EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSCSAVG00000004539 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
-
Gene Type
protein_coding
Species
Ciona_savignyi
Status
putative
Strand
Minus strand
Length
26017 bases
Position
chrreftig_46:754391-780407
Accession
-
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSAVP00000007590RRM_1PF00076.222.3e-3012
ENSCSAVP00000007590RRM_1PF00076.222.3e-3022
ENSCSAVP00000007591RRM_1PF00076.221e-2312
ENSCSAVP00000007591RRM_1PF00076.221e-2322
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSAVT00000007690-717-ENSCSAVP00000007591230 (aa)-H2YQI3
ENSCSAVT00000007689-2186-ENSCSAVP00000007590425 (aa)-H2YQI2
Gene Model
Click here to download ENSCSAVG00000004539's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004539's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSCSAVG00000004539-5345.902ENSCSAVG00000009321-5845.902
ENSCSAVG00000004539-5440.000ENSCSAVG00000003440-8040.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSAVG00000004539-5570.866ENSG00000076067RBMS29643.357Homo_sapiens
ENSCSAVG00000004539-5571.429ENSAPOG00000014215rbms2b9543.424Acanthochromis_polyacanthus
ENSCSAVG00000004539-5570.635ENSAPOG00000023300rbms2a9147.745Acanthochromis_polyacanthus
ENSCSAVG00000004539-5570.866ENSAMEG00000004054RBMS28151.488Ailuropoda_melanoleuca
ENSCSAVG00000004539-5571.429ENSACIG00000016186rbms2b8463.694Amphilophus_citrinellus
ENSCSAVG00000004539-5570.635ENSACIG00000021779rbms2a9045.506Amphilophus_citrinellus
ENSCSAVG00000004539-7949.575ENSAOCG00000008301rbms2a9151.368Amphiprion_ocellaris
ENSCSAVG00000004539-5572.222ENSAOCG00000024245rbms2b9244.557Amphiprion_ocellaris
ENSCSAVG00000004539-7949.435ENSAPEG00000010379rbms2a9247.619Amphiprion_percula
ENSCSAVG00000004539-5571.429ENSAPEG00000003556rbms2b9243.864Amphiprion_percula
ENSCSAVG00000004539-5769.231ENSATEG00000024715rbms2a9147.312Anabas_testudineus
ENSCSAVG00000004539-7947.740ENSATEG00000022569rbms2b8550.799Anabas_testudineus
ENSCSAVG00000004539-7847.159ENSACAG00000016623RBMS28945.745Anolis_carolinensis
ENSCSAVG00000004539-7139.879ENSANAG00000038292RBMS28539.560Aotus_nancymaae
ENSCSAVG00000004539-5571.429ENSACLG00000006706rbms2b9245.078Astatotilapia_calliptera
ENSCSAVG00000004539-5570.635ENSACLG00000002393rbms2a8266.467Astatotilapia_calliptera
ENSCSAVG00000004539-7947.159ENSAMXG00000024719rbms2a8747.159Astyanax_mexicanus
ENSCSAVG00000004539-5569.841ENSAMXG00000017399rbms2b7949.249Astyanax_mexicanus
ENSCSAVG00000004539-5570.079ENSBTAG00000017830RBMS28548.753Bos_taurus
ENSCSAVG00000004539-5570.866ENSCJAG00000010803RBMS28649.162Callithrix_jacchus
ENSCSAVG00000004539-5569.291ENSCJAG00000038571-6053.623Callithrix_jacchus
ENSCSAVG00000004539-7949.041ENSCAFG00000000134RBMS28649.041Canis_familiaris
ENSCSAVG00000004539-7949.041ENSCAFG00020024460RBMS29349.041Canis_lupus_dingo
ENSCSAVG00000004539-5570.866ENSCHIG00000020791RBMS29249.014Capra_hircus
ENSCSAVG00000004539-5570.866ENSTSYG00000001167RBMS28648.901Carlito_syrichta
ENSCSAVG00000004539-5570.635ENSCPOG00000008256RBMS28050.746Cavia_porcellus
ENSCSAVG00000004539-6046.479ENSCCAG00000030291RBMS29643.706Cebus_capucinus
ENSCSAVG00000004539-5570.866ENSCATG00000003342RBMS28648.352Cercocebus_atys
ENSCSAVG00000004539-6067.626ENSCLAG00000012661RBMS28448.991Chinchilla_lanigera
ENSCSAVG00000004539-5570.866ENSCSAG00000005074RBMS28648.626Chlorocebus_sabaeus
ENSCSAVG00000004539-5569.841ENSCPBG00000014176RBMS28547.875Chrysemys_picta_bellii
ENSCSAVG00000004539-10077.494ENSCING00000006391-9978.654Ciona_intestinalis
ENSCSAVG00000004539-5570.866ENSCANG00000038904RBMS28353.199Colobus_angolensis_palliatus
ENSCSAVG00000004539-5669.767ENSCGRG00001023923Rbms25267.513Cricetulus_griseus_chok1gshd
ENSCSAVG00000004539-5669.767ENSCGRG00000017259Rbms25267.513Cricetulus_griseus_crigri
ENSCSAVG00000004539-5570.635ENSCSEG00000003790rbms2a8054.779Cynoglossus_semilaevis
ENSCSAVG00000004539-5571.429ENSCSEG00000008180rbms2b9147.337Cynoglossus_semilaevis
ENSCSAVG00000004539-6066.906ENSCVAG00000013006rbms2b9346.409Cyprinodon_variegatus
ENSCSAVG00000004539-7850.143ENSCVAG00000001635rbms2a8357.529Cyprinodon_variegatus
ENSCSAVG00000004539-7650.867ENSDARG00000056150rbms2b8749.030Danio_rerio
ENSCSAVG00000004539-5570.635ENSDARG00000044179rbms2a8151.220Danio_rerio
ENSCSAVG00000004539-5570.635ENSDNOG00000011198RBMS28641.444Dasypus_novemcinctus
ENSCSAVG00000004539-7841.047ENSDORG00000009231Rbms28641.096Dipodomys_ordii
ENSCSAVG00000004539-5558.730ENSETEG00000010200RBMS25260.406Echinops_telfairi
ENSCSAVG00000004539-5570.635ENSEBUG00000015959-7951.227Eptatretus_burgeri
ENSCSAVG00000004539-5569.291ENSEBUG00000003216-8949.133Eptatretus_burgeri
ENSCSAVG00000004539-7451.682ENSEBUG00000003357-8651.974Eptatretus_burgeri
ENSCSAVG00000004539-7849.171ENSEASG00005005834RBMS28649.041Equus_asinus_asinus
ENSCSAVG00000004539-7949.589ENSECAG00000013470RBMS28849.589Equus_caballus
ENSCSAVG00000004539-6762.338ENSELUG00000019834rbms2a8649.008Esox_lucius
ENSCSAVG00000004539-5667.969ENSELUG00000007892rbms2b8247.988Esox_lucius
ENSCSAVG00000004539-7848.343ENSFCAG00000012028RBMS28648.352Felis_catus
ENSCSAVG00000004539-5770.000ENSFDAG00000009949RBMS26957.795Fukomys_damarensis
ENSCSAVG00000004539-5571.429ENSFHEG00000022377rbms2a9147.581Fundulus_heteroclitus
ENSCSAVG00000004539-5570.635ENSFHEG00000023377rbms2b8947.514Fundulus_heteroclitus
ENSCSAVG00000004539-5570.635ENSGMOG00000005250rbms2b9144.560Gadus_morhua
ENSCSAVG00000004539-5569.291ENSGALG00000038757RBMS28150.602Gallus_gallus
ENSCSAVG00000004539-5571.429ENSGAFG00000002548rbms2a9150.142Gambusia_affinis
ENSCSAVG00000004539-5570.635ENSGAFG00000009648rbms2b8248.000Gambusia_affinis
ENSCSAVG00000004539-6960.759ENSGACG00000000617rbms2a8649.292Gasterosteus_aculeatus
ENSCSAVG00000004539-5569.048ENSGACG00000009332rbms2b8146.087Gasterosteus_aculeatus
ENSCSAVG00000004539-5569.841ENSGAGG00000000381RBMS28547.592Gopherus_agassizii
ENSCSAVG00000004539-5570.079ENSGGOG00000028247-8548.688Gorilla_gorilla
ENSCSAVG00000004539-5570.635ENSHBUG00000023230rbms2a8357.143Haplochromis_burtoni
ENSCSAVG00000004539-7838.136ENSHBUG00000005313rbms2b9337.466Haplochromis_burtoni
ENSCSAVG00000004539-5770.769ENSHGLG00000018238RBMS28649.454Heterocephalus_glaber_female
ENSCSAVG00000004539-5770.769ENSHGLG00100011594RBMS28649.454Heterocephalus_glaber_male
ENSCSAVG00000004539-5769.925ENSHCOG00000019929rbms2b8248.680Hippocampus_comes
ENSCSAVG00000004539-5570.635ENSHCOG00000020072rbms2a8351.064Hippocampus_comes
ENSCSAVG00000004539-7259.880ENSIPUG00000001757rbms2a9344.888Ictalurus_punctatus
ENSCSAVG00000004539-5570.635ENSIPUG00000021323RBMS28849.068Ictalurus_punctatus
ENSCSAVG00000004539-5572.441ENSSTOG00000013442RBMS28748.774Ictidomys_tridecemlineatus
ENSCSAVG00000004539-5570.866ENSJJAG00000015563-8250.149Jaculus_jaculus
ENSCSAVG00000004539-5670.543ENSJJAG00000015940-7949.398Jaculus_jaculus
ENSCSAVG00000004539-5571.429ENSKMAG00000021167rbms2b9645.178Kryptolebias_marmoratus
ENSCSAVG00000004539-7849.284ENSLBEG00000017716rbms2a9148.328Labrus_bergylta
ENSCSAVG00000004539-5571.429ENSLBEG00000010843rbms2b8164.773Labrus_bergylta
ENSCSAVG00000004539-7841.504ENSLACG00000018651RBMS28940.374Latimeria_chalumnae
ENSCSAVG00000004539-5571.429ENSLOCG00000006148rbms2a8847.671Lepisosteus_oculatus
ENSCSAVG00000004539-5570.635ENSLAFG00000008251RBMS28551.124Loxodonta_africana
ENSCSAVG00000004539-5570.866ENSMFAG00000002049RBMS28648.352Macaca_fascicularis
ENSCSAVG00000004539-5570.866ENSMMUG00000019330RBMS28648.077Macaca_mulatta
ENSCSAVG00000004539-5570.866ENSMNEG00000035121RBMS28648.077Macaca_nemestrina
ENSCSAVG00000004539-5570.866ENSMLEG00000032780RBMS28648.352Mandrillus_leucophaeus
ENSCSAVG00000004539-7850.143ENSMAMG00000003821rbms2a9052.597Mastacembelus_armatus
ENSCSAVG00000004539-5571.429ENSMAMG00000007264rbms2b9742.432Mastacembelus_armatus
ENSCSAVG00000004539-5571.429ENSMZEG00005027195rbms2b9245.078Maylandia_zebra
ENSCSAVG00000004539-5570.635ENSMZEG00005006839rbms2a8649.575Maylandia_zebra
ENSCSAVG00000004539-5145.946ENSMAUG00000016984Rbms29643.701Mesocricetus_auratus
ENSCSAVG00000004539-5571.654ENSMICG00000001075RBMS28748.370Microcebus_murinus
ENSCSAVG00000004539-5570.635ENSMOCG00000015140Rbms28248.368Microtus_ochrogaster
ENSCSAVG00000004539-5571.429ENSMMOG00000009177rbms2b9147.293Mola_mola
ENSCSAVG00000004539-5571.429ENSMMOG00000021869rbms2a6065.000Mola_mola
ENSCSAVG00000004539-5569.841ENSMALG00000016900rbms2a9147.745Monopterus_albus
ENSCSAVG00000004539-5572.222ENSMALG00000014520rbms2b8248.433Monopterus_albus
ENSCSAVG00000004539-5571.654MGP_CAROLIEiJ_G0015921Rbms27255.072Mus_caroli
ENSCSAVG00000004539-5571.654ENSMUSG00000040043Rbms27855.072Mus_musculus
ENSCSAVG00000004539-5571.654MGP_PahariEiJ_G0031163Rbms26957.471Mus_pahari
ENSCSAVG00000004539-5571.654MGP_SPRETEiJ_G0016746Rbms27255.072Mus_spretus
ENSCSAVG00000004539-5670.543ENSMPUG00000001490-8451.576Mustela_putorius_furo
ENSCSAVG00000004539-7848.619ENSMLUG00000000530RBMS28648.626Myotis_lucifugus
ENSCSAVG00000004539-5570.866ENSNGAG00000001476Rbms28649.448Nannospalax_galili
ENSCSAVG00000004539-5570.635ENSNBRG00000019651rbms2a8649.575Neolamprologus_brichardi
ENSCSAVG00000004539-5571.429ENSNBRG00000017934rbms2b9546.893Neolamprologus_brichardi
ENSCSAVG00000004539-5570.866ENSNLEG00000017466RBMS28648.901Nomascus_leucogenys
ENSCSAVG00000004539-5567.460ENSMEUG00000015616RBMS25361.215Notamacropus_eugenii
ENSCSAVG00000004539-5769.231ENSODEG00000006249RBMS28154.054Octodon_degus
ENSCSAVG00000004539-5571.429ENSONIG00000012198rbms2b8844.909Oreochromis_niloticus
ENSCSAVG00000004539-5570.635ENSONIG00000019162rbms2a9249.575Oreochromis_niloticus
ENSCSAVG00000004539-5569.841ENSOCUG00000006073RBMS28649.863Oryctolagus_cuniculus
ENSCSAVG00000004539-7850.146ENSORLG00000015426rbms2a9648.626Oryzias_latipes
ENSCSAVG00000004539-5571.429ENSORLG00000007807rbms2b8848.415Oryzias_latipes
ENSCSAVG00000004539-8146.322ENSORLG00020007010rbms2b8845.745Oryzias_latipes_hni
ENSCSAVG00000004539-7850.592ENSORLG00020016803rbms2a9647.838Oryzias_latipes_hni
ENSCSAVG00000004539-8146.594ENSORLG00015022556rbms2b9246.011Oryzias_latipes_hsok
ENSCSAVG00000004539-7850.296ENSORLG00015012519rbms2a9647.568Oryzias_latipes_hsok
ENSCSAVG00000004539-5570.635ENSOMEG00000014637-7561.979Oryzias_melastigma
ENSCSAVG00000004539-7849.570ENSOMEG00000021369rbms2a9648.352Oryzias_melastigma
ENSCSAVG00000004539-5571.429ENSOMEG00000016468rbms2b9645.745Oryzias_melastigma
ENSCSAVG00000004539-7849.307ENSOGAG00000003534RBMS28848.396Otolemur_garnettii
ENSCSAVG00000004539-5570.866ENSOARG00000008570RBMS28151.020Ovis_aries
ENSCSAVG00000004539-5570.866ENSPPAG00000042975-8353.199Pan_paniscus
ENSCSAVG00000004539-5569.291ENSPPAG00000033767-8847.368Pan_paniscus
ENSCSAVG00000004539-7848.343ENSPPRG00000007678RBMS29643.357Panthera_pardus
ENSCSAVG00000004539-7848.343ENSPTIG00000017925RBMS29643.357Panthera_tigris_altaica
ENSCSAVG00000004539-5570.866ENSPTRG00000005104RBMS28353.199Pan_troglodytes
ENSCSAVG00000004539-5570.866ENSPANG00000014113RBMS28648.352Papio_anubis
ENSCSAVG00000004539-5571.429ENSPKIG00000006676rbms2a9246.597Paramormyrops_kingsleyae
ENSCSAVG00000004539-7849.280ENSPMGG00000022594rbms2a9247.467Periophthalmus_magnuspinnatus
ENSCSAVG00000004539-6067.626ENSPEMG00000012948Rbms28848.663Peromyscus_maniculatus_bairdii
ENSCSAVG00000004539-5669.767ENSPMAG00000007358-7650.000Petromyzon_marinus
ENSCSAVG00000004539-5569.048ENSPMAG00000004019-7748.512Petromyzon_marinus
ENSCSAVG00000004539-6072.152ENSPMAG00000004916-7549.200Petromyzon_marinus
ENSCSAVG00000004539-6245.614ENSPCIG00000018048RBMS28843.774Phascolarctos_cinereus
ENSCSAVG00000004539-5571.429ENSPFOG00000002734rbms2a8649.858Poecilia_formosa
ENSCSAVG00000004539-7644.606ENSPFOG00000002923rbms2b9043.169Poecilia_formosa
ENSCSAVG00000004539-5571.429ENSPLAG00000001303rbms2a8949.858Poecilia_latipinna
ENSCSAVG00000004539-5570.635ENSPLAG00000012535-8347.714Poecilia_latipinna
ENSCSAVG00000004539-5557.353ENSPMEG00000015689rbms2b7650.379Poecilia_mexicana
ENSCSAVG00000004539-5571.429ENSPMEG00000020550rbms2a8649.858Poecilia_mexicana
ENSCSAVG00000004539-5571.429ENSPREG00000015038rbms2a8256.250Poecilia_reticulata
ENSCSAVG00000004539-7643.590ENSPREG00000020560rbms2b7656.277Poecilia_reticulata
ENSCSAVG00000004539-5570.866ENSPPYG00000004665RBMS28648.626Pongo_abelii
ENSCSAVG00000004539-5562.698ENSPCAG00000010311RBMS27549.682Procavia_capensis
ENSCSAVG00000004539-5342.063ENSPCOG00000014899-9640.433Propithecus_coquereli
ENSCSAVG00000004539-5571.654ENSPCOG00000016699-8648.901Propithecus_coquereli
ENSCSAVG00000004539-5570.635ENSPVAG00000007616RBMS28748.907Pteropus_vampyrus
ENSCSAVG00000004539-5570.635ENSPNYG00000020829rbms2a8649.575Pundamilia_nyererei
ENSCSAVG00000004539-5571.429ENSPNYG00000017656rbms2b9245.078Pundamilia_nyererei
ENSCSAVG00000004539-5571.429ENSPNYG00000000648-7468.000Pundamilia_nyererei
ENSCSAVG00000004539-7849.425ENSPNAG00000000408rbms2a8847.934Pygocentrus_nattereri
ENSCSAVG00000004539-5570.635ENSPNAG00000019569rbms2b8849.688Pygocentrus_nattereri
ENSCSAVG00000004539-6067.626ENSRNOG00000003076Rbms28250.146Rattus_norvegicus
ENSCSAVG00000004539-5570.866ENSRBIG00000036293RBMS28352.862Rhinopithecus_bieti
ENSCSAVG00000004539-5570.866ENSRROG00000044831RBMS29348.352Rhinopithecus_roxellana
ENSCSAVG00000004539-5570.866ENSSBOG00000028640RBMS29645.000Saimiri_boliviensis_boliviensis
ENSCSAVG00000004539-5570.635ENSSHAG00000004939RBMS28763.084Sarcophilus_harrisii
ENSCSAVG00000004539-7850.298ENSSFOG00015015788rbms2a9648.718Scleropages_formosus
ENSCSAVG00000004539-5570.635ENSSFOG00015006642-9048.324Scleropages_formosus
ENSCSAVG00000004539-5570.635ENSSMAG00000004221rbms2b9544.529Scophthalmus_maximus
ENSCSAVG00000004539-7848.688ENSSMAG00000003683rbms2a9647.207Scophthalmus_maximus
ENSCSAVG00000004539-5571.429ENSSDUG00000013574rbms2b8546.575Seriola_dumerili
ENSCSAVG00000004539-5570.635ENSSDUG00000005666rbms2a9549.102Seriola_dumerili
ENSCSAVG00000004539-5570.635ENSSLDG00000003394rbms2a9549.102Seriola_lalandi_dorsalis
ENSCSAVG00000004539-5571.429ENSSLDG00000004447rbms2b8750.814Seriola_lalandi_dorsalis
ENSCSAVG00000004539-5570.635ENSSPAG00000000639rbms2a9049.401Stegastes_partitus
ENSCSAVG00000004539-5571.429ENSSPAG00000022418rbms2b8648.193Stegastes_partitus
ENSCSAVG00000004539-7849.171ENSSSCG00000000402RBMS28749.046Sus_scrofa
ENSCSAVG00000004539-5768.939ENSTRUG00000006839rbms2b8946.779Takifugu_rubripes
ENSCSAVG00000004539-7059.627ENSTRUG00000008492rbms2a8649.008Takifugu_rubripes
ENSCSAVG00000004539-5770.000ENSTNIG00000015056rbms2b8647.606Tetraodon_nigroviridis
ENSCSAVG00000004539-5569.841ENSTNIG00000014563rbms2a8646.721Tetraodon_nigroviridis
ENSCSAVG00000004539-7146.970ENSTTRG00000002117RBMS28645.580Tursiops_truncatus
ENSCSAVG00000004539-5570.866ENSUAMG00000021435RBMS28749.300Ursus_americanus
ENSCSAVG00000004539-5570.866ENSUMAG00000017426RBMS27953.420Ursus_maritimus
ENSCSAVG00000004539-5570.635ENSVPAG00000004022RBMS28649.853Vicugna_pacos
ENSCSAVG00000004539-7949.041ENSVVUG00000021554RBMS28649.041Vulpes_vulpes
ENSCSAVG00000004539-5569.841ENSXETG00000021787rbms29447.143Xenopus_tropicalis
ENSCSAVG00000004539-7243.385ENSXCOG00000018635rbms2a8845.679Xiphophorus_couchianus
ENSCSAVG00000004539-5571.429ENSXCOG00000006995rbms2b9049.852Xiphophorus_couchianus
ENSCSAVG00000004539-5571.429ENSXMAG00000002318rbms2a9050.588Xiphophorus_maculatus
ENSCSAVG00000004539-5570.635ENSXMAG00000011428rbms2b9047.851Xiphophorus_maculatus

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