EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000004246 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 6789 bases
Position: chrreftig_19:60521-67309
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000007099	PABP	PF00658.18	6.9e-32	1	1
ENSCSAVP00000007101	PABP	PF00658.18	4e-31	1	1
ENSCSAVP00000007102	PABP	PF00658.18	4.1e-31	1	1
ENSCSAVP00000007100	PABP	PF00658.18	5.2e-31	1	1
ENSCSAVP00000007103	PABP	PF00658.18	5.4e-31	1	1
ENSCSAVP00000007102	RRM_5	PF13893.6	3.5e-10	1	2
ENSCSAVP00000007102	RRM_5	PF13893.6	3.5e-10	2	2
ENSCSAVP00000007100	RRM_5	PF13893.6	3.9e-10	1	2
ENSCSAVP00000007100	RRM_5	PF13893.6	3.9e-10	2	2
ENSCSAVP00000007103	RRM_5	PF13893.6	4.6e-10	1	2
ENSCSAVP00000007103	RRM_5	PF13893.6	4.6e-10	2	2
ENSCSAVP00000007101	RRM_5	PF13893.6	6.5e-10	1	1
ENSCSAVP00000007101	RRM_1	PF00076.22	1.7e-82	1	4
ENSCSAVP00000007101	RRM_1	PF00076.22	1.7e-82	2	4
ENSCSAVP00000007101	RRM_1	PF00076.22	1.7e-82	3	4
ENSCSAVP00000007101	RRM_1	PF00076.22	1.7e-82	4	4
ENSCSAVP00000007100	RRM_1	PF00076.22	2.5e-82	1	4
ENSCSAVP00000007100	RRM_1	PF00076.22	2.5e-82	2	4
ENSCSAVP00000007100	RRM_1	PF00076.22	2.5e-82	3	4
ENSCSAVP00000007100	RRM_1	PF00076.22	2.5e-82	4	4
ENSCSAVP00000007103	RRM_1	PF00076.22	2.8e-82	1	4
ENSCSAVP00000007103	RRM_1	PF00076.22	2.8e-82	2	4
ENSCSAVP00000007103	RRM_1	PF00076.22	2.8e-82	3	4
ENSCSAVP00000007103	RRM_1	PF00076.22	2.8e-82	4	4
ENSCSAVP00000007102	RRM_1	PF00076.22	7.6e-82	1	4
ENSCSAVP00000007102	RRM_1	PF00076.22	7.6e-82	2	4
ENSCSAVP00000007102	RRM_1	PF00076.22	7.6e-82	3	4
ENSCSAVP00000007102	RRM_1	PF00076.22	7.6e-82	4	4
ENSCSAVP00000007099	RRM_1	PF00076.22	6e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000007195	-	2031	-	ENSCSAVP00000007103	635 (aa)	-	H2YP45
ENSCSAVT00000007194	-	1914	-	ENSCSAVP00000007102	571 (aa)	-	H2YP44
ENSCSAVT00000007193	-	1813	-	ENSCSAVP00000007101	580 (aa)	-	H2YP43
ENSCSAVT00000007192	-	2256	-	ENSCSAVP00000007100	621 (aa)	-	H2YP42
ENSCSAVT00000007191	-	1265	-	ENSCSAVP00000007099	292 (aa)	-	H2YP41

Gene Model

Click here to download ENSCSAVG00000004246's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004246's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000004246	-	71	34.247	ENSCSAVG00000007538	-	69	34.940
ENSCSAVG00000004246	-	97	97.203	ENSCSAVG00000003102	-	100	97.315
ENSCSAVG00000004246	-	63	37.398	ENSCSAVG00000007809	-	81	36.129
ENSCSAVG00000004246	-	72	36.923	ENSCSAVG00000003440	-	98	31.646
ENSCSAVG00000004246	-	54	31.461	ENSCSAVG00000011781	-	88	31.461
ENSCSAVG00000004246	-	63	32.468	ENSCSAVG00000009321	-	65	37.179

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000004246	-	89	78.313	ENSG00000101104	PABPC1L	99	68.098	Homo_sapiens
ENSCSAVG00000004246	-	89	71.523	ENSAPOG00000010842	pabpc1l	99	58.946	Acanthochromis_polyacanthus
ENSCSAVG00000004246	-	87	70.833	ENSAMEG00000004099	PABPC1L	99	56.875	Ailuropoda_melanoleuca
ENSCSAVG00000004246	-	96	64.734	ENSACIG00000021004	-	98	73.333	Amphilophus_citrinellus
ENSCSAVG00000004246	-	89	71.523	ENSAOCG00000006167	-	99	58.439	Amphiprion_ocellaris
ENSCSAVG00000004246	-	97	69.309	ENSAPEG00000010558	-	92	78.922	Amphiprion_percula
ENSCSAVG00000004246	-	94	77.500	ENSATEG00000007428	pabpc1l	99	65.217	Anabas_testudineus
ENSCSAVG00000004246	-	90	78.824	ENSAPLG00000008415	PABPC1L	84	78.824	Anas_platyrhynchos
ENSCSAVG00000004246	-	89	72.857	ENSACAG00000011841	PABPC1L	98	70.332	Anolis_carolinensis
ENSCSAVG00000004246	-	98	58.610	ENSANAG00000026826	PABPC1L	98	59.425	Aotus_nancymaae
ENSCSAVG00000004246	-	89	71.523	ENSACLG00000024791	pabpc1l	99	60.480	Astatotilapia_calliptera
ENSCSAVG00000004246	-	89	72.857	ENSAMXG00000013552	pabpc1l	99	60.835	Astyanax_mexicanus
ENSCSAVG00000004246	-	67	54.618	ENSBTAG00000016849	PABPC1L	73	54.772	Bos_taurus
ENSCSAVG00000004246	-	61	83.226	ENSBTAG00000055300	-	100	81.176	Bos_taurus
ENSCSAVG00000004246	-	98	59.242	ENSCJAG00000017628	PABPC1L	98	68.782	Callithrix_jacchus
ENSCSAVG00000004246	-	62	80.745	ENSCJAG00000038506	-	99	80.745	Callithrix_jacchus
ENSCSAVG00000004246	-	94	66.832	ENSCAFG00000009573	PABPC1L	78	76.471	Canis_familiaris
ENSCSAVG00000004246	-	85	78.313	ENSCAFG00020013828	PABPC1L	80	76.471	Canis_lupus_dingo
ENSCSAVG00000004246	-	87	68.571	ENSCHIG00000025759	PABPC1L	91	58.252	Capra_hircus
ENSCSAVG00000004246	-	89	70.000	ENSTSYG00000006645	PABPC1L	99	58.946	Carlito_syrichta
ENSCSAVG00000004246	-	77	77.108	ENSCAPG00000014519	PABPC1L	98	55.535	Cavia_aperea
ENSCSAVG00000004246	-	86	77.108	ENSCPOG00000013633	PABPC1L	79	77.108	Cavia_porcellus
ENSCSAVG00000004246	-	89	71.739	ENSCCAG00000023338	PABPC1L	98	68.782	Cebus_capucinus
ENSCSAVG00000004246	-	89	79.518	ENSCATG00000034065	PABPC1L	98	60.193	Cercocebus_atys
ENSCSAVG00000004246	-	82	78.313	ENSCLAG00000005298	PABPC1L	97	58.194	Chinchilla_lanigera
ENSCSAVG00000004246	-	89	79.518	ENSCSAG00000014242	PABPC1L	98	60.193	Chlorocebus_sabaeus
ENSCSAVG00000004246	-	75	65.438	ENSCPBG00000017755	-	99	65.533	Chrysemys_picta_bellii
ENSCSAVG00000004246	-	58	89.344	ENSCPBG00000007810	-	83	89.344	Chrysemys_picta_bellii
ENSCSAVG00000004246	-	99	87.838	ENSCING00000002796	-	98	80.754	Ciona_intestinalis
ENSCSAVG00000004246	-	89	79.661	ENSCANG00000037530	PABPC1L	76	79.661	Colobus_angolensis_palliatus
ENSCSAVG00000004246	-	96	57.167	ENSCGRG00001021938	Pabpc1l	98	56.441	Cricetulus_griseus_chok1gshd
ENSCSAVG00000004246	-	96	57.167	ENSCGRG00000007946	Pabpc1l	98	56.441	Cricetulus_griseus_crigri
ENSCSAVG00000004246	-	96	71.111	ENSCSEG00000021295	pabpc1l	99	71.111	Cynoglossus_semilaevis
ENSCSAVG00000004246	-	98	68.537	ENSCVAG00000015943	-	99	86.364	Cyprinodon_variegatus
ENSCSAVG00000004246	-	90	75.000	ENSDARG00000002597	pabpc1l	90	86.364	Danio_rerio
ENSCSAVG00000004246	-	98	58.824	ENSDNOG00000048450	PABPC1L	98	59.933	Dasypus_novemcinctus
ENSCSAVG00000004246	-	83	78.313	ENSDORG00000001067	Pabpc1l	80	78.313	Dipodomys_ordii
ENSCSAVG00000004246	-	92	71.660	ENSETEG00000009969	PABPC1L	68	71.660	Echinops_telfairi
ENSCSAVG00000004246	-	61	81.290	ENSEASG00005023408	-	100	81.290	Equus_asinus_asinus
ENSCSAVG00000004246	-	51	66.187	ENSEASG00005023407	-	85	52.727	Equus_asinus_asinus
ENSCSAVG00000004246	-	71	56.087	ENSECAG00000040139	-	80	59.009	Equus_caballus
ENSCSAVG00000004246	-	89	75.904	ENSEEUG00000005978	PABPC1L	81	75.904	Erinaceus_europaeus
ENSCSAVG00000004246	-	96	70.694	ENSELUG00000001811	pabpc1l	99	77.174	Esox_lucius
ENSCSAVG00000004246	-	98	59.425	ENSFCAG00000011692	PABPC1L	98	59.259	Felis_catus
ENSCSAVG00000004246	-	79	63.974	ENSFALG00000005372	PABPC1L	80	60.324	Ficedula_albicollis
ENSCSAVG00000004246	-	96	59.184	ENSFDAG00000008291	PABPC1L	97	65.714	Fukomys_damarensis
ENSCSAVG00000004246	-	89	72.185	ENSFHEG00000003398	pabpc1l	99	60.032	Fundulus_heteroclitus
ENSCSAVG00000004246	-	92	69.536	ENSGMOG00000004437	pabpc1l	98	60.000	Gadus_morhua
ENSCSAVG00000004246	-	90	72.143	ENSGALG00000004123	PABPC1L	98	76.667	Gallus_gallus
ENSCSAVG00000004246	-	98	57.822	ENSGAFG00000021057	pabpc1l	99	57.822	Gambusia_affinis
ENSCSAVG00000004246	-	89	70.861	ENSGACG00000002792	pabpc1l	99	58.852	Gasterosteus_aculeatus
ENSCSAVG00000004246	-	96	64.144	ENSGAGG00000000589	PABPC1L	90	79.310	Gopherus_agassizii
ENSCSAVG00000004246	-	89	78.313	ENSGGOG00000004584	PABPC1L	98	59.084	Gorilla_gorilla
ENSCSAVG00000004246	-	89	71.523	ENSHBUG00000006134	pabpc1l	99	61.592	Haplochromis_burtoni
ENSCSAVG00000004246	-	86	79.518	ENSHGLG00000008434	PABPC1L	97	59.024	Heterocephalus_glaber_female
ENSCSAVG00000004246	-	86	79.518	ENSHGLG00100012151	PABPC1L	97	59.024	Heterocephalus_glaber_male
ENSCSAVG00000004246	-	63	85.714	ENSHGLG00100019506	-	99	86.061	Heterocephalus_glaber_male
ENSCSAVG00000004246	-	97	68.992	ENSHCOG00000009270	pabpc1l	100	60.000	Hippocampus_comes
ENSCSAVG00000004246	-	63	58.101	ENSIPUG00000006780	-	87	58.101	Ictalurus_punctatus
ENSCSAVG00000004246	-	63	58.011	ENSIPUG00000006760	-	91	58.011	Ictalurus_punctatus
ENSCSAVG00000004246	-	90	72.185	ENSIPUG00000012602	pabpc1l	100	61.785	Ictalurus_punctatus
ENSCSAVG00000004246	-	89	69.307	ENSSTOG00000003739	PABPC1L	98	60.261	Ictidomys_tridecemlineatus
ENSCSAVG00000004246	-	96	47.458	ENSJJAG00000022406	Pabpc1l	97	46.358	Jaculus_jaculus
ENSCSAVG00000004246	-	89	72.185	ENSKMAG00000016847	pabpc1l	99	57.771	Kryptolebias_marmoratus
ENSCSAVG00000004246	-	96	66.102	ENSLBEG00000010084	pabpc1l	99	60.669	Labrus_bergylta
ENSCSAVG00000004246	-	96	70.588	ENSLACG00000005762	PABPC1L	98	70.588	Latimeria_chalumnae
ENSCSAVG00000004246	-	89	74.286	ENSLOCG00000007519	pabpc1l	81	79.545	Lepisosteus_oculatus
ENSCSAVG00000004246	-	96	67.419	ENSLAFG00000003553	PABPC1L	99	67.419	Loxodonta_africana
ENSCSAVG00000004246	-	89	78.313	ENSMFAG00000040365	PABPC1L	98	60.032	Macaca_fascicularis
ENSCSAVG00000004246	-	98	58.454	ENSMNEG00000032298	PABPC1L	98	69.289	Macaca_nemestrina
ENSCSAVG00000004246	-	89	79.518	ENSMLEG00000043139	PABPC1L	98	60.193	Mandrillus_leucophaeus
ENSCSAVG00000004246	-	89	70.199	ENSMAMG00000011854	pabpc1l	100	64.989	Mastacembelus_armatus
ENSCSAVG00000004246	-	89	71.523	ENSMZEG00005023713	pabpc1l	99	60.480	Maylandia_zebra
ENSCSAVG00000004246	-	90	72.857	ENSMGAG00000003674	PABPC1L	99	58.552	Meleagris_gallopavo
ENSCSAVG00000004246	-	98	56.061	ENSMOCG00000013186	Pabpc1l	99	55.556	Microtus_ochrogaster
ENSCSAVG00000004246	-	97	66.184	ENSMMOG00000020574	-	91	85.606	Mola_mola
ENSCSAVG00000004246	-	93	58.626	ENSMODG00000016198	PABPC1L	99	59.052	Monodelphis_domestica
ENSCSAVG00000004246	-	96	59.217	ENSMALG00000021622	pabpc1l	100	69.543	Monopterus_albus
ENSCSAVG00000004246	-	98	55.645	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	56.013	Mus_caroli
ENSCSAVG00000004246	-	98	55.806	ENSMUSG00000054582	Pabpc1l	99	56.013	Mus_musculus
ENSCSAVG00000004246	-	98	55.806	MGP_PahariEiJ_G0026071	Pabpc1l	99	55.464	Mus_pahari
ENSCSAVG00000004246	-	98	55.645	MGP_SPRETEiJ_G0025549	Pabpc1l	99	56.013	Mus_spretus
ENSCSAVG00000004246	-	96	69.565	ENSMPUG00000017646	PABPC1L	98	69.565	Mustela_putorius_furo
ENSCSAVG00000004246	-	97	55.140	ENSMLUG00000006324	PABPC1L	98	55.399	Myotis_lucifugus
ENSCSAVG00000004246	-	98	56.140	ENSNGAG00000010458	Pabpc1l	98	56.683	Nannospalax_galili
ENSCSAVG00000004246	-	98	71.523	ENSNBRG00000016633	pabpc1l	98	77.381	Neolamprologus_brichardi
ENSCSAVG00000004246	-	98	54.058	ENSMEUG00000007905	-	76	80.000	Notamacropus_eugenii
ENSCSAVG00000004246	-	97	59.612	ENSOPRG00000011846	PABPC1L	97	59.612	Ochotona_princeps
ENSCSAVG00000004246	-	60	82.313	ENSODEG00000002920	-	95	80.892	Octodon_degus
ENSCSAVG00000004246	-	89	66.429	ENSODEG00000015482	PABPC1L	96	66.429	Octodon_degus
ENSCSAVG00000004246	-	89	71.523	ENSONIG00000017314	pabpc1l	99	60.835	Oreochromis_niloticus
ENSCSAVG00000004246	-	73	77.419	ENSOANG00000015793	-	75	77.419	Ornithorhynchus_anatinus
ENSCSAVG00000004246	-	84	71.000	ENSOCUG00000003005	PABPC1L	93	78.824	Oryctolagus_cuniculus
ENSCSAVG00000004246	-	93	75.904	ENSORLG00000010322	pabpc1l	98	78.481	Oryzias_latipes
ENSCSAVG00000004246	-	96	66.098	ENSORLG00020021193	pabpc1l	98	78.481	Oryzias_latipes_hni
ENSCSAVG00000004246	-	93	75.904	ENSORLG00015017018	pabpc1l	98	78.481	Oryzias_latipes_hsok
ENSCSAVG00000004246	-	96	61.017	ENSOMEG00000010789	pabpc1l	99	61.159	Oryzias_melastigma
ENSCSAVG00000004246	-	89	79.518	ENSOGAG00000032999	PABPC1L	85	77.647	Otolemur_garnettii
ENSCSAVG00000004246	-	89	72.222	ENSOARG00000004578	PABPC1L	98	69.821	Ovis_aries
ENSCSAVG00000004246	-	89	78.313	ENSPPAG00000039677	PABPC1L	98	60.193	Pan_paniscus
ENSCSAVG00000004246	-	67	61.468	ENSPPRG00000019327	-	98	61.846	Panthera_pardus
ENSCSAVG00000004246	-	96	60.235	ENSPTIG00000006524	PABPC1L	99	59.516	Panthera_tigris_altaica
ENSCSAVG00000004246	-	67	68.489	ENSPTRG00000013531	PABPC1L	99	68.098	Pan_troglodytes
ENSCSAVG00000004246	-	89	79.518	ENSPANG00000018788	PABPC1L	98	60.193	Papio_anubis
ENSCSAVG00000004246	-	66	90.598	ENSPKIG00000016810	-	93	87.879	Paramormyrops_kingsleyae
ENSCSAVG00000004246	-	89	72.143	ENSPKIG00000007322	pabpc1l	99	65.668	Paramormyrops_kingsleyae
ENSCSAVG00000004246	-	71	68.317	ENSPSIG00000013289	PABPC1L	97	68.370	Pelodiscus_sinensis
ENSCSAVG00000004246	-	61	54.774	ENSPMGG00000023121	-	89	57.592	Periophthalmus_magnuspinnatus
ENSCSAVG00000004246	-	58	85.821	ENSPMGG00000023117	pabpc1l	99	85.821	Periophthalmus_magnuspinnatus
ENSCSAVG00000004246	-	97	54.400	ENSPEMG00000020671	Pabpc1l	98	55.408	Peromyscus_maniculatus_bairdii
ENSCSAVG00000004246	-	89	71.523	ENSPFOG00000013241	pabpc1l	99	60.484	Poecilia_formosa
ENSCSAVG00000004246	-	89	71.523	ENSPLAG00000017490	-	99	61.592	Poecilia_latipinna
ENSCSAVG00000004246	-	89	71.523	ENSPMEG00000007677	pabpc1l	99	60.645	Poecilia_mexicana
ENSCSAVG00000004246	-	74	65.509	ENSPREG00000015886	pabpc1l	99	68.780	Poecilia_reticulata
ENSCSAVG00000004246	-	89	78.313	ENSPPYG00000011042	PABPC1L	98	59.807	Pongo_abelii
ENSCSAVG00000004246	-	64	86.275	ENSPCAG00000011787	-	71	86.275	Procavia_capensis
ENSCSAVG00000004246	-	98	61.156	ENSPCOG00000020630	PABPC1L	99	60.476	Propithecus_coquereli
ENSCSAVG00000004246	-	89	77.108	ENSPVAG00000012663	PABPC1L	99	57.097	Pteropus_vampyrus
ENSCSAVG00000004246	-	96	65.366	ENSPNYG00000004101	pabpc1l	98	77.381	Pundamilia_nyererei
ENSCSAVG00000004246	-	89	72.857	ENSPNAG00000021248	pabpc1l	100	55.732	Pygocentrus_nattereri
ENSCSAVG00000004246	-	99	54.618	ENSRNOG00000012750	Pabpc1l	99	55.319	Rattus_norvegicus
ENSCSAVG00000004246	-	96	69.036	ENSRBIG00000035381	PABPC1L	80	77.647	Rhinopithecus_bieti
ENSCSAVG00000004246	-	89	79.518	ENSRROG00000044498	PABPC1L	80	77.647	Rhinopithecus_roxellana
ENSCSAVG00000004246	-	98	59.242	ENSSBOG00000009532	-	98	68.782	Saimiri_boliviensis_boliviensis
ENSCSAVG00000004246	-	97	52.130	ENSSHAG00000011446	PABPC1L	87	75.862	Sarcophilus_harrisii
ENSCSAVG00000004246	-	96	72.379	ENSSFOG00015017304	pabpc1l	99	72.379	Scleropages_formosus
ENSCSAVG00000004246	-	89	70.199	ENSSMAG00000010516	pabpc1l	96	86.822	Scophthalmus_maximus
ENSCSAVG00000004246	-	96	67.150	ENSSDUG00000014743	pabpc1l	99	67.150	Seriola_dumerili
ENSCSAVG00000004246	-	96	64.548	ENSSLDG00000006981	pabpc1l	99	76.667	Seriola_lalandi_dorsalis
ENSCSAVG00000004246	-	96	70.332	ENSSPUG00000004233	PABPC1L	98	70.332	Sphenodon_punctatus
ENSCSAVG00000004246	-	91	77.108	ENSSPAG00000017137	pabpc1l	99	77.108	Stegastes_partitus
ENSCSAVG00000004246	-	89	69.474	ENSSSCG00000007382	PABPC1L	99	59.032	Sus_scrofa
ENSCSAVG00000004246	-	89	74.286	ENSTGUG00000005114	PABPC1L	99	63.283	Taeniopygia_guttata
ENSCSAVG00000004246	-	85	71.523	ENSTRUG00000011085	pabpc1l	97	59.411	Takifugu_rubripes
ENSCSAVG00000004246	-	86	69.930	ENSTNIG00000017903	pabpc1l	98	62.613	Tetraodon_nigroviridis
ENSCSAVG00000004246	-	92	68.367	ENSTBEG00000002851	PABPC1L	76	68.367	Tupaia_belangeri
ENSCSAVG00000004246	-	79	76.364	ENSTTRG00000007618	PABPC1L	86	73.973	Tursiops_truncatus
ENSCSAVG00000004246	-	98	59.543	ENSUAMG00000017682	PABPC1L	97	67.143	Ursus_americanus
ENSCSAVG00000004246	-	71	63.788	ENSUMAG00000025436	PABPC1L	90	63.818	Ursus_maritimus
ENSCSAVG00000004246	-	85	78.313	ENSVVUG00000018939	PABPC1L	98	62.846	Vulpes_vulpes
ENSCSAVG00000004246	-	89	70.199	ENSXETG00000022831	pabpc1l	98	58.320	Xenopus_tropicalis
ENSCSAVG00000004246	-	90	72.185	ENSXCOG00000005459	pabpc1l	99	83.217	Xiphophorus_couchianus
ENSCSAVG00000004246	-	89	72.185	ENSXMAG00000017135	pabpc1l	99	61.913	Xiphophorus_maculatus