EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000004326 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 22096 bases
Position: chrreftig_0:224048-246143
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000007231	RIO1	PF01163.22	6.1e-05	1	1
ENSCSAVP00000007239	RIO1	PF01163.22	6.2e-05	1	1
ENSCSAVP00000007236	RIO1	PF01163.22	6.9e-05	1	1
ENSCSAVP00000007234	RIO1	PF01163.22	6.9e-05	1	1
ENSCSAVP00000007230	RIO1	PF01163.22	7.2e-05	1	1
ENSCSAVP00000007235	RIO1	PF01163.22	7.6e-05	1	1
ENSCSAVP00000007232	RIO1	PF01163.22	7.9e-05	1	1
ENSCSAVP00000007233	RIO1	PF01163.22	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000007324	-	2810	-	ENSCSAVP00000007230	708 (aa)	-	H2YPH2
ENSCSAVT00000007325	-	2817	-	ENSCSAVP00000007231	716 (aa)	-	H2YPH3
ENSCSAVT00000007326	-	3013	-	ENSCSAVP00000007232	782 (aa)	-	H2YPH4
ENSCSAVT00000007327	-	2797	-	ENSCSAVP00000007233	710 (aa)	-	H2YPH5
ENSCSAVT00000007333	-	2037	-	ENSCSAVP00000007239	678 (aa)	-	H2YPI1
ENSCSAVT00000007332	-	2058	-	ENSCSAVP00000007238	685 (aa)	-	H2YPI0
ENSCSAVT00000007331	-	2524	-	ENSCSAVP00000007237	794 (aa)	-	H2YPH9
ENSCSAVT00000007330	-	2337	-	ENSCSAVP00000007236	716 (aa)	-	H2YPH8
ENSCSAVT00000007328	-	2794	-	ENSCSAVP00000007234	719 (aa)	-	H2YPH6
ENSCSAVT00000007329	-	2432	-	ENSCSAVP00000007235	746 (aa)	-	H2YPH7

Gene Model

Click here to download ENSCSAVG00000004326's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004326's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000004326	-	90	85.075	ENSG00000075413	MARK3	93	85.714	Homo_sapiens
ENSCSAVG00000004326	-	80	78.328	ENSACIG00000023826	mark3a	77	76.786	Amphilophus_citrinellus
ENSCSAVG00000004326	-	100	57.219	ENSAPEG00000003620	mark3a	94	58.392	Amphiprion_percula
ENSCSAVG00000004326	-	99	59.000	ENSATEG00000017350	mark3a	95	59.072	Anabas_testudineus
ENSCSAVG00000004326	-	100	57.514	ENSATEG00000006494	MARK3	77	78.750	Anabas_testudineus
ENSCSAVG00000004326	-	80	78.328	ENSACLG00000010884	mark3a	94	58.543	Astatotilapia_calliptera
ENSCSAVG00000004326	-	100	57.479	ENSAMXG00000001870	mark3a	79	74.000	Astyanax_mexicanus
ENSCSAVG00000004326	-	100	59.972	ENSAMXG00000001388	mark3b	90	62.554	Astyanax_mexicanus
ENSCSAVG00000004326	-	98	78.019	ENSCSEG00000013207	mark3a	94	65.632	Cynoglossus_semilaevis
ENSCSAVG00000004326	-	99	58.251	ENSCVAG00000018949	mark3a	95	57.655	Cyprinodon_variegatus
ENSCSAVG00000004326	-	100	57.389	ENSDARG00000019345	mark3a	76	74.850	Danio_rerio
ENSCSAVG00000004326	-	100	55.404	ENSEBUG00000014231	-	97	55.378	Eptatretus_burgeri
ENSCSAVG00000004326	-	99	59.207	ENSFHEG00000010724	mark3a	94	59.123	Fundulus_heteroclitus
ENSCSAVG00000004326	-	99	59.084	ENSGAFG00000011875	mark3a	94	61.489	Gambusia_affinis
ENSCSAVG00000004326	-	85	72.508	ENSGACG00000004742	mark3a	94	56.454	Gasterosteus_aculeatus
ENSCSAVG00000004326	-	79	73.913	ENSHBUG00000023278	mark3a	87	72.537	Haplochromis_burtoni
ENSCSAVG00000004326	-	100	59.634	ENSIPUG00000018616	mark3b	94	59.637	Ictalurus_punctatus
ENSCSAVG00000004326	-	100	56.485	ENSIPUG00000003398	mark3	79	70.924	Ictalurus_punctatus
ENSCSAVG00000004326	-	95	75.625	ENSJJAG00000022266	Mark3	83	74.184	Jaculus_jaculus
ENSCSAVG00000004326	-	89	76.807	ENSKMAG00000014622	MARK3	94	59.259	Kryptolebias_marmoratus
ENSCSAVG00000004326	-	99	60.576	ENSKMAG00000017897	mark3a	94	63.216	Kryptolebias_marmoratus
ENSCSAVG00000004326	-	87	75.740	ENSLBEG00000004943	mark3a	86	75.219	Labrus_bergylta
ENSCSAVG00000004326	-	100	58.872	ENSLOCG00000009889	mark3a	93	63.383	Lepisosteus_oculatus
ENSCSAVG00000004326	-	99	58.333	ENSMAMG00000000065	mark3a	96	56.711	Mastacembelus_armatus
ENSCSAVG00000004326	-	100	60.838	ENSMAMG00000002003	MARK3	92	65.604	Mastacembelus_armatus
ENSCSAVG00000004326	-	80	78.328	ENSMZEG00005001972	mark3a	94	57.799	Maylandia_zebra
ENSCSAVG00000004326	-	99	57.020	ENSMMOG00000014764	mark3a	94	57.143	Mola_mola
ENSCSAVG00000004326	-	81	76.000	ENSNBRG00000003333	-	85	76.000	Neolamprologus_brichardi
ENSCSAVG00000004326	-	100	59.072	ENSONIG00000019014	-	94	58.790	Oreochromis_niloticus
ENSCSAVG00000004326	-	95	78.328	ENSONIG00000012410	mark3a	94	55.455	Oreochromis_niloticus
ENSCSAVG00000004326	-	100	59.722	ENSPKIG00000019336	mark3b	93	59.669	Paramormyrops_kingsleyae
ENSCSAVG00000004326	-	99	57.368	ENSPMGG00000011367	mark3a	93	59.465	Periophthalmus_magnuspinnatus
ENSCSAVG00000004326	-	65	61.111	ENSPFOG00000019488	MARK3	87	70.000	Poecilia_formosa
ENSCSAVG00000004326	-	99	59.040	ENSPLAG00000013552	mark3a	77	76.786	Poecilia_latipinna
ENSCSAVG00000004326	-	95	78.019	ENSPREG00000005436	mark3a	85	76.488	Poecilia_reticulata
ENSCSAVG00000004326	-	99	58.392	ENSPNYG00000017025	mark3a	94	58.543	Pundamilia_nyererei
ENSCSAVG00000004326	-	100	60.196	ENSPNAG00000018462	mark3b	94	60.083	Pygocentrus_nattereri
ENSCSAVG00000004326	-	100	57.872	ENSPNAG00000029687	mark3a	93	60.888	Pygocentrus_nattereri
ENSCSAVG00000004326	-	100	60.141	ENSSFOG00015014033	mark3b	92	63.715	Scleropages_formosus
ENSCSAVG00000004326	-	100	59.222	ENSSMAG00000010713	MARK3	94	59.254	Scophthalmus_maximus
ENSCSAVG00000004326	-	95	76.667	ENSSMAG00000005737	mark3a	84	75.219	Scophthalmus_maximus
ENSCSAVG00000004326	-	99	59.155	ENSSDUG00000004553	mark3a	98	56.860	Seriola_dumerili
ENSCSAVG00000004326	-	82	77.644	ENSTRUG00000006908	mark3a	94	57.687	Takifugu_rubripes
ENSCSAVG00000004326	-	99	57.850	ENSTNIG00000012393	mark3a	94	58.368	Tetraodon_nigroviridis
ENSCSAVG00000004326	-	95	80.625	ENSXETG00000012767	mark3	87	73.333	Xenopus_tropicalis
ENSCSAVG00000004326	-	82	54.424	ENSXCOG00000004394	MARK3	94	63.596	Xiphophorus_couchianus
ENSCSAVG00000004326	-	84	77.676	ENSXMAG00000006647	MARK3	91	65.566	Xiphophorus_maculatus
ENSCSAVG00000004326	-	70	77.341	ENSXMAG00000014822	MARK3	73	76.786	Xiphophorus_maculatus