	-	97	58.550	ENSOANG00000006477	-	96	58.617	Ornithorhynchus_anatinus
ENSCSAVG00000004186	-	97	56.800	ENSORLG00000000066	pwp2h	96	56.849	Oryzias_latipes
ENSCSAVG00000004186	-	97	56.914	ENSORLG00020000321	pwp2h	96	56.963	Oryzias_latipes_hni
ENSCSAVG00000004186	-	97	53.486	ENSORLG00015014731	pwp2h	96	53.486	Oryzias_latipes_hsok
ENSCSAVG00000004186	-	96	55.397	ENSOMEG00000020671	pwp2h	97	55.397	Oryzias_melastigma
ENSCSAVG00000004186	-	97	57.127	ENSOGAG00000012473	-	96	57.355	Otolemur_garnettii
ENSCSAVG00000004186	-	97	56.200	ENSOARG00000011672	-	95	57.143	Ovis_aries
ENSCSAVG00000004186	-	97	56.492	ENSPPAG00000037874	-	96	56.834	Pan_paniscus
ENSCSAVG00000004186	-	97	56.463	ENSPPRG00000011088	-	96	57.208	Panthera_pardus
ENSCSAVG00000004186	-	97	51.373	ENSPTIG00000020872	-	95	51.367	Panthera_tigris_altaica
ENSCSAVG00000004186	-	97	56.492	ENSPTRG00000013969	-	96	56.834	Pan_troglodytes
ENSCSAVG00000004186	-	97	56.150	ENSPANG00000006267	-	96	56.492	Papio_anubis
ENSCSAVG00000004186	-	95	57.523	ENSPKIG00000002693	pwp2h	100	58.403	Paramormyrops_kingsleyae
ENSCSAVG00000004186	-	97	57.811	ENSPSIG00000009783	-	98	57.480	Pelodiscus_sinensis
ENSCSAVG00000004186	-	97	56.784	ENSPMGG00000022349	pwp2h	98	55.964	Periophthalmus_magnuspinnatus
ENSCSAVG00000004186	-	97	56.818	ENSPEMG00000009968	Pwp2	97	56.174	Peromyscus_maniculatus_bairdii
ENSCSAVG00000004186	-	53	52.885	ENSPMAG00000001134	-	99	52.215	Petromyzon_marinus
ENSCSAVG00000004186	-	99	57.842	ENSPCIG00000014548	-	98	58.361	Phascolarctos_cinereus
ENSCSAVG00000004186	-	97	56.803	ENSPFOG00000014764	pwp2h	96	56.932	Poecilia_formosa
ENSCSAVG00000004186	-	97	56.689	ENSPLAG00000011559	pwp2h	96	56.818	Poecilia_latipinna
ENSCSAVG00000004186	-	97	57.143	ENSPMEG00000021347	pwp2h	96	57.273	Poecilia_mexicana
ENSCSAVG00000004186	-	97	57.029	ENSPREG00000015887	pwp2h	96	57.548	Poecilia_reticulata
ENSCSAVG00000004186	-	97	56.571	ENSPPYG00000011478	-	95	56.571	Pongo_abelii
ENSCSAVG00000004186	-	97	53.653	ENSPCAG00000004676	-	96	53.653	Procavia_capensis
ENSCSAVG00000004186	-	97	56.948	ENSPCOG00000012856	-	96	56.948	Propithecus_coquereli
ENSCSAVG00000004186	-	97	52.566	ENSPVAG00000002312	-	96	52.566	Pteropus_vampyrus
ENSCSAVG00000004186	-	87	59.615	ENSPNYG00000008379	pwp2h	97	54.481	Pundamilia_nyererei
ENSCSAVG00000004186	-	98	55.050	ENSPNAG00000017876	pwp2h	97	55.150	Pygocentrus_nattereri
ENSCSAVG00000004186	-	99	56.222	ENSRNOG00000001210	Pwp2	98	56.396	Rattus_norvegicus
ENSCSAVG00000004186	-	97	56.214	ENSRBIG00000034365	-	96	56.328	Rhinopithecus_bieti
ENSCSAVG00000004186	-	97	56.328	ENSRROG00000031946	-	96	56.442	Rhinopithecus_roxellana
ENSCSAVG00000004186	-	99	42.111	YCR057C	PWP2	94	42.081	Saccharomyces_cerevisiae
ENSCSAVG00000004186	-	97	55.899	ENSSBOG00000034554	-	95	56.014	Saimiri_boliviensis_boliviensis
ENSCSAVG00000004186	-	97	57.692	ENSSHAG00000011047	-	97	50.360	Sarcophilus_harrisii
ENSCSAVG00000004186	-	97	57.159	ENSSFOG00015003316	pwp2	96	57.159	Scleropages_formosus
ENSCSAVG00000004186	-	97	56.670	ENSSMAG00000011839	pwp2h	97	55.630	Scophthalmus_maximus
ENSCSAVG00000004186	-	97	57.355	ENSSDUG00000011462	pwp2h	95	57.192	Seriola_dumerili
ENSCSAVG00000004186	-	97	56.948	ENSSLDG00000008651	pwp2h	97	56.013	Seriola_lalandi_dorsalis
ENSCSAVG00000004186	-	97	57.257	ENSSPUG00000002980	-	98	57.257	Sphenodon_punctatus
ENSCSAVG00000004186	-	97	57.014	ENSSPAG00000023368	pwp2h	98	56.098	Stegastes_partitus
ENSCSAVG00000004186	-	97	55.936	ENSSSCG00000029627	-	95	55.936	Sus_scrofa
ENSCSAVG00000004186	-	97	58.447	ENSTGUG00000005996	-	99	59.065	Taeniopygia_guttata
ENSCSAVG00000004186	-	64	57.041	ENSTGUG00000018216	-	99	57.245	Taeniopygia_guttata
ENSCSAVG00000004186	-	99	56.054	ENSTRUG00000013258	pwp2h	98	56.054	Takifugu_rubripes
ENSCSAVG00000004186	-	97	56.078	ENSTNIG00000010613	pwp2h	97	56.422	Tetraodon_nigroviridis
ENSCSAVG00000004186	-	82	59.583	ENSTBEG00000015597	-	88	59.125	Tupaia_belangeri
ENSCSAVG00000004186	-	95	56.909	ENSTTRG00000006728	-	100	56.909	Tursiops_truncatus
ENSCSAVG00000004186	-	97	56.670	ENSUAMG00000019031	-	98	55.925	Ursus_americanus
ENSCSAVG00000004186	-	97	54.702	ENSUMAG00000025481	-	98	54.009	Ursus_maritimus
ENSCSAVG00000004186	-	99	56.473	ENSVVUG00000024125	-	98	55.987	Vulpes_vulpes
ENSCSAVG00000004186	-	82	38.263	ENSXETG00000018002	pwp2	85	48.125	Xenopus_tropicalis
ENSCSAVG00000004186	-	97	52.834	ENSXCOG00000020474	pwp2h	96	53.689	Xiphophorus_couchianus
ENSCSAVG00000004186	-	97	56.576	ENSXMAG00000008124	pwp2h	96	57.321	Xiphophorus_maculatus