EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000004578 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 2288 bases
Position: chrreftig_77:1550527-1552814
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000007658	LSM	PF01423.22	2.1e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000007758	-	618	-	ENSCSAVP00000007658	125 (aa)	-	H2YQQ0

Gene Model

Click here to download ENSCSAVG00000004578's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004578's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000004578	-	70	85.057	ENSG00000167088	SNRPD1	68	96.667	Homo_sapiens
ENSCSAVG00000004578	-	66	85.542	ENSAMEG00000002576	SNRPD1	71	85.542	Ailuropoda_melanoleuca
ENSCSAVG00000004578	-	64	83.750	ENSACIG00000011263	snrpd1	71	83.750	Amphilophus_citrinellus
ENSCSAVG00000004578	-	70	83.908	ENSAOCG00000007406	snrpd1	73	83.908	Amphiprion_ocellaris
ENSCSAVG00000004578	-	70	78.161	ENSAPEG00000014961	snrpd1	72	78.161	Amphiprion_percula
ENSCSAVG00000004578	-	64	83.750	ENSAPEG00000012539	SNRPD1	71	83.750	Amphiprion_percula
ENSCSAVG00000004578	-	70	83.908	ENSATEG00000014399	snrpd1	73	83.908	Anabas_testudineus
ENSCSAVG00000004578	-	66	85.542	ENSAPLG00000012256	SNRPD1	71	83.529	Anas_platyrhynchos
ENSCSAVG00000004578	-	70	85.057	ENSACAG00000006364	SNRPD1	73	85.057	Anolis_carolinensis
ENSCSAVG00000004578	-	70	85.057	ENSANAG00000025641	SNRPD1	73	85.057	Aotus_nancymaae
ENSCSAVG00000004578	-	64	83.750	ENSACLG00000017406	snrpd1	71	83.750	Astatotilapia_calliptera
ENSCSAVG00000004578	-	78	78.351	ENSAMXG00000004589	snrpd1	73	85.057	Astyanax_mexicanus
ENSCSAVG00000004578	-	70	82.759	ENSBTAG00000012376	-	65	82.759	Bos_taurus
ENSCSAVG00000004578	-	70	82.759	ENSBTAG00000047266	-	73	82.759	Bos_taurus
ENSCSAVG00000004578	-	70	85.057	ENSBTAG00000008292	SNRPD1	73	85.057	Bos_taurus
ENSCSAVG00000004578	-	93	65.517	ENSBTAG00000055316	-	73	81.176	Bos_taurus
ENSCSAVG00000004578	-	69	77.907	WBGene00004916	snr-3	68	77.907	Caenorhabditis_elegans
ENSCSAVG00000004578	-	70	85.057	ENSCJAG00000042955	SNRPD1	73	85.057	Callithrix_jacchus
ENSCSAVG00000004578	-	70	85.057	ENSCAFG00000018247	SNRPD1	73	85.057	Canis_familiaris
ENSCSAVG00000004578	-	70	85.057	ENSCAFG00020015914	SNRPD1	68	85.057	Canis_lupus_dingo
ENSCSAVG00000004578	-	68	84.706	ENSCHIG00000005557	SNRPD1	71	84.706	Capra_hircus
ENSCSAVG00000004578	-	70	85.057	ENSTSYG00000030028	SNRPD1	73	85.057	Carlito_syrichta
ENSCSAVG00000004578	-	66	84.337	ENSCAPG00000008103	SNRPD1	72	84.337	Cavia_aperea
ENSCSAVG00000004578	-	70	85.057	ENSCPOG00000004679	SNRPD1	73	85.057	Cavia_porcellus
ENSCSAVG00000004578	-	70	83.908	ENSCCAG00000020611	-	73	83.908	Cebus_capucinus
ENSCSAVG00000004578	-	70	80.460	ENSCCAG00000005390	-	73	80.460	Cebus_capucinus
ENSCSAVG00000004578	-	69	82.558	ENSCCAG00000016652	-	73	81.609	Cebus_capucinus
ENSCSAVG00000004578	-	70	85.057	ENSCCAG00000032658	SNRPD1	73	85.057	Cebus_capucinus
ENSCSAVG00000004578	-	70	85.057	ENSCATG00000039978	SNRPD1	73	85.057	Cercocebus_atys
ENSCSAVG00000004578	-	70	85.057	ENSCLAG00000008691	SNRPD1	73	85.057	Chinchilla_lanigera
ENSCSAVG00000004578	-	70	85.057	ENSCSAG00000017654	SNRPD1	73	85.057	Chlorocebus_sabaeus
ENSCSAVG00000004578	-	70	85.057	ENSCPBG00000023143	SNRPD1	74	85.057	Chrysemys_picta_bellii
ENSCSAVG00000004578	-	95	89.916	ENSCING00000024100	-	95	89.916	Ciona_intestinalis
ENSCSAVG00000004578	-	70	62.069	ENSCGRG00001009945	-	76	62.069	Cricetulus_griseus_chok1gshd
ENSCSAVG00000004578	-	70	85.057	ENSCGRG00001021055	-	73	85.057	Cricetulus_griseus_chok1gshd
ENSCSAVG00000004578	-	70	85.057	ENSCGRG00000000490	-	73	85.057	Cricetulus_griseus_crigri
ENSCSAVG00000004578	-	70	62.069	ENSCGRG00000006224	-	76	62.069	Cricetulus_griseus_crigri
ENSCSAVG00000004578	-	70	82.759	ENSCSEG00000018141	snrpd1	73	82.759	Cynoglossus_semilaevis
ENSCSAVG00000004578	-	70	83.908	ENSCVAG00000000534	snrpd1	73	83.908	Cyprinodon_variegatus
ENSCSAVG00000004578	-	70	85.057	ENSDARG00000011648	snrpd1	88	84.524	Danio_rerio
ENSCSAVG00000004578	-	70	85.057	ENSDNOG00000040310	SNRPD1	73	85.057	Dasypus_novemcinctus
ENSCSAVG00000004578	-	70	85.057	ENSDORG00000008349	Snrpd1	73	85.057	Dipodomys_ordii
ENSCSAVG00000004578	-	69	82.558	FBgn0261933	SmD1	69	82.558	Drosophila_melanogaster
ENSCSAVG00000004578	-	81	77.228	ENSEBUG00000003170	snrpd1	86	86.207	Eptatretus_burgeri
ENSCSAVG00000004578	-	64	85.000	ENSEASG00005002433	SNRPD1	71	85.000	Equus_asinus_asinus
ENSCSAVG00000004578	-	64	85.000	ENSECAG00000014373	SNRPD1	71	85.000	Equus_caballus
ENSCSAVG00000004578	-	66	85.366	ENSEEUG00000004987	SNRPD1	92	85.366	Erinaceus_europaeus
ENSCSAVG00000004578	-	79	77.000	ENSELUG00000000088	snrpd1	73	83.908	Esox_lucius
ENSCSAVG00000004578	-	70	85.057	ENSFCAG00000012352	SNRPD1	73	85.057	Felis_catus
ENSCSAVG00000004578	-	64	85.000	ENSFALG00000002646	SNRPD1	71	85.000	Ficedula_albicollis
ENSCSAVG00000004578	-	70	85.057	ENSGMOG00000015607	snrpd1	73	85.057	Gadus_morhua
ENSCSAVG00000004578	-	70	85.057	ENSGALG00000041334	SNRPD1	73	85.057	Gallus_gallus
ENSCSAVG00000004578	-	70	83.908	ENSGAFG00000011171	snrpd1	73	83.908	Gambusia_affinis
ENSCSAVG00000004578	-	70	85.057	ENSGACG00000005201	SNRPD1	73	85.057	Gasterosteus_aculeatus
ENSCSAVG00000004578	-	70	85.057	ENSGAGG00000011197	SNRPD1	73	85.057	Gopherus_agassizii
ENSCSAVG00000004578	-	70	79.310	ENSGGOG00000026706	-	73	79.310	Gorilla_gorilla
ENSCSAVG00000004578	-	70	85.057	ENSGGOG00000041053	SNRPD1	73	85.057	Gorilla_gorilla
ENSCSAVG00000004578	-	70	83.908	ENSHBUG00000003236	snrpd1	73	83.908	Haplochromis_burtoni
ENSCSAVG00000004578	-	70	85.057	ENSHGLG00000007152	SNRPD1	73	85.057	Heterocephalus_glaber_female
ENSCSAVG00000004578	-	70	85.057	ENSHGLG00100008618	SNRPD1	73	85.057	Heterocephalus_glaber_male
ENSCSAVG00000004578	-	70	83.908	ENSIPUG00000003576	snrpd1	73	83.908	Ictalurus_punctatus
ENSCSAVG00000004578	-	70	85.057	ENSSTOG00000000485	SNRPD1	73	85.057	Ictidomys_tridecemlineatus
ENSCSAVG00000004578	-	70	85.057	ENSJJAG00000017698	Snrpd1	73	85.057	Jaculus_jaculus
ENSCSAVG00000004578	-	70	83.908	ENSKMAG00000005987	snrpd1	73	83.908	Kryptolebias_marmoratus
ENSCSAVG00000004578	-	70	83.908	ENSLBEG00000003327	snrpd1	73	83.908	Labrus_bergylta
ENSCSAVG00000004578	-	70	85.057	ENSLACG00000001955	SNRPD1	73	85.057	Latimeria_chalumnae
ENSCSAVG00000004578	-	68	85.882	ENSLOCG00000002003	snrpd1	73	85.882	Lepisosteus_oculatus
ENSCSAVG00000004578	-	69	83.721	ENSLAFG00000005819	SNRPD1	73	83.721	Loxodonta_africana
ENSCSAVG00000004578	-	70	85.057	ENSMFAG00000042080	SNRPD1	73	85.057	Macaca_fascicularis
ENSCSAVG00000004578	-	68	83.529	ENSMMUG00000003992	SNRPD1	70	85.366	Macaca_mulatta
ENSCSAVG00000004578	-	70	85.057	ENSMNEG00000041296	SNRPD1	73	85.057	Macaca_nemestrina
ENSCSAVG00000004578	-	70	85.057	ENSMLEG00000028659	SNRPD1	73	85.057	Mandrillus_leucophaeus
ENSCSAVG00000004578	-	70	83.908	ENSMAMG00000012971	snrpd1	73	83.908	Mastacembelus_armatus
ENSCSAVG00000004578	-	70	83.908	ENSMZEG00005004685	snrpd1	73	83.908	Maylandia_zebra
ENSCSAVG00000004578	-	68	83.529	ENSMGAG00000011598	SNRPD1	70	83.529	Meleagris_gallopavo
ENSCSAVG00000004578	-	70	70.115	ENSMAUG00000016467	-	78	70.115	Mesocricetus_auratus
ENSCSAVG00000004578	-	77	77.083	ENSMAUG00000006829	-	54	85.542	Mesocricetus_auratus
ENSCSAVG00000004578	-	70	70.115	ENSMAUG00000016502	-	78	70.115	Mesocricetus_auratus
ENSCSAVG00000004578	-	70	85.057	ENSMICG00000044066	SNRPD1	73	85.057	Microcebus_murinus
ENSCSAVG00000004578	-	70	85.057	ENSMOCG00000017367	Snrpd1	73	85.057	Microtus_ochrogaster
ENSCSAVG00000004578	-	70	83.908	ENSMMOG00000019089	snrpd1	73	83.908	Mola_mola
ENSCSAVG00000004578	-	70	85.057	ENSMODG00000021487	SNRPD1	73	85.057	Monodelphis_domestica
ENSCSAVG00000004578	-	70	83.908	ENSMALG00000014459	snrpd1	73	83.908	Monopterus_albus
ENSCSAVG00000004578	-	70	85.057	MGP_CAROLIEiJ_G0021994	Snrpd1	73	85.057	Mus_caroli
ENSCSAVG00000004578	-	70	85.057	ENSMUSG00000002477	Snrpd1	73	85.057	Mus_musculus
ENSCSAVG00000004578	-	70	85.057	MGP_PahariEiJ_G0018731	Snrpd1	73	85.057	Mus_pahari
ENSCSAVG00000004578	-	70	85.057	MGP_SPRETEiJ_G0022910	Snrpd1	73	85.057	Mus_spretus
ENSCSAVG00000004578	-	66	85.542	ENSMPUG00000005567	-	71	85.542	Mustela_putorius_furo
ENSCSAVG00000004578	-	70	83.908	ENSMPUG00000020041	-	73	83.908	Mustela_putorius_furo
ENSCSAVG00000004578	-	68	84.706	ENSMLUG00000009124	SNRPD1	66	84.706	Myotis_lucifugus
ENSCSAVG00000004578	-	70	85.057	ENSNGAG00000023946	Snrpd1	73	85.057	Nannospalax_galili
ENSCSAVG00000004578	-	70	83.908	ENSNBRG00000012119	snrpd1	72	83.908	Neolamprologus_brichardi
ENSCSAVG00000004578	-	70	81.609	ENSNLEG00000031430	SNRPD1	72	81.609	Nomascus_leucogenys
ENSCSAVG00000004578	-	70	85.057	ENSODEG00000005764	SNRPD1	73	85.057	Octodon_degus
ENSCSAVG00000004578	-	70	83.908	ENSONIG00000002486	snrpd1	73	83.908	Oreochromis_niloticus
ENSCSAVG00000004578	-	66	78.049	ENSOANG00000004638	-	70	77.108	Ornithorhynchus_anatinus
ENSCSAVG00000004578	-	66	85.542	ENSOCUG00000023761	-	71	85.542	Oryctolagus_cuniculus
ENSCSAVG00000004578	-	70	83.908	ENSOCUG00000014399	-	73	83.908	Oryctolagus_cuniculus
ENSCSAVG00000004578	-	64	83.750	ENSORLG00000012516	snrpd1	71	83.750	Oryzias_latipes
ENSCSAVG00000004578	-	70	83.908	ENSORLG00020005743	snrpd1	73	83.908	Oryzias_latipes_hni
ENSCSAVG00000004578	-	70	83.908	ENSORLG00015013402	snrpd1	73	83.908	Oryzias_latipes_hsok
ENSCSAVG00000004578	-	70	83.908	ENSOMEG00000011571	snrpd1	73	83.908	Oryzias_melastigma
ENSCSAVG00000004578	-	68	83.529	ENSOGAG00000007833	SNRPD1	71	83.529	Otolemur_garnettii
ENSCSAVG00000004578	-	94	69.492	ENSOARG00000003413	-	65	85.057	Ovis_aries
ENSCSAVG00000004578	-	70	85.057	ENSPPAG00000042593	SNRPD1	73	85.057	Pan_paniscus
ENSCSAVG00000004578	-	70	85.057	ENSPPRG00000002399	SNRPD1	73	85.057	Panthera_pardus
ENSCSAVG00000004578	-	70	58.621	ENSPPRG00000005009	-	65	58.621	Panthera_pardus
ENSCSAVG00000004578	-	66	85.366	ENSPTIG00000013206	SNRPD1	72	85.366	Panthera_tigris_altaica
ENSCSAVG00000004578	-	92	69.565	ENSPTRG00000009909	SNRPD1	73	85.057	Pan_troglodytes
ENSCSAVG00000004578	-	70	80.460	ENSPTRG00000050159	-	74	80.460	Pan_troglodytes
ENSCSAVG00000004578	-	70	85.057	ENSPANG00000023478	SNRPD1	73	85.057	Papio_anubis
ENSCSAVG00000004578	-	64	83.750	ENSPKIG00000021610	snrpd1	71	83.750	Paramormyrops_kingsleyae
ENSCSAVG00000004578	-	70	82.759	ENSPKIG00000003985	SNRPD1	73	82.759	Paramormyrops_kingsleyae
ENSCSAVG00000004578	-	70	83.908	ENSPMGG00000001862	snrpd1	73	83.908	Periophthalmus_magnuspinnatus
ENSCSAVG00000004578	-	70	85.057	ENSPEMG00000014773	-	73	85.057	Peromyscus_maniculatus_bairdii
ENSCSAVG00000004578	-	69	88.636	ENSPMAG00000003938	-	73	87.640	Petromyzon_marinus
ENSCSAVG00000004578	-	70	85.057	ENSPCIG00000020320	SNRPD1	73	85.057	Phascolarctos_cinereus
ENSCSAVG00000004578	-	94	68.644	ENSPFOG00000012448	SNRPD1	77	83.908	Poecilia_formosa
ENSCSAVG00000004578	-	94	68.644	ENSPLAG00000006738	snrpd1	77	83.908	Poecilia_latipinna
ENSCSAVG00000004578	-	94	68.644	ENSPMEG00000021942	snrpd1	77	83.908	Poecilia_mexicana
ENSCSAVG00000004578	-	70	83.908	ENSPREG00000007094	snrpd1	73	83.908	Poecilia_reticulata
ENSCSAVG00000004578	-	70	85.057	ENSPPYG00000025874	SNRPD1	73	85.057	Pongo_abelii
ENSCSAVG00000004578	-	70	85.057	ENSPCOG00000013327	SNRPD1	73	85.057	Propithecus_coquereli
ENSCSAVG00000004578	-	70	85.057	ENSPVAG00000005511	SNRPD1	58	85.057	Pteropus_vampyrus
ENSCSAVG00000004578	-	70	85.057	ENSPNAG00000017824	snrpd1	73	85.057	Pygocentrus_nattereri
ENSCSAVG00000004578	-	70	85.057	ENSRNOG00000013714	Snrpd1	73	85.057	Rattus_norvegicus
ENSCSAVG00000004578	-	70	85.057	ENSRBIG00000022996	SNRPD1	73	85.057	Rhinopithecus_bieti
ENSCSAVG00000004578	-	70	85.057	ENSRROG00000027640	SNRPD1	73	85.057	Rhinopithecus_roxellana
ENSCSAVG00000004578	-	70	85.057	ENSSBOG00000020998	SNRPD1	73	85.057	Saimiri_boliviensis_boliviensis
ENSCSAVG00000004578	-	70	85.057	ENSSHAG00000011791	SNRPD1	73	85.057	Sarcophilus_harrisii
ENSCSAVG00000004578	-	70	85.057	ENSSFOG00015008809	-	73	85.057	Scleropages_formosus
ENSCSAVG00000004578	-	70	85.057	ENSSFOG00015022253	-	73	85.057	Scleropages_formosus
ENSCSAVG00000004578	-	70	83.908	ENSSMAG00000008765	snrpd1	73	83.908	Scophthalmus_maximus
ENSCSAVG00000004578	-	67	82.143	ENSSDUG00000010521	snrpd1	70	83.133	Seriola_dumerili
ENSCSAVG00000004578	-	70	83.908	ENSSLDG00000011858	snrpd1	73	83.908	Seriola_lalandi_dorsalis
ENSCSAVG00000004578	-	54	86.567	ENSSARG00000004271	SNRPD1	100	86.567	Sorex_araneus
ENSCSAVG00000004578	-	70	85.057	ENSSPUG00000002824	SNRPD1	73	85.057	Sphenodon_punctatus
ENSCSAVG00000004578	-	64	83.750	ENSSPAG00000015229	snrpd1	71	83.750	Stegastes_partitus
ENSCSAVG00000004578	-	70	85.057	ENSSSCG00000003701	SNRPD1	73	85.057	Sus_scrofa
ENSCSAVG00000004578	-	68	83.529	ENSTGUG00000005095	SNRPD1	71	83.529	Taeniopygia_guttata
ENSCSAVG00000004578	-	64	85.000	ENSTRUG00000008977	snrpd1	71	85.000	Takifugu_rubripes
ENSCSAVG00000004578	-	57	76.056	ENSTNIG00000001224	snrpd1	68	76.056	Tetraodon_nigroviridis
ENSCSAVG00000004578	-	66	85.542	ENSTTRG00000002654	SNRPD1	72	85.542	Tursiops_truncatus
ENSCSAVG00000004578	-	78	78.351	ENSUAMG00000013431	SNRPD1	87	85.057	Ursus_americanus
ENSCSAVG00000004578	-	70	85.057	ENSUMAG00000019740	SNRPD1	73	85.057	Ursus_maritimus
ENSCSAVG00000004578	-	70	85.057	ENSVPAG00000010056	SNRPD1	58	85.057	Vicugna_pacos
ENSCSAVG00000004578	-	64	85.000	ENSVVUG00000004009	SNRPD1	71	85.000	Vulpes_vulpes
ENSCSAVG00000004578	-	70	85.057	ENSXETG00000027354	snrpd1	73	85.057	Xenopus_tropicalis
ENSCSAVG00000004578	-	70	83.908	ENSXCOG00000020108	snrpd1	73	83.908	Xiphophorus_couchianus
ENSCSAVG00000004578	-	70	83.908	ENSXMAG00000003368	snrpd1	73	83.908	Xiphophorus_maculatus