EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000004543 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 21666 bases
Position: chrreftig_133:315888-337553
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000007595	zf-C2H2	PF00096.26	1e-70	1	11
ENSCSAVP00000007595	zf-C2H2	PF00096.26	1e-70	2	11
ENSCSAVP00000007595	zf-C2H2	PF00096.26	1e-70	3	11
ENSCSAVP00000007595	zf-C2H2	PF00096.26	1e-70	4	11
ENSCSAVP00000007595	zf-C2H2	PF00096.26	1e-70	5	11
ENSCSAVP00000007595	zf-C2H2	PF00096.26	1e-70	6	11
ENSCSAVP00000007595	zf-C2H2	PF00096.26	1e-70	7	11
ENSCSAVP00000007595	zf-C2H2	PF00096.26	1e-70	8	11
ENSCSAVP00000007595	zf-C2H2	PF00096.26	1e-70	9	11
ENSCSAVP00000007595	zf-C2H2	PF00096.26	1e-70	10	11
ENSCSAVP00000007595	zf-C2H2	PF00096.26	1e-70	11	11
ENSCSAVP00000007598	zf-C2H2	PF00096.26	2.2e-37	1	6
ENSCSAVP00000007598	zf-C2H2	PF00096.26	2.2e-37	2	6
ENSCSAVP00000007598	zf-C2H2	PF00096.26	2.2e-37	3	6
ENSCSAVP00000007598	zf-C2H2	PF00096.26	2.2e-37	4	6
ENSCSAVP00000007598	zf-C2H2	PF00096.26	2.2e-37	5	6
ENSCSAVP00000007598	zf-C2H2	PF00096.26	2.2e-37	6	6
ENSCSAVP00000007596	zf-C2H2	PF00096.26	9.7e-18	1	3
ENSCSAVP00000007596	zf-C2H2	PF00096.26	9.7e-18	2	3
ENSCSAVP00000007596	zf-C2H2	PF00096.26	9.7e-18	3	3
ENSCSAVP00000007595	zf-met	PF12874.7	1.1e-14	1	1
ENSCSAVP00000007598	zf-met	PF12874.7	0.00024	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000007694	-	1023	-	ENSCSAVP00000007595	341 (aa)	-	H2YQI7
ENSCSAVT00000007695	-	779	-	ENSCSAVP00000007596	251 (aa)	-	H2YQI8
ENSCSAVT00000007696	-	801	-	ENSCSAVP00000007597	202 (aa)	-	H2YQI9
ENSCSAVT00000007697	-	1821	-	ENSCSAVP00000007598	607 (aa)	-	H2YQJ0

Gene Model

Click here to download ENSCSAVG00000004543's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004543's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000004543	-	100	38.565	ENSCSAVG00000000642	-	99	44.643
ENSCSAVG00000004543	-	99	42.683	ENSCSAVG00000003895	-	100	42.683
ENSCSAVG00000004543	-	100	37.168	ENSCSAVG00000000649	-	99	43.750
ENSCSAVG00000004543	-	90	32.609	ENSCSAVG00000009421	-	61	32.609
ENSCSAVG00000004543	-	99	32.489	ENSCSAVG00000009217	-	99	30.218
ENSCSAVG00000004543	-	100	37.874	ENSCSAVG00000000293	-	99	43.284
ENSCSAVG00000004543	-	100	53.968	ENSCSAVG00000006608	-	99	56.667
ENSCSAVG00000004543	-	100	37.719	ENSCSAVG00000001834	-	98	46.914
ENSCSAVG00000004543	-	99	36.364	ENSCSAVG00000000520	-	100	46.250
ENSCSAVG00000004543	-	99	37.931	ENSCSAVG00000009583	-	98	42.857
ENSCSAVG00000004543	-	100	45.455	ENSCSAVG00000008862	-	99	47.368
ENSCSAVG00000004543	-	99	38.525	ENSCSAVG00000009739	-	61	38.525
ENSCSAVG00000004543	-	93	35.260	ENSCSAVG00000004762	-	98	39.286
ENSCSAVG00000004543	-	99	41.509	ENSCSAVG00000001830	-	99	43.421
ENSCSAVG00000004543	-	100	38.053	ENSCSAVG00000004703	-	98	48.684
ENSCSAVG00000004543	-	99	37.838	ENSCSAVG00000009819	-	72	43.243
ENSCSAVG00000004543	-	99	41.975	ENSCSAVG00000000655	-	100	42.500
ENSCSAVG00000004543	-	99	34.247	ENSCSAVG00000005896	-	68	41.772
ENSCSAVG00000004543	-	99	39.233	ENSCSAVG00000004499	-	99	45.238
ENSCSAVG00000004543	-	99	37.500	ENSCSAVG00000000673	-	99	43.750
ENSCSAVG00000004543	-	95	38.462	ENSCSAVG00000003690	-	100	38.462
ENSCSAVG00000004543	-	99	38.643	ENSCSAVG00000009953	-	98	43.038
ENSCSAVG00000004543	-	99	36.181	ENSCSAVG00000002179	-	98	42.105
ENSCSAVG00000004543	-	100	37.349	ENSCSAVG00000006650	-	99	41.489
ENSCSAVG00000004543	-	100	36.578	ENSCSAVG00000004678	-	98	46.250
ENSCSAVG00000004543	-	100	42.353	ENSCSAVG00000001989	-	99	44.872
ENSCSAVG00000004543	-	100	39.080	ENSCSAVG00000011749	-	84	40.678
ENSCSAVG00000004543	-	99	37.931	ENSCSAVG00000001808	-	99	43.103
ENSCSAVG00000004543	-	100	37.500	ENSCSAVG00000000690	-	99	41.892
ENSCSAVG00000004543	-	99	37.463	ENSCSAVG00000010960	-	99	45.070
ENSCSAVG00000004543	-	100	40.469	ENSCSAVG00000006141	-	99	45.070
ENSCSAVG00000004543	-	100	36.207	ENSCSAVG00000010156	-	95	44.444
ENSCSAVG00000004543	-	99	36.986	ENSCSAVG00000007918	-	99	43.421
ENSCSAVG00000004543	-	99	40.000	ENSCSAVG00000011146	-	91	40.000
ENSCSAVG00000004543	-	100	42.500	ENSCSAVG00000007589	-	99	50.000
ENSCSAVG00000004543	-	91	40.506	ENSCSAVG00000001949	-	99	45.455
ENSCSAVG00000004543	-	99	32.867	ENSCSAVG00000006729	-	68	37.931
ENSCSAVG00000004543	-	100	37.719	ENSCSAVG00000009574	-	98	43.750
ENSCSAVG00000004543	-	51	34.862	ENSCSAVG00000006745	-	70	40.299
ENSCSAVG00000004543	-	99	40.000	ENSCSAVG00000006028	-	56	38.806
ENSCSAVG00000004543	-	99	38.168	ENSCSAVG00000005904	-	99	43.860

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000004543	-	99	86.047	ENSDARG00000078324	si:ch211-263k4.2	85	88.136	Danio_rerio