EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000004620 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 14620 bases
Position: chrreftig_26:366614-381233
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000007734	ResIII	PF04851.15	2.9e-09	1	1
ENSCSAVP00000007732	ResIII	PF04851.15	4.9e-09	1	1
ENSCSAVP00000007733	ResIII	PF04851.15	5e-09	1	1
ENSCSAVP00000007731	ResIII	PF04851.15	5.1e-09	1	1
ENSCSAVP00000007730	ResIII	PF04851.15	5.7e-09	1	1
ENSCSAVP00000007729	ResIII	PF04851.15	6.1e-09	1	1
ENSCSAVP00000007734	DEAD	PF00270.29	5.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000007829	-	3034	-	ENSCSAVP00000007729	1001 (aa)	-	H2YQW9
ENSCSAVT00000007830	-	3393	-	ENSCSAVP00000007730	966 (aa)	-	H2YQX0
ENSCSAVT00000007831	-	2718	-	ENSCSAVP00000007731	906 (aa)	-	H2YQX1
ENSCSAVT00000007832	-	2686	-	ENSCSAVP00000007732	894 (aa)	-	H2YQX2
ENSCSAVT00000007833	-	2691	-	ENSCSAVP00000007733	897 (aa)	-	H2YQX3
ENSCSAVT00000007834	-	2212	-	ENSCSAVP00000007734	714 (aa)	-	H2YQX4

Gene Model

Click here to download ENSCSAVG00000004620's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004620's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000004620	-	72	42.697	ENSCSAVG00000005559	-	62	37.664
ENSCSAVG00000004620	-	66	41.833	ENSCSAVG00000005900	-	77	41.476
ENSCSAVG00000004620	-	68	42.633	ENSCSAVG00000004448	-	57	41.133
ENSCSAVG00000004620	-	91	37.122	ENSCSAVG00000007580	-	68	37.122
ENSCSAVG00000004620	-	67	41.558	ENSCSAVG00000007529	-	99	38.291
ENSCSAVG00000004620	-	54	41.584	ENSCSAVG00000002857	-	65	41.584

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000004620	-	100	74.165	ENSG00000102038	SMARCA1	92	73.069	Homo_sapiens
ENSCSAVG00000004620	-	99	76.286	ENSAPOG00000016035	smarca5	98	76.831	Acanthochromis_polyacanthus
ENSCSAVG00000004620	-	100	73.187	ENSAMEG00000015218	SMARCA1	92	72.312	Ailuropoda_melanoleuca
ENSCSAVG00000004620	-	99	75.850	ENSACIG00000016982	smarca5	99	76.412	Amphilophus_citrinellus
ENSCSAVG00000004620	-	99	76.286	ENSAOCG00000015578	smarca5	96	73.340	Amphiprion_ocellaris
ENSCSAVG00000004620	-	99	76.286	ENSAPEG00000011117	smarca5	99	77.358	Amphiprion_percula
ENSCSAVG00000004620	-	99	75.391	ENSATEG00000012894	smarca5	96	72.898	Anabas_testudineus
ENSCSAVG00000004620	-	100	74.499	ENSAPLG00000013149	SMARCA1	99	73.900	Anas_platyrhynchos
ENSCSAVG00000004620	-	100	75.056	ENSACAG00000011376	SMARCA1	92	74.794	Anolis_carolinensis
ENSCSAVG00000004620	-	100	69.042	ENSANAG00000023098	SMARCA1	92	68.496	Aotus_nancymaae
ENSCSAVG00000004620	-	99	75.839	ENSACLG00000025356	smarca5	98	72.576	Astatotilapia_calliptera
ENSCSAVG00000004620	-	99	75.700	ENSAMXG00000011227	smarca1	98	76.914	Astyanax_mexicanus
ENSCSAVG00000004620	-	99	76.063	ENSAMXG00000005709	smarca5	95	73.800	Astyanax_mexicanus
ENSCSAVG00000004620	-	100	74.165	ENSBTAG00000002292	SMARCA1	91	73.514	Bos_taurus
ENSCSAVG00000004620	-	100	62.848	WBGene00002169	isw-1	95	60.615	Caenorhabditis_elegans
ENSCSAVG00000004620	-	100	74.165	ENSCJAG00000002868	SMARCA1	92	73.069	Callithrix_jacchus
ENSCSAVG00000004620	-	100	65.027	ENSCAFG00000018673	SMARCA1	99	66.354	Canis_familiaris
ENSCSAVG00000004620	-	100	74.165	ENSCAFG00020001751	SMARCA1	92	73.089	Canis_lupus_dingo
ENSCSAVG00000004620	-	100	74.165	ENSCHIG00000009837	SMARCA1	92	73.089	Capra_hircus
ENSCSAVG00000004620	-	100	74.165	ENSTSYG00000004240	SMARCA1	95	73.777	Carlito_syrichta
ENSCSAVG00000004620	-	100	74.053	ENSCPOG00000013601	SMARCA1	94	71.785	Cavia_porcellus
ENSCSAVG00000004620	-	100	71.269	ENSCCAG00000030817	SMARCA1	92	70.325	Cebus_capucinus
ENSCSAVG00000004620	-	100	74.165	ENSCATG00000015921	SMARCA1	91	74.086	Cercocebus_atys
ENSCSAVG00000004620	-	100	73.719	ENSCLAG00000002171	SMARCA1	93	72.016	Chinchilla_lanigera
ENSCSAVG00000004620	-	100	74.165	ENSCSAG00000008460	SMARCA1	92	73.069	Chlorocebus_sabaeus
ENSCSAVG00000004620	-	100	74.499	ENSCPBG00000001146	SMARCA1	93	73.488	Chrysemys_picta_bellii
ENSCSAVG00000004620	-	99	93.175	ENSCING00000004110	swi/snf	99	91.924	Ciona_intestinalis
ENSCSAVG00000004620	-	100	74.276	ENSCANG00000007183	SMARCA1	92	73.171	Colobus_angolensis_palliatus
ENSCSAVG00000004620	-	100	73.274	ENSCGRG00001010776	Smarca1	93	71.558	Cricetulus_griseus_chok1gshd
ENSCSAVG00000004620	-	100	73.051	ENSCGRG00000015301	Smarca1	98	71.400	Cricetulus_griseus_crigri
ENSCSAVG00000004620	-	99	76.174	ENSCSEG00000000328	smarca5	98	73.111	Cynoglossus_semilaevis
ENSCSAVG00000004620	-	99	75.727	ENSCVAG00000008668	smarca5	99	76.561	Cyprinodon_variegatus
ENSCSAVG00000004620	-	100	72.737	ENSDARG00000012776	smarca1	96	72.417	Danio_rerio
ENSCSAVG00000004620	-	99	75.615	ENSDARG00000052348	smarca5	96	72.790	Danio_rerio
ENSCSAVG00000004620	-	99	74.609	ENSDNOG00000004315	SMARCA1	92	74.190	Dasypus_novemcinctus
ENSCSAVG00000004620	-	100	73.831	ENSDORG00000009270	Smarca1	92	73.216	Dipodomys_ordii
ENSCSAVG00000004620	-	99	72.575	FBgn0011604	Iswi	95	70.415	Drosophila_melanogaster
ENSCSAVG00000004620	-	85	72.321	ENSETEG00000017426	SMARCA1	84	72.321	Echinops_telfairi
ENSCSAVG00000004620	-	99	74.719	ENSEBUG00000001239	smarca5	98	72.084	Eptatretus_burgeri
ENSCSAVG00000004620	-	93	80.874	ENSEASG00005008218	SMARCA1	99	71.168	Equus_asinus_asinus
ENSCSAVG00000004620	-	100	74.165	ENSECAG00000012106	SMARCA1	92	73.089	Equus_caballus
ENSCSAVG00000004620	-	78	78.082	ENSEEUG00000014927	SMARCA1	81	71.523	Erinaceus_europaeus
ENSCSAVG00000004620	-	99	75.140	ENSELUG00000010515	smarca1	99	71.330	Esox_lucius
ENSCSAVG00000004620	-	100	74.165	ENSFCAG00000018496	SMARCA1	92	73.203	Felis_catus
ENSCSAVG00000004620	-	98	74.630	ENSFALG00000000209	SMARCA1	98	74.973	Ficedula_albicollis
ENSCSAVG00000004620	-	100	73.516	ENSFDAG00000009818	SMARCA1	95	72.912	Fukomys_damarensis
ENSCSAVG00000004620	-	99	75.391	ENSFHEG00000007687	smarca5	95	73.069	Fundulus_heteroclitus
ENSCSAVG00000004620	-	100	74.499	ENSGALG00000008431	SMARCA1	98	72.563	Gallus_gallus
ENSCSAVG00000004620	-	99	75.727	ENSGAFG00000017731	smarca5	96	73.366	Gambusia_affinis
ENSCSAVG00000004620	-	100	74.499	ENSGAGG00000023575	SMARCA1	99	74.101	Gopherus_agassizii
ENSCSAVG00000004620	-	88	76.667	ENSGGOG00000012841	-	91	69.388	Gorilla_gorilla
ENSCSAVG00000004620	-	100	73.497	ENSHGLG00000003080	SMARCA1	93	71.916	Heterocephalus_glaber_female
ENSCSAVG00000004620	-	100	73.497	ENSHGLG00100001102	SMARCA1	99	71.486	Heterocephalus_glaber_male
ENSCSAVG00000004620	-	99	76.286	ENSHCOG00000005458	smarca5	96	73.637	Hippocampus_comes
ENSCSAVG00000004620	-	99	75.615	ENSIPUG00000005229	SMARCA5	99	72.512	Ictalurus_punctatus
ENSCSAVG00000004620	-	99	75.812	ENSIPUG00000016905	Smarca1	99	74.616	Ictalurus_punctatus
ENSCSAVG00000004620	-	100	73.831	ENSSTOG00000014524	SMARCA1	96	72.032	Ictidomys_tridecemlineatus
ENSCSAVG00000004620	-	100	74.053	ENSJJAG00000002593	Smarca1	93	72.812	Jaculus_jaculus
ENSCSAVG00000004620	-	99	75.951	ENSKMAG00000003777	smarca5	96	73.161	Kryptolebias_marmoratus
ENSCSAVG00000004620	-	98	75.968	ENSLBEG00000013295	SMARCA1	100	78.715	Labrus_bergylta
ENSCSAVG00000004620	-	99	76.398	ENSLBEG00000018112	smarca5	98	73.307	Labrus_bergylta
ENSCSAVG00000004620	-	99	76.174	ENSLACG00000016697	SMARCA1	97	74.119	Latimeria_chalumnae
ENSCSAVG00000004620	-	99	76.174	ENSLOCG00000014591	smarca1	96	73.636	Lepisosteus_oculatus
ENSCSAVG00000004620	-	100	73.608	ENSLAFG00000000896	SMARCA1	98	72.396	Loxodonta_africana
ENSCSAVG00000004620	-	100	74.165	ENSMFAG00000002117	SMARCA1	94	73.931	Macaca_fascicularis
ENSCSAVG00000004620	-	100	74.165	ENSMMUG00000008818	SMARCA1	98	74.211	Macaca_mulatta
ENSCSAVG00000004620	-	100	74.165	ENSMNEG00000041768	SMARCA1	94	73.931	Macaca_nemestrina
ENSCSAVG00000004620	-	100	74.165	ENSMLEG00000043198	SMARCA1	92	73.069	Mandrillus_leucophaeus
ENSCSAVG00000004620	-	99	76.510	ENSMAMG00000014294	smarca5	96	73.909	Mastacembelus_armatus
ENSCSAVG00000004620	-	99	75.839	ENSMZEG00005009369	smarca5	98	72.576	Maylandia_zebra
ENSCSAVG00000004620	-	100	73.626	ENSMGAG00000007042	SMARCA1	98	72.421	Meleagris_gallopavo
ENSCSAVG00000004620	-	100	73.719	ENSMAUG00000008133	Smarca1	91	73.410	Mesocricetus_auratus
ENSCSAVG00000004620	-	100	74.165	ENSMICG00000015768	SMARCA1	92	73.183	Microcebus_murinus
ENSCSAVG00000004620	-	100	73.497	ENSMOCG00000009464	Smarca1	92	72.273	Microtus_ochrogaster
ENSCSAVG00000004620	-	99	74.468	ENSMMOG00000005547	smarca5	99	72.244	Mola_mola
ENSCSAVG00000004620	-	100	74.944	ENSMODG00000013187	-	95	73.891	Monodelphis_domestica
ENSCSAVG00000004620	-	99	75.951	ENSMALG00000002081	smarca5	98	73.562	Monopterus_albus
ENSCSAVG00000004620	-	100	73.497	MGP_CAROLIEiJ_G0033034	Smarca1	92	72.008	Mus_caroli
ENSCSAVG00000004620	-	100	73.497	ENSMUSG00000031099	Smarca1	92	72.008	Mus_musculus
ENSCSAVG00000004620	-	100	73.608	MGP_PahariEiJ_G0031579	Smarca1	93	71.586	Mus_pahari
ENSCSAVG00000004620	-	100	73.497	MGP_SPRETEiJ_G0034192	Smarca1	92	72.008	Mus_spretus
ENSCSAVG00000004620	-	100	73.407	ENSMPUG00000017423	SMARCA1	87	72.515	Mustela_putorius_furo
ENSCSAVG00000004620	-	100	72.807	ENSMLUG00000029614	SMARCA1	92	71.935	Myotis_lucifugus
ENSCSAVG00000004620	-	100	73.719	ENSNGAG00000006492	Smarca1	91	73.201	Nannospalax_galili
ENSCSAVG00000004620	-	99	75.839	ENSNBRG00000004463	smarca5	99	73.700	Neolamprologus_brichardi
ENSCSAVG00000004620	-	100	73.497	ENSNLEG00000015179	SMARCA1	95	73.229	Nomascus_leucogenys
ENSCSAVG00000004620	-	98	65.506	ENSMEUG00000008819	SMARCA1	99	65.859	Notamacropus_eugenii
ENSCSAVG00000004620	-	100	73.077	ENSODEG00000012163	SMARCA1	92	72.403	Octodon_degus
ENSCSAVG00000004620	-	99	75.839	ENSONIG00000009993	smarca5	98	72.576	Oreochromis_niloticus
ENSCSAVG00000004620	-	100	74.833	ENSOANG00000002862	SMARCA1	99	74.486	Ornithorhynchus_anatinus
ENSCSAVG00000004620	-	100	74.388	ENSOCUG00000001047	SMARCA1	92	73.544	Oryctolagus_cuniculus
ENSCSAVG00000004620	-	99	76.063	ENSORLG00000021998	smarca5	96	73.419	Oryzias_latipes
ENSCSAVG00000004620	-	99	76.063	ENSORLG00020017679	smarca5	97	73.013	Oryzias_latipes_hni
ENSCSAVG00000004620	-	99	76.063	ENSORLG00015017210	smarca5	96	73.439	Oryzias_latipes_hsok
ENSCSAVG00000004620	-	99	76.174	ENSOMEG00000000086	smarca5	96	73.538	Oryzias_melastigma
ENSCSAVG00000004620	-	100	73.516	ENSOGAG00000004399	SMARCA1	91	73.478	Otolemur_garnettii
ENSCSAVG00000004620	-	100	74.165	ENSOARG00000014638	SMARCA1	99	73.203	Ovis_aries
ENSCSAVG00000004620	-	100	74.165	ENSPPAG00000034647	SMARCA1	92	73.069	Pan_paniscus
ENSCSAVG00000004620	-	100	74.165	ENSPPRG00000008929	SMARCA1	92	73.203	Panthera_pardus
ENSCSAVG00000004620	-	100	72.350	ENSPTIG00000000915	SMARCA1	96	71.443	Panthera_tigris_altaica
ENSCSAVG00000004620	-	100	74.165	ENSPTRG00000049876	SMARCA1	91	74.086	Pan_troglodytes
ENSCSAVG00000004620	-	100	74.165	ENSPANG00000003871	SMARCA1	92	73.069	Papio_anubis
ENSCSAVG00000004620	-	99	75.056	ENSPKIG00000013411	smarca1	99	72.635	Paramormyrops_kingsleyae
ENSCSAVG00000004620	-	100	74.276	ENSPSIG00000010101	SMARCA1	99	73.895	Pelodiscus_sinensis
ENSCSAVG00000004620	-	100	73.608	ENSPEMG00000017503	Smarca1	91	73.201	Peromyscus_maniculatus_bairdii
ENSCSAVG00000004620	-	100	74.833	ENSPCIG00000015460	SMARCA1	99	72.228	Phascolarctos_cinereus
ENSCSAVG00000004620	-	99	75.839	ENSPFOG00000007649	smarca5	96	73.465	Poecilia_formosa
ENSCSAVG00000004620	-	99	75.839	ENSPLAG00000003363	smarca5	96	73.465	Poecilia_latipinna
ENSCSAVG00000004620	-	99	75.727	ENSPMEG00000019849	smarca5	96	73.366	Poecilia_mexicana
ENSCSAVG00000004620	-	99	75.727	ENSPREG00000023250	smarca5	96	73.366	Poecilia_reticulata
ENSCSAVG00000004620	-	100	71.269	ENSPPYG00000020703	SMARCA1	92	70.427	Pongo_abelii
ENSCSAVG00000004620	-	91	67.970	ENSPCOG00000020722	SMARCA1	96	67.760	Propithecus_coquereli
ENSCSAVG00000004620	-	92	77.500	ENSPVAG00000003805	SMARCA1	86	74.742	Pteropus_vampyrus
ENSCSAVG00000004620	-	70	80.443	ENSPNYG00000012299	smarca5	91	72.072	Pundamilia_nyererei
ENSCSAVG00000004620	-	100	73.385	ENSRNOG00000003762	Smarca1	92	72.382	Rattus_norvegicus
ENSCSAVG00000004620	-	100	74.276	ENSRROG00000034167	SMARCA1	92	73.171	Rhinopithecus_roxellana
ENSCSAVG00000004620	-	100	74.165	ENSSBOG00000020641	SMARCA1	99	73.081	Saimiri_boliviensis_boliviensis
ENSCSAVG00000004620	-	99	71.700	ENSSHAG00000013518	SMARCA1	99	70.389	Sarcophilus_harrisii
ENSCSAVG00000004620	-	99	76.063	ENSSFOG00015009043	smarca1	99	71.961	Scleropages_formosus
ENSCSAVG00000004620	-	100	75.056	ENSSFOG00015016794	smarca5	99	74.435	Scleropages_formosus
ENSCSAVG00000004620	-	99	75.951	ENSSMAG00000004801	smarca5	96	73.538	Scophthalmus_maximus
ENSCSAVG00000004620	-	99	75.615	ENSSDUG00000020690	smarca5	98	72.665	Seriola_dumerili
ENSCSAVG00000004620	-	99	75.615	ENSSLDG00000025190	smarca5	98	72.665	Seriola_lalandi_dorsalis
ENSCSAVG00000004620	-	84	83.908	ENSSARG00000000842	SMARCA1	77	83.908	Sorex_araneus
ENSCSAVG00000004620	-	99	75.112	ENSSPUG00000000590	SMARCA1	92	74.608	Sphenodon_punctatus
ENSCSAVG00000004620	-	99	76.174	ENSSPAG00000002894	smarca5	96	76.721	Stegastes_partitus
ENSCSAVG00000004620	-	100	73.942	ENSSSCG00000012649	SMARCA1	96	71.715	Sus_scrofa
ENSCSAVG00000004620	-	100	74.610	ENSTGUG00000003899	-	99	73.797	Taeniopygia_guttata
ENSCSAVG00000004620	-	99	75.839	ENSTRUG00000014094	smarca5	96	73.241	Takifugu_rubripes
ENSCSAVG00000004620	-	99	76.063	ENSTNIG00000017717	smarca5	95	73.207	Tetraodon_nigroviridis
ENSCSAVG00000004620	-	100	71.978	ENSTBEG00000014973	SMARCA1	90	73.422	Tupaia_belangeri
ENSCSAVG00000004620	-	100	70.110	ENSTTRG00000006168	SMARCA1	97	69.565	Tursiops_truncatus
ENSCSAVG00000004620	-	100	74.165	ENSUAMG00000020201	SMARCA1	93	72.462	Ursus_americanus
ENSCSAVG00000004620	-	100	70.267	ENSUMAG00000004073	SMARCA1	97	72.881	Ursus_maritimus
ENSCSAVG00000004620	-	74	77.311	ENSVPAG00000010492	-	74	77.152	Vicugna_pacos
ENSCSAVG00000004620	-	100	74.165	ENSVVUG00000008878	SMARCA1	99	74.109	Vulpes_vulpes
ENSCSAVG00000004620	-	100	74.778	ENSXETG00000001526	smarca1	99	73.166	Xenopus_tropicalis
ENSCSAVG00000004620	-	99	75.727	ENSXCOG00000011170	smarca5	99	73.366	Xiphophorus_couchianus
ENSCSAVG00000004620	-	99	75.727	ENSXMAG00000009678	smarca5	97	76.342	Xiphophorus_maculatus