EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000004304 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 25513 bases
Position: chrreftig_133:224813-250325
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000007199	zf-CCHC	PF00098.23	1.1e-38	1	5
ENSCSAVP00000007199	zf-CCHC	PF00098.23	1.1e-38	2	5
ENSCSAVP00000007199	zf-CCHC	PF00098.23	1.1e-38	3	5
ENSCSAVP00000007199	zf-CCHC	PF00098.23	1.1e-38	4	5
ENSCSAVP00000007199	zf-CCHC	PF00098.23	1.1e-38	5	5
ENSCSAVP00000007200	zf-CCHC	PF00098.23	2.5e-31	1	4
ENSCSAVP00000007200	zf-CCHC	PF00098.23	2.5e-31	2	4
ENSCSAVP00000007200	zf-CCHC	PF00098.23	2.5e-31	3	4
ENSCSAVP00000007200	zf-CCHC	PF00098.23	2.5e-31	4	4
ENSCSAVP00000007198	zf-CCHC	PF00098.23	2.5e-23	1	3
ENSCSAVP00000007198	zf-CCHC	PF00098.23	2.5e-23	2	3
ENSCSAVP00000007198	zf-CCHC	PF00098.23	2.5e-23	3	3
ENSCSAVP00000007201	zf-CCHC	PF00098.23	2.8e-23	1	3
ENSCSAVP00000007201	zf-CCHC	PF00098.23	2.8e-23	2	3
ENSCSAVP00000007201	zf-CCHC	PF00098.23	2.8e-23	3	3
ENSCSAVP00000007200	DEAD	PF00270.29	1.3e-47	1	1
ENSCSAVP00000007198	DEAD	PF00270.29	1.5e-47	1	1
ENSCSAVP00000007201	DEAD	PF00270.29	1.5e-47	1	1
ENSCSAVP00000007199	DEAD	PF00270.29	1.8e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000007294	-	2176	-	ENSCSAVP00000007201	688 (aa)	-	H2YPE3
ENSCSAVT00000007291	-	2763	-	ENSCSAVP00000007198	688 (aa)	-	H2YPE0
ENSCSAVT00000007292	-	3000	-	ENSCSAVP00000007199	771 (aa)	-	H2YPE1
ENSCSAVT00000007293	-	2237	-	ENSCSAVP00000007200	633 (aa)	-	H2YPE2

Gene Model

Click here to download ENSCSAVG00000004304's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004304's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000004304	-	60	32.895	ENSCSAVG00000011566	-	83	32.316
ENSCSAVG00000004304	-	56	34.605	ENSCSAVG00000000522	-	82	34.605
ENSCSAVG00000004304	-	56	31.510	ENSCSAVG00000003375	-	67	30.548
ENSCSAVG00000004304	-	57	33.244	ENSCSAVG00000003835	-	88	33.065
ENSCSAVG00000004304	-	56	32.303	ENSCSAVG00000004895	-	66	32.418
ENSCSAVG00000004304	-	50	37.318	ENSCSAVG00000004158	-	70	37.318
ENSCSAVG00000004304	-	50	35.347	ENSCSAVG00000006949	-	63	35.347
ENSCSAVG00000004304	-	56	39.489	ENSCSAVG00000002180	-	90	39.489
ENSCSAVG00000004304	-	72	37.554	ENSCSAVG00000002353	-	84	38.889
ENSCSAVG00000004304	-	55	30.747	ENSCSAVG00000002162	-	82	31.044
ENSCSAVG00000004304	-	52	32.240	ENSCSAVG00000004227	-	69	32.514
ENSCSAVG00000004304	-	67	31.674	ENSCSAVG00000003023	-	73	31.808
ENSCSAVG00000004304	-	55	31.204	ENSCSAVG00000001436	-	59	30.861
ENSCSAVG00000004304	-	56	33.708	ENSCSAVG00000008916	-	100	31.844
ENSCSAVG00000004304	-	60	32.982	ENSCSAVG00000009920	-	98	33.156
ENSCSAVG00000004304	-	61	33.079	ENSCSAVG00000000630	-	98	32.558

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000004304	-	98	49.267	ENSG00000152670	DDX4	90	54.244	Homo_sapiens
ENSCSAVG00000004304	-	55	60.231	ENSAPOG00000021394	ddx4	93	58.445	Acanthochromis_polyacanthus
ENSCSAVG00000004304	-	73	61.111	ENSAMEG00000013960	DDX4	72	54.662	Ailuropoda_melanoleuca
ENSCSAVG00000004304	-	56	64.689	ENSACIG00000017623	ddx4	88	64.689	Amphilophus_citrinellus
ENSCSAVG00000004304	-	56	65.730	ENSAPEG00000008490	ddx4	89	65.730	Amphiprion_percula
ENSCSAVG00000004304	-	60	63.089	ENSATEG00000011704	ddx4	94	63.904	Anabas_testudineus
ENSCSAVG00000004304	-	67	60.757	ENSAPLG00000011662	DDX4	96	60.514	Anas_platyrhynchos
ENSCSAVG00000004304	-	72	61.099	ENSACAG00000014951	DDX4	64	60.762	Anolis_carolinensis
ENSCSAVG00000004304	-	98	49.269	ENSANAG00000029060	DDX4	76	54.296	Aotus_nancymaae
ENSCSAVG00000004304	-	73	62.069	ENSACLG00000007422	ddx4	77	60.334	Astatotilapia_calliptera
ENSCSAVG00000004304	-	73	62.821	ENSAMXG00000010288	ddx4	76	60.120	Astyanax_mexicanus
ENSCSAVG00000004304	-	75	59.834	ENSBTAG00000008871	DDX4	80	54.078	Bos_taurus
ENSCSAVG00000004304	-	92	39.206	WBGene00001599	glh-2	79	39.213	Caenorhabditis_elegans
ENSCSAVG00000004304	-	92	38.679	WBGene00001598	glh-1	85	39.187	Caenorhabditis_elegans
ENSCSAVG00000004304	-	81	38.068	WBGene00001600	glh-3	71	38.402	Caenorhabditis_elegans
ENSCSAVG00000004304	-	75	59.420	ENSCJAG00000001951	DDX4	85	56.893	Callithrix_jacchus
ENSCSAVG00000004304	-	71	62.252	ENSCAFG00000006875	DDX4	68	57.447	Canis_familiaris
ENSCSAVG00000004304	-	73	61.359	ENSCAFG00020024295	DDX4	75	57.447	Canis_lupus_dingo
ENSCSAVG00000004304	-	73	61.028	ENSCHIG00000015567	DDX4	74	54.380	Capra_hircus
ENSCSAVG00000004304	-	89	50.949	ENSTSYG00000011848	DDX4	79	60.841	Carlito_syrichta
ENSCSAVG00000004304	-	55	52.874	ENSCPOG00000004327	DDX4	51	52.586	Cavia_porcellus
ENSCSAVG00000004304	-	98	49.206	ENSCCAG00000028725	DDX4	76	54.762	Cebus_capucinus
ENSCSAVG00000004304	-	98	49.413	ENSCATG00000044303	DDX4	91	54.128	Cercocebus_atys
ENSCSAVG00000004304	-	70	62.045	ENSCLAG00000005386	DDX4	69	58.592	Chinchilla_lanigera
ENSCSAVG00000004304	-	73	60.515	ENSCSAG00000016336	DDX4	68	55.429	Chlorocebus_sabaeus
ENSCSAVG00000004304	-	74	53.291	ENSCHOG00000000200	DDX4	72	49.451	Choloepus_hoffmanni
ENSCSAVG00000004304	-	76	59.751	ENSCPBG00000026547	DDX4	89	55.597	Chrysemys_picta_bellii
ENSCSAVG00000004304	-	99	77.296	ENSCING00000001412	-	94	91.667	Ciona_intestinalis
ENSCSAVG00000004304	-	94	45.614	ENSCANG00000003129	DDX4	85	49.808	Colobus_angolensis_palliatus
ENSCSAVG00000004304	-	94	50.452	ENSCGRG00001014961	Ddx4	65	60.087	Cricetulus_griseus_chok1gshd
ENSCSAVG00000004304	-	94	50.452	ENSCGRG00000001251	Ddx4	65	60.087	Cricetulus_griseus_crigri
ENSCSAVG00000004304	-	73	58.710	ENSCSEG00000006039	ddx4	73	53.668	Cynoglossus_semilaevis
ENSCSAVG00000004304	-	76	60.625	ENSDARG00000014373	ddx4	71	59.836	Danio_rerio
ENSCSAVG00000004304	-	70	60.181	ENSDNOG00000011658	DDX4	69	55.020	Dasypus_novemcinctus
ENSCSAVG00000004304	-	73	61.242	ENSDORG00000012201	Ddx4	75	55.027	Dipodomys_ordii
ENSCSAVG00000004304	-	72	53.712	FBgn0283442	vas	66	53.795	Drosophila_melanogaster
ENSCSAVG00000004304	-	63	53.771	ENSEBUG00000003290	-	81	54.015	Eptatretus_burgeri
ENSCSAVG00000004304	-	100	47.214	ENSEASG00005012143	DDX4	77	57.670	Equus_asinus_asinus
ENSCSAVG00000004304	-	98	49.054	ENSECAG00000023616	DDX4	82	55.920	Equus_caballus
ENSCSAVG00000004304	-	60	62.533	ENSEEUG00000012462	DDX4	52	62.533	Erinaceus_europaeus
ENSCSAVG00000004304	-	72	62.363	ENSELUG00000017328	ddx4	77	60.000	Esox_lucius
ENSCSAVG00000004304	-	98	49.501	ENSFCAG00000012560	DDX4	89	55.351	Felis_catus
ENSCSAVG00000004304	-	68	61.574	ENSFALG00000010910	DDX4	64	57.652	Ficedula_albicollis
ENSCSAVG00000004304	-	77	58.163	ENSFDAG00000003703	DDX4	69	58.163	Fukomys_damarensis
ENSCSAVG00000004304	-	76	60.575	ENSFHEG00000019935	ddx4	75	58.012	Fundulus_heteroclitus
ENSCSAVG00000004304	-	71	57.428	ENSGALG00000014713	DDX4	67	57.079	Gallus_gallus
ENSCSAVG00000004304	-	74	60.600	ENSGAFG00000016509	ddx4	70	61.161	Gambusia_affinis
ENSCSAVG00000004304	-	75	60.752	ENSGACG00000015323	ddx4	98	58.600	Gasterosteus_aculeatus
ENSCSAVG00000004304	-	98	49.488	ENSGGOG00000002439	DDX4	90	54.244	Gorilla_gorilla
ENSCSAVG00000004304	-	73	62.284	ENSHBUG00000001897	ddx4	75	62.500	Haplochromis_burtoni
ENSCSAVG00000004304	-	72	56.140	ENSHGLG00000003594	DDX4	59	56.582	Heterocephalus_glaber_female
ENSCSAVG00000004304	-	59	44.089	ENSHGLG00100001008	-	57	61.739	Heterocephalus_glaber_male
ENSCSAVG00000004304	-	73	59.743	ENSHCOG00000018337	ddx4	75	60.626	Hippocampus_comes
ENSCSAVG00000004304	-	70	62.247	ENSIPUG00000001845	ddx4	73	62.247	Ictalurus_punctatus
ENSCSAVG00000004304	-	79	58.416	ENSSTOG00000021044	DDX4	75	54.596	Ictidomys_tridecemlineatus
ENSCSAVG00000004304	-	100	48.038	ENSJJAG00000015867	Ddx4	75	54.779	Jaculus_jaculus
ENSCSAVG00000004304	-	73	60.851	ENSKMAG00000012439	ddx4	90	52.429	Kryptolebias_marmoratus
ENSCSAVG00000004304	-	76	60.543	ENSLBEG00000019504	ddx4	69	62.332	Labrus_bergylta
ENSCSAVG00000004304	-	72	63.077	ENSLOCG00000010887	ddx4	93	62.806	Lepisosteus_oculatus
ENSCSAVG00000004304	-	70	63.182	ENSLAFG00000005900	DDX4	75	55.678	Loxodonta_africana
ENSCSAVG00000004304	-	98	49.413	ENSMFAG00000040186	DDX4	91	54.128	Macaca_fascicularis
ENSCSAVG00000004304	-	98	49.413	ENSMMUG00000017386	DDX4	91	54.128	Macaca_mulatta
ENSCSAVG00000004304	-	98	49.413	ENSMNEG00000033343	DDX4	91	54.128	Macaca_nemestrina
ENSCSAVG00000004304	-	89	47.883	ENSMLEG00000038233	DDX4	89	52.008	Mandrillus_leucophaeus
ENSCSAVG00000004304	-	58	62.973	ENSMAMG00000003574	ddx4	93	62.973	Mastacembelus_armatus
ENSCSAVG00000004304	-	73	62.069	ENSMZEG00005019116	ddx4	74	63.426	Maylandia_zebra
ENSCSAVG00000004304	-	69	57.011	ENSMAUG00000019873	Ddx4	62	56.643	Mesocricetus_auratus
ENSCSAVG00000004304	-	75	43.738	ENSMICG00000028132	-	81	43.040	Microcebus_murinus
ENSCSAVG00000004304	-	78	59.519	ENSMICG00000008994	-	89	55.659	Microcebus_murinus
ENSCSAVG00000004304	-	73	60.691	ENSMOCG00000013250	Ddx4	64	60.532	Microtus_ochrogaster
ENSCSAVG00000004304	-	73	61.905	ENSMMOG00000004689	ddx4	81	61.758	Mola_mola
ENSCSAVG00000004304	-	74	60.684	ENSMODG00000019511	DDX4	66	57.430	Monodelphis_domestica
ENSCSAVG00000004304	-	73	60.907	MGP_CAROLIEiJ_G0018893	Ddx4	64	61.161	Mus_caroli
ENSCSAVG00000004304	-	73	61.339	ENSMUSG00000021758	Ddx4	64	61.607	Mus_musculus
ENSCSAVG00000004304	-	73	61.123	MGP_PahariEiJ_G0015964	Ddx4	64	61.384	Mus_pahari
ENSCSAVG00000004304	-	73	61.123	MGP_SPRETEiJ_G0019772	Ddx4	64	61.384	Mus_spretus
ENSCSAVG00000004304	-	73	60.684	ENSMPUG00000007596	DDX4	72	54.197	Mustela_putorius_furo
ENSCSAVG00000004304	-	74	58.985	ENSMLUG00000001189	DDX4	65	56.855	Myotis_lucifugus
ENSCSAVG00000004304	-	97	49.705	ENSNGAG00000013259	Ddx4	69	56.713	Nannospalax_galili
ENSCSAVG00000004304	-	75	59.119	ENSNBRG00000014442	ddx4	95	56.995	Neolamprologus_brichardi
ENSCSAVG00000004304	-	100	49.429	ENSNLEG00000001662	DDX4	90	54.797	Nomascus_leucogenys
ENSCSAVG00000004304	-	52	41.463	ENSOPRG00000008071	DDX4	58	40.187	Ochotona_princeps
ENSCSAVG00000004304	-	100	46.821	ENSODEG00000003839	-	82	54.029	Octodon_degus
ENSCSAVG00000004304	-	100	47.368	ENSODEG00000016951	-	80	54.054	Octodon_degus
ENSCSAVG00000004304	-	67	64.169	ENSONIG00000012063	ddx4	99	58.149	Oreochromis_niloticus
ENSCSAVG00000004304	-	58	59.786	ENSOANG00000004888	-	94	59.786	Ornithorhynchus_anatinus
ENSCSAVG00000004304	-	73	60.385	ENSOCUG00000008597	DDX4	72	53.748	Oryctolagus_cuniculus
ENSCSAVG00000004304	-	79	58.020	ENSORLG00000020672	ddx4	87	53.780	Oryzias_latipes
ENSCSAVG00000004304	-	74	60.251	ENSORLG00020014206	ddx4	88	53.516	Oryzias_latipes_hni
ENSCSAVG00000004304	-	74	60.669	ENSORLG00015016600	ddx4	87	52.971	Oryzias_latipes_hsok
ENSCSAVG00000004304	-	73	61.720	ENSOMEG00000010651	ddx4	80	59.959	Oryzias_melastigma
ENSCSAVG00000004304	-	73	61.028	ENSOGAG00000007588	DDX4	72	54.845	Otolemur_garnettii
ENSCSAVG00000004304	-	73	61.028	ENSOARG00000007644	DDX4	72	54.745	Ovis_aries
ENSCSAVG00000004304	-	98	49.267	ENSPPAG00000033915	DDX4	90	54.244	Pan_paniscus
ENSCSAVG00000004304	-	98	49.215	ENSPPRG00000011417	DDX4	76	53.931	Panthera_pardus
ENSCSAVG00000004304	-	98	48.787	ENSPTIG00000007748	DDX4	87	52.030	Panthera_tigris_altaica
ENSCSAVG00000004304	-	98	49.267	ENSPTRG00000016884	DDX4	90	54.244	Pan_troglodytes
ENSCSAVG00000004304	-	98	49.413	ENSPANG00000010945	DDX4	91	54.862	Papio_anubis
ENSCSAVG00000004304	-	75	58.491	ENSPSIG00000017179	DDX4	76	58.491	Pelodiscus_sinensis
ENSCSAVG00000004304	-	58	58.919	ENSPMGG00000015642	ddx4	93	59.459	Periophthalmus_magnuspinnatus
ENSCSAVG00000004304	-	88	53.247	ENSPEMG00000010086	Ddx4	64	61.197	Peromyscus_maniculatus_bairdii
ENSCSAVG00000004304	-	74	60.256	ENSPCIG00000024758	DDX4	72	57.143	Phascolarctos_cinereus
ENSCSAVG00000004304	-	73	61.039	ENSPFOG00000018842	ddx4	70	61.384	Poecilia_formosa
ENSCSAVG00000004304	-	73	61.255	ENSPLAG00000020726	ddx4	70	61.607	Poecilia_latipinna
ENSCSAVG00000004304	-	73	61.039	ENSPMEG00000002976	ddx4	72	61.384	Poecilia_mexicana
ENSCSAVG00000004304	-	73	61.255	ENSPREG00000017840	ddx4	72	61.607	Poecilia_reticulata
ENSCSAVG00000004304	-	98	48.498	ENSPPYG00000015472	DDX4	68	55.962	Pongo_abelii
ENSCSAVG00000004304	-	74	54.102	ENSPCAG00000002675	DDX4	57	63.145	Procavia_capensis
ENSCSAVG00000004304	-	70	62.723	ENSPVAG00000002448	DDX4	71	56.538	Pteropus_vampyrus
ENSCSAVG00000004304	-	72	62.637	ENSPNYG00000022212	ddx4	74	63.657	Pundamilia_nyererei
ENSCSAVG00000004304	-	66	64.439	ENSPNAG00000003686	ddx4	72	61.707	Pygocentrus_nattereri
ENSCSAVG00000004304	-	77	59.350	ENSRNOG00000026686	Ddx4	64	61.283	Rattus_norvegicus
ENSCSAVG00000004304	-	98	49.120	ENSRBIG00000028795	DDX4	91	53.761	Rhinopithecus_bieti
ENSCSAVG00000004304	-	98	49.046	ENSRROG00000045392	DDX4	84	58.385	Rhinopithecus_roxellana
ENSCSAVG00000004304	-	73	50.317	YPL119C	DBP1	72	52.222	Saccharomyces_cerevisiae
ENSCSAVG00000004304	-	93	50.667	ENSSBOG00000035231	DDX4	70	58.678	Saimiri_boliviensis_boliviensis
ENSCSAVG00000004304	-	74	60.897	ENSSHAG00000009132	DDX4	67	57.631	Sarcophilus_harrisii
ENSCSAVG00000004304	-	70	62.022	ENSSFOG00015006531	ddx4	67	62.963	Scleropages_formosus
ENSCSAVG00000004304	-	74	59.957	ENSSMAG00000009800	ddx4	82	54.869	Scophthalmus_maximus
ENSCSAVG00000004304	-	70	63.575	ENSSDUG00000022015	ddx4	68	63.889	Seriola_dumerili
ENSCSAVG00000004304	-	59	64.075	ENSSLDG00000015312	ddx4	93	64.324	Seriola_lalandi_dorsalis
ENSCSAVG00000004304	-	66	60.047	ENSSARG00000004206	DDX4	53	63.021	Sorex_araneus
ENSCSAVG00000004304	-	73	59.740	ENSSPUG00000007260	DDX4	78	59.341	Sphenodon_punctatus
ENSCSAVG00000004304	-	61	61.917	ENSSPAG00000014307	ddx4	100	58.034	Stegastes_partitus
ENSCSAVG00000004304	-	75	60.206	ENSSSCG00000016913	DDX4	72	54.727	Sus_scrofa
ENSCSAVG00000004304	-	68	60.185	ENSTGUG00000002548	DDX4	97	59.765	Taeniopygia_guttata
ENSCSAVG00000004304	-	72	57.363	ENSTNIG00000014474	ddx4	75	58.275	Tetraodon_nigroviridis
ENSCSAVG00000004304	-	61	63.964	ENSTBEG00000003569	DDX4	54	60.185	Tupaia_belangeri
ENSCSAVG00000004304	-	73	60.814	ENSTTRG00000009316	DDX4	62	61.726	Tursiops_truncatus
ENSCSAVG00000004304	-	76	59.917	ENSUAMG00000023028	DDX4	75	57.087	Ursus_americanus
ENSCSAVG00000004304	-	76	59.917	ENSUMAG00000009291	DDX4	75	57.087	Ursus_maritimus
ENSCSAVG00000004304	-	77	59.109	ENSVPAG00000009491	DDX4	75	54.093	Vicugna_pacos
ENSCSAVG00000004304	-	97	50.291	ENSVVUG00000021369	DDX4	71	57.447	Vulpes_vulpes
ENSCSAVG00000004304	-	90	49.282	ENSXETG00000030832	DDX4	78	55.800	Xenopus_tropicalis
ENSCSAVG00000004304	-	73	61.472	ENSXMAG00000009677	ddx4	73	61.830	Xiphophorus_maculatus