EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCSAVG00000004448 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
-
Gene Type
protein_coding
Species
Ciona_savignyi
Status
putative
Strand
Minus strand
Length
40339 bases
Position
chrreftig_134:368386-408724
Accession
-
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSAVP00000007445ResIIIPF04851.152.8e-0711
ENSCSAVP00000007442ResIIIPF04851.159.8e-0711
ENSCSAVP00000007444ResIIIPF04851.151.3e-0611
ENSCSAVP00000007440ResIIIPF04851.151.9e-0611
ENSCSAVP00000007441ResIIIPF04851.154e-0611
ENSCSAVP00000007439ResIIIPF04851.156.6e-0611
ENSCSAVP00000007443ResIIIPF04851.157e-0611
ENSCSAVP00000007438ResIIIPF04851.157.8e-0611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSAVT00000007539-5171-ENSCSAVP000000074421676 (aa)-H2YQ34
ENSCSAVT00000007538-5392-ENSCSAVP000000074411792 (aa)-H2YQ33
ENSCSAVT00000007535-5834-ENSCSAVP000000074381800 (aa)-H2YQ30
ENSCSAVT00000007537-5365-ENSCSAVP000000074401759 (aa)-H2YQ32
ENSCSAVT00000007536-5312-ENSCSAVP000000074391605 (aa)-H2YQ31
ENSCSAVT00000007540-4995-ENSCSAVP000000074431665 (aa)-H2YQ35
ENSCSAVT00000007541-5294-ENSCSAVP000000074441758 (aa)-H2YQ36
ENSCSAVT00000007542-2853-ENSCSAVP00000007445951 (aa)-H2YQ37
Gene Model
Click here to download ENSCSAVG00000004448's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004448's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCSAVG00000004448-5741.133ENSCSAVG00000004620-6842.633
ENSCSAVG00000004448-5140.476ENSCSAVG00000007529-8440.476
ENSCSAVG00000004448-7939.846ENSCSAVG00000007580-8037.286
ENSCSAVG00000004448-7237.657ENSCSAVG00000005559-6238.802
ENSCSAVG00000004448-6441.214ENSCSAVG00000005900-9343.002
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSAVG00000004448-9961.783ENSG00000111642CHD49961.107Homo_sapiens
ENSCSAVG00000004448-8278.621ENSAPOG00000020502-8278.621Acanthochromis_polyacanthus
ENSCSAVG00000004448-9374.519ENSAPOG00000008935chd4a9854.085Acanthochromis_polyacanthus
ENSCSAVG00000004448-9961.359ENSAMEG00000014179-9254.194Ailuropoda_melanoleuca
ENSCSAVG00000004448-9775.862ENSACIG00000019310chd4a9375.122Amphilophus_citrinellus
ENSCSAVG00000004448-9959.714ENSACIG00000012387-8771.364Amphilophus_citrinellus
ENSCSAVG00000004448-9956.760ENSAOCG00000016412-9259.140Amphiprion_ocellaris
ENSCSAVG00000004448-9960.020ENSAOCG00000000507-8671.364Amphiprion_ocellaris
ENSCSAVG00000004448-8178.621ENSAPEG00000020306-8478.621Amphiprion_percula
ENSCSAVG00000004448-9772.146ENSAPEG00000001757chd4a9256.818Amphiprion_percula
ENSCSAVG00000004448-9871.364ENSAPEG00000005957-9556.489Amphiprion_percula
ENSCSAVG00000004448-9958.836ENSATEG00000021141-9651.099Anabas_testudineus
ENSCSAVG00000004448-9376.238ENSATEG00000016428chd4a9075.000Anabas_testudineus
ENSCSAVG00000004448-9960.284ENSATEG00000000976-7978.621Anabas_testudineus
ENSCSAVG00000004448-9961.475ENSAPLG00000014146-9055.100Anas_platyrhynchos
ENSCSAVG00000004448-9960.874ENSACAG00000006231-9255.117Anolis_carolinensis
ENSCSAVG00000004448-9961.359ENSANAG00000035685-9354.925Aotus_nancymaae
ENSCSAVG00000004448-9959.179ENSACLG00000015837chd4a9553.064Astatotilapia_calliptera
ENSCSAVG00000004448-9959.448ENSACLG00000024468-9553.964Astatotilapia_calliptera
ENSCSAVG00000004448-9961.241ENSAMXG00000019969chd4a9454.633Astyanax_mexicanus
ENSCSAVG00000004448-9960.432ENSAMXG00000010614-9654.190Astyanax_mexicanus
ENSCSAVG00000004448-9961.783ENSBTAG00000014734CHD49254.869Bos_taurus
ENSCSAVG00000004448-9961.359ENSCJAG00000008114-9254.839Callithrix_jacchus
ENSCSAVG00000004448-9961.783ENSCAFG00000014929CHD49254.981Canis_familiaris
ENSCSAVG00000004448-9961.783ENSCAFG00020002892-9254.545Canis_lupus_dingo
ENSCSAVG00000004448-9961.783ENSCHIG00000020766-9354.500Capra_hircus
ENSCSAVG00000004448-9961.885ENSTSYG00000006069-9254.020Carlito_syrichta
ENSCSAVG00000004448-9961.783ENSCPOG00000008504-9353.931Cavia_porcellus
ENSCSAVG00000004448-9961.359ENSCCAG00000009686-9354.925Cebus_capucinus
ENSCSAVG00000004448-9961.783ENSCATG00000006345-9354.925Cercocebus_atys
ENSCSAVG00000004448-9961.783ENSCLAG00000012244-9254.718Chinchilla_lanigera
ENSCSAVG00000004448-9961.783ENSCSAG00000010429-9254.864Chlorocebus_sabaeus
ENSCSAVG00000004448-8082.569ENSCHOG00000000277-7782.569Choloepus_hoffmanni
ENSCSAVG00000004448-9961.436ENSCPBG00000027716-8854.952Chrysemys_picta_bellii
ENSCSAVG00000004448-8082.727ENSCANG00000035317-9272.308Colobus_angolensis_palliatus
ENSCSAVG00000004448-9961.523ENSCGRG00001020662Chd49254.333Cricetulus_griseus_chok1gshd
ENSCSAVG00000004448-9961.783ENSCGRG00000015920Chd49354.420Cricetulus_griseus_crigri
ENSCSAVG00000004448-9376.238ENSCSEG00000017173chd4a8874.757Cynoglossus_semilaevis
ENSCSAVG00000004448-9959.169ENSCSEG00000019943-8569.677Cynoglossus_semilaevis
ENSCSAVG00000004448-9959.533ENSCSEG00000018096-9353.764Cynoglossus_semilaevis
ENSCSAVG00000004448-9376.733ENSCVAG00000004940chd4a8975.610Cyprinodon_variegatus
ENSCSAVG00000004448-9960.366ENSCVAG00000016412-9552.916Cyprinodon_variegatus
ENSCSAVG00000004448-9959.305ENSCVAG00000001128-9654.592Cyprinodon_variegatus
ENSCSAVG00000004448-9373.239ENSDARG00000063535chd4a8773.239Danio_rerio
ENSCSAVG00000004448-9961.783ENSDNOG00000001134-9254.672Dasypus_novemcinctus
ENSCSAVG00000004448-9961.359ENSDORG00000001847Chd49154.464Dipodomys_ordii
ENSCSAVG00000004448-9959.490ENSEBUG00000012670chd4a9254.488Eptatretus_burgeri
ENSCSAVG00000004448-9961.783ENSEASG00005016150-9254.925Equus_asinus_asinus
ENSCSAVG00000004448-9961.783ENSECAG00000022005CHD49254.925Equus_caballus
ENSCSAVG00000004448-9071.292ENSELUG00000018086-9653.694Esox_lucius
ENSCSAVG00000004448-9175.122ENSELUG00000021276chd4a8874.757Esox_lucius
ENSCSAVG00000004448-9961.783ENSFCAG00000006877-9255.354Felis_catus
ENSCSAVG00000004448-9961.538ENSFALG00000004785-8755.540Ficedula_albicollis
ENSCSAVG00000004448-9958.812ENSFDAG00000020219-9253.186Fukomys_damarensis
ENSCSAVG00000004448-8478.621ENSFHEG00000003253-9178.365Fundulus_heteroclitus
ENSCSAVG00000004448-9961.459ENSFHEG00000002013chd4a9553.127Fundulus_heteroclitus
ENSCSAVG00000004448-9959.305ENSFHEG00000012736-8672.093Fundulus_heteroclitus
ENSCSAVG00000004448-7276.210ENSGMOG00000003394-7576.210Gadus_morhua
ENSCSAVG00000004448-9555.615ENSGMOG00000017923-6673.913Gadus_morhua
ENSCSAVG00000004448-8861.137ENSGMOG00000015722chd4a9957.474Gadus_morhua
ENSCSAVG00000004448-8163.613ENSGALG00000013565-9454.695Gallus_gallus
ENSCSAVG00000004448-9765.854ENSGAFG00000002778chd4a9351.676Gambusia_affinis
ENSCSAVG00000004448-8874.757ENSGAFG00000014337-9572.430Gambusia_affinis
ENSCSAVG00000004448-9473.206ENSGACG00000018705chd4a9752.882Gasterosteus_aculeatus
ENSCSAVG00000004448-8857.895ENSGACG00000010099-9953.166Gasterosteus_aculeatus
ENSCSAVG00000004448-9961.333ENSGAGG00000001416-8954.841Gopherus_agassizii
ENSCSAVG00000004448-9961.783ENSGGOG00000001930CHD49354.981Gorilla_gorilla
ENSCSAVG00000004448-9959.448ENSHBUG00000016000-9553.959Haplochromis_burtoni
ENSCSAVG00000004448-9076.238ENSHBUG00000019146chd4a8859.156Haplochromis_burtoni
ENSCSAVG00000004448-9961.359ENSHGLG00000003093-9254.724Heterocephalus_glaber_female
ENSCSAVG00000004448-9961.359ENSHGLG00100007450-9254.616Heterocephalus_glaber_male
ENSCSAVG00000004448-9958.788ENSHCOG00000014308-8852.828Hippocampus_comes
ENSCSAVG00000004448-9960.021ENSHCOG00000017525-9470.760Hippocampus_comes
ENSCSAVG00000004448-9962.051ENSIPUG00000005694chd48675.122Ictalurus_punctatus
ENSCSAVG00000004448-9961.783ENSSTOG00000007601-9254.779Ictidomys_tridecemlineatus
ENSCSAVG00000004448-9961.460ENSJJAG00000012394Chd49353.846Jaculus_jaculus
ENSCSAVG00000004448-9958.896ENSKMAG00000007932-8662.963Kryptolebias_marmoratus
ENSCSAVG00000004448-9961.744ENSKMAG00000019286chd4a9554.009Kryptolebias_marmoratus
ENSCSAVG00000004448-8478.365ENSKMAG00000017827-8978.365Kryptolebias_marmoratus
ENSCSAVG00000004448-9958.872ENSLBEG00000026652-9457.464Labrus_bergylta
ENSCSAVG00000004448-9071.041ENSLBEG00000012434CHD48571.364Labrus_bergylta
ENSCSAVG00000004448-9961.060ENSLOCG00000007438chd4a9153.794Lepisosteus_oculatus
ENSCSAVG00000004448-9960.507ENSLAFG00000022842-9253.442Loxodonta_africana
ENSCSAVG00000004448-9961.783ENSMFAG00000003188-9354.925Macaca_fascicularis
ENSCSAVG00000004448-9959.960ENSMMUG00000018685-9254.137Macaca_mulatta
ENSCSAVG00000004448-9961.783ENSMNEG00000044776-9353.556Macaca_nemestrina
ENSCSAVG00000004448-9960.918ENSMLEG00000024661-9354.029Mandrillus_leucophaeus
ENSCSAVG00000004448-9674.634ENSMAMG00000018954chd4a9254.822Mastacembelus_armatus
ENSCSAVG00000004448-8280.000ENSMAMG00000002137-8380.000Mastacembelus_armatus
ENSCSAVG00000004448-8674.757ENSMAMG00000002584-8774.163Mastacembelus_armatus
ENSCSAVG00000004448-9959.448ENSMZEG00005017761-9553.959Maylandia_zebra
ENSCSAVG00000004448-9776.238ENSMZEG00005001706chd4a9653.064Maylandia_zebra
ENSCSAVG00000004448-9961.475ENSMGAG00000014084-9254.733Meleagris_gallopavo
ENSCSAVG00000004448-9961.783ENSMICG00000006588-9354.925Microcebus_murinus
ENSCSAVG00000004448-9961.783ENSMOCG00000020624Chd49254.525Microtus_ochrogaster
ENSCSAVG00000004448-8873.793ENSMMOG00000000073chd4a9653.903Mola_mola
ENSCSAVG00000004448-9960.387ENSMMOG00000013429-8553.719Mola_mola
ENSCSAVG00000004448-9959.856ENSMMOG00000015971-8568.750Mola_mola
ENSCSAVG00000004448-9959.661ENSMODG00000018094-9957.599Monodelphis_domestica
ENSCSAVG00000004448-9959.918ENSMALG00000022494-8371.364Monopterus_albus
ENSCSAVG00000004448-9959.324ENSMALG00000005766chd4a9353.143Monopterus_albus
ENSCSAVG00000004448-9961.783ENSMUSG00000063870Chd49254.889Mus_musculus
ENSCSAVG00000004448-9961.783MGP_SPRETEiJ_G0029911Chd49254.687Mus_spretus
ENSCSAVG00000004448-9961.783ENSMPUG00000016859-9255.036Mustela_putorius_furo
ENSCSAVG00000004448-9961.744ENSMLUG00000014343-9254.647Myotis_lucifugus
ENSCSAVG00000004448-9960.406ENSNGAG00000016920Chd49254.368Nannospalax_galili
ENSCSAVG00000004448-9959.346ENSNBRG00000021576-9553.807Neolamprologus_brichardi
ENSCSAVG00000004448-9961.783ENSNLEG00000004330-8954.930Nomascus_leucogenys
ENSCSAVG00000004448-7979.646ENSMEUG00000015294-7582.569Notamacropus_eugenii
ENSCSAVG00000004448-7683.333ENSOPRG00000003477-7083.333Ochotona_princeps
ENSCSAVG00000004448-9961.783ENSODEG00000003114-9254.621Octodon_degus
ENSCSAVG00000004448-8871.041ENSONIG00000012953-8971.041Oreochromis_niloticus
ENSCSAVG00000004448-9776.238ENSONIG00000006992chd4a9353.974Oreochromis_niloticus
ENSCSAVG00000004448-9961.783ENSOCUG00000008215-9154.828Oryctolagus_cuniculus
ENSCSAVG00000004448-9379.208ENSORLG00000017190-8978.537Oryzias_latipes
ENSCSAVG00000004448-9875.610ENSORLG00000006310chd4a9153.787Oryzias_latipes
ENSCSAVG00000004448-9574.757ENSORLG00000012477-8772.093Oryzias_latipes
ENSCSAVG00000004448-9574.757ENSORLG00020004891-8372.093Oryzias_latipes_hni
ENSCSAVG00000004448-9959.919ENSORLG00020011739-8754.146Oryzias_latipes_hni
ENSCSAVG00000004448-9576.355ENSORLG00020006529chd4a9253.005Oryzias_latipes_hni
ENSCSAVG00000004448-9574.757ENSORLG00015010692-8670.323Oryzias_latipes_hsok
ENSCSAVG00000004448-8675.610ENSORLG00015019674chd4a9554.377Oryzias_latipes_hsok
ENSCSAVG00000004448-9959.590ENSOMEG00000013408-8268.750Oryzias_melastigma
ENSCSAVG00000004448-9775.610ENSOMEG00000016394chd4a8671.111Oryzias_melastigma
ENSCSAVG00000004448-7777.241ENSOMEG00000014929-8477.241Oryzias_melastigma
ENSCSAVG00000004448-9959.960ENSOGAG00000010031-9253.990Otolemur_garnettii
ENSCSAVG00000004448-9961.783ENSOARG00000007398-9354.423Ovis_aries
ENSCSAVG00000004448-9961.783ENSPPAG00000029007-9254.986Pan_paniscus
ENSCSAVG00000004448-9961.783ENSPPRG00000001388-9254.986Panthera_pardus
ENSCSAVG00000004448-9961.783ENSPTIG00000010979-9255.036Panthera_tigris_altaica
ENSCSAVG00000004448-9961.783ENSPTRG00000004580CHD49354.981Pan_troglodytes
ENSCSAVG00000004448-9961.783ENSPANG00000025409-9354.925Papio_anubis
ENSCSAVG00000004448-9874.272ENSPKIG00000008268chd4a8774.272Paramormyrops_kingsleyae
ENSCSAVG00000004448-9959.856ENSPKIG00000012023-9550.168Paramormyrops_kingsleyae
ENSCSAVG00000004448-8773.973ENSPSIG00000015546-8873.684Pelodiscus_sinensis
ENSCSAVG00000004448-9960.345ENSPMGG00000022981chd4a9753.580Periophthalmus_magnuspinnatus
ENSCSAVG00000004448-8680.380ENSPMGG00000007681-9668.878Periophthalmus_magnuspinnatus
ENSCSAVG00000004448-9376.355ENSPEMG00000010290Chd49253.543Peromyscus_maniculatus_bairdii
ENSCSAVG00000004448-9961.475ENSPCIG00000001846-9954.720Phascolarctos_cinereus
ENSCSAVG00000004448-9575.610ENSPFOG00000009089chd4a9253.453Poecilia_formosa
ENSCSAVG00000004448-9960.285ENSPFOG00000016981-8672.632Poecilia_formosa
ENSCSAVG00000004448-8674.757ENSPFOG00000013889-8872.430Poecilia_formosa
ENSCSAVG00000004448-8974.163ENSPLAG00000004006-8671.560Poecilia_latipinna
ENSCSAVG00000004448-9274.227ENSPLAG00000012712chd4a9174.611Poecilia_latipinna
ENSCSAVG00000004448-9275.243ENSPMEG00000009633chd4a9453.654Poecilia_mexicana
ENSCSAVG00000004448-9960.451ENSPMEG00000015657-9452.246Poecilia_mexicana
ENSCSAVG00000004448-9959.407ENSPMEG00000006064-9457.542Poecilia_mexicana
ENSCSAVG00000004448-8774.163ENSPREG00000011359-8771.560Poecilia_reticulata
ENSCSAVG00000004448-9959.141ENSPREG00000014285-9453.091Poecilia_reticulata
ENSCSAVG00000004448-9575.610ENSPREG00000001202chd4a9074.611Poecilia_reticulata
ENSCSAVG00000004448-9959.519ENSPPYG00000004192-9353.486Pongo_abelii
ENSCSAVG00000004448-7565.217ENSPCAG00000007120-8462.349Procavia_capensis
ENSCSAVG00000004448-9961.783ENSPCOG00000018635-9354.925Propithecus_coquereli
ENSCSAVG00000004448-9959.761ENSPVAG00000012574-9454.032Pteropus_vampyrus
ENSCSAVG00000004448-9961.538ENSPNYG00000002663chd4a9454.027Pundamilia_nyererei
ENSCSAVG00000004448-9071.041ENSPNYG00000023020-8371.364Pundamilia_nyererei
ENSCSAVG00000004448-9674.038ENSPNAG00000009629chd4a8774.038Pygocentrus_nattereri
ENSCSAVG00000004448-9960.226ENSPNAG00000011129-9453.707Pygocentrus_nattereri
ENSCSAVG00000004448-9961.783ENSRNOG00000018309Chd49254.928Rattus_norvegicus
ENSCSAVG00000004448-9961.783ENSRBIG00000041491-9254.400Rhinopithecus_bieti
ENSCSAVG00000004448-9961.783ENSRROG00000042446-9354.925Rhinopithecus_roxellana
ENSCSAVG00000004448-9961.359ENSSBOG00000020782-9355.163Saimiri_boliviensis_boliviensis
ENSCSAVG00000004448-9971.429ENSSHAG00000015079-9071.429Sarcophilus_harrisii
ENSCSAVG00000004448-9569.163ENSSFOG00015002908chd49369.163Scleropages_formosus
ENSCSAVG00000004448-9959.509ENSSMAG00000010969-8670.909Scophthalmus_maximus
ENSCSAVG00000004448-9775.122ENSSMAG00000012594chd4a8475.122Scophthalmus_maximus
ENSCSAVG00000004448-9177.885ENSSMAG00000017926-8577.885Scophthalmus_maximus
ENSCSAVG00000004448-9959.611ENSSDUG00000012051-8871.364Seriola_dumerili
ENSCSAVG00000004448-9274.757ENSSDUG00000002891chd4a9654.701Seriola_dumerili
ENSCSAVG00000004448-9959.282ENSSLDG00000019750-8978.641Seriola_lalandi_dorsalis
ENSCSAVG00000004448-9376.238ENSSLDG00000018645chd4a9752.381Seriola_lalandi_dorsalis
ENSCSAVG00000004448-9070.852ENSSLDG00000023821-8870.852Seriola_lalandi_dorsalis
ENSCSAVG00000004448-6769.186ENSSARG00000012988-5977.273Sorex_araneus
ENSCSAVG00000004448-8873.973ENSSPUG00000015131-9254.616Sphenodon_punctatus
ENSCSAVG00000004448-9961.359ENSSPAG00000013983chd4a9653.730Stegastes_partitus
ENSCSAVG00000004448-8279.126ENSSPAG00000018749-9353.521Stegastes_partitus
ENSCSAVG00000004448-9961.783ENSSSCG00000000697-9254.981Sus_scrofa
ENSCSAVG00000004448-9961.538ENSTGUG00000013329-9254.515Taeniopygia_guttata
ENSCSAVG00000004448-9960.285ENSTRUG00000007623-8677.404Takifugu_rubripes
ENSCSAVG00000004448-9959.202ENSTRUG00000007202-9557.960Takifugu_rubripes
ENSCSAVG00000004448-9661.596ENSTNIG00000004095-8167.073Tetraodon_nigroviridis
ENSCSAVG00000004448-9959.611ENSTNIG00000008031-9654.098Tetraodon_nigroviridis
ENSCSAVG00000004448-9558.664ENSTBEG00000011379-8857.044Tupaia_belangeri
ENSCSAVG00000004448-9677.143ENSTTRG00000016102-9073.913Tursiops_truncatus
ENSCSAVG00000004448-9961.523ENSUAMG00000016452-9573.973Ursus_americanus
ENSCSAVG00000004448-9961.523ENSUMAG00000005336-8676.355Ursus_maritimus
ENSCSAVG00000004448-9961.783ENSVVUG00000011414-9254.981Vulpes_vulpes
ENSCSAVG00000004448-7565.877ENSXETG00000026410chd49863.521Xenopus_tropicalis
ENSCSAVG00000004448-6457.566ENSXETG00000018961-8950.746Xenopus_tropicalis
ENSCSAVG00000004448-8870.323ENSXCOG00000019269-8770.323Xiphophorus_couchianus
ENSCSAVG00000004448-9962.347ENSXMAG00000001037chd4a9552.481Xiphophorus_maculatus
ENSCSAVG00000004448-9959.202ENSXMAG00000011263-9357.905Xiphophorus_maculatus
ENSCSAVG00000004448-9178.365ENSXMAG00000014686-8479.512Xiphophorus_maculatus

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