EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000004783 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 28321 bases
Position: chrreftig_20:438117-466437
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000008029	CPSF_A	PF03178.15	3.3e-83	1	1
ENSCSAVP00000008028	CPSF_A	PF03178.15	1.5e-82	1	1
ENSCSAVP00000008027	CPSF_A	PF03178.15	3.6e-82	1	1
ENSCSAVP00000008031	CPSF_A	PF03178.15	1.4e-80	1	1
ENSCSAVP00000008030	CPSF_A	PF03178.15	3e-54	1	1
ENSCSAVP00000008032	CPSF_A	PF03178.15	1.1e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000008134	-	3431	-	ENSCSAVP00000008027	1079 (aa)	-	H2YRR7
ENSCSAVT00000008135	-	3108	-	ENSCSAVP00000008028	1035 (aa)	-	H2YRR8
ENSCSAVT00000008136	-	3201	-	ENSCSAVP00000008029	1066 (aa)	-	H2YRR9
ENSCSAVT00000008137	-	2874	-	ENSCSAVP00000008030	957 (aa)	-	H2YRS0
ENSCSAVT00000008138	-	3108	-	ENSCSAVP00000008031	1036 (aa)	-	H2YRS1
ENSCSAVT00000008139	-	2609	-	ENSCSAVP00000008032	835 (aa)	-	H2YRS2

Gene Model

Click here to download ENSCSAVG00000004783's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004783's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000004783	-	100	60.276	ENSG00000167986	DDB1	94	60.276	Homo_sapiens
ENSCSAVG00000004783	-	100	60.285	ENSAPOG00000005036	ddb1	93	61.297	Acanthochromis_polyacanthus
ENSCSAVG00000004783	-	100	60.276	ENSAMEG00000016518	DDB1	94	60.276	Ailuropoda_melanoleuca
ENSCSAVG00000004783	-	100	60.048	ENSACIG00000020624	ddb1	93	61.081	Amphilophus_citrinellus
ENSCSAVG00000004783	-	100	60.369	ENSAOCG00000003066	ddb1	94	60.369	Amphiprion_ocellaris
ENSCSAVG00000004783	-	100	60.369	ENSAPEG00000000092	ddb1	94	60.369	Amphiprion_percula
ENSCSAVG00000004783	-	100	60.285	ENSATEG00000020571	ddb1	92	60.273	Anabas_testudineus
ENSCSAVG00000004783	-	100	60.331	ENSAPLG00000007174	DDB1	95	60.331	Anas_platyrhynchos
ENSCSAVG00000004783	-	100	60.184	ENSACAG00000017758	DDB1	94	60.184	Anolis_carolinensis
ENSCSAVG00000004783	-	100	60.276	ENSANAG00000021878	DDB1	94	60.276	Aotus_nancymaae
ENSCSAVG00000004783	-	100	60.645	ENSACLG00000012401	ddb1	94	60.645	Astatotilapia_calliptera
ENSCSAVG00000004783	-	100	60.184	ENSBTAG00000021569	DDB1	88	60.184	Bos_taurus
ENSCSAVG00000004783	-	100	33.333	WBGene00010890	ddb-1	94	33.394	Caenorhabditis_elegans
ENSCSAVG00000004783	-	100	60.276	ENSCJAG00000019319	DDB1	94	60.276	Callithrix_jacchus
ENSCSAVG00000004783	-	100	60.276	ENSCAFG00000016264	DDB1	94	60.276	Canis_familiaris
ENSCSAVG00000004783	-	100	60.048	ENSCAFG00020012722	DDB1	93	60.609	Canis_lupus_dingo
ENSCSAVG00000004783	-	100	60.184	ENSCHIG00000014969	DDB1	94	60.184	Capra_hircus
ENSCSAVG00000004783	-	100	60.369	ENSTSYG00000008027	DDB1	94	60.369	Carlito_syrichta
ENSCSAVG00000004783	-	100	60.276	ENSCAPG00000010786	DDB1	96	60.276	Cavia_aperea
ENSCSAVG00000004783	-	100	60.276	ENSCPOG00000009956	DDB1	94	60.276	Cavia_porcellus
ENSCSAVG00000004783	-	100	60.276	ENSCCAG00000035883	DDB1	94	60.276	Cebus_capucinus
ENSCSAVG00000004783	-	100	58.592	ENSCATG00000044495	DDB1	94	58.684	Cercocebus_atys
ENSCSAVG00000004783	-	100	60.461	ENSCLAG00000004126	DDB1	94	60.461	Chinchilla_lanigera
ENSCSAVG00000004783	-	100	60.276	ENSCSAG00000006392	DDB1	94	60.276	Chlorocebus_sabaeus
ENSCSAVG00000004783	-	85	59.554	ENSCHOG00000011377	DDB1	83	54.717	Choloepus_hoffmanni
ENSCSAVG00000004783	-	100	60.589	ENSCPBG00000017728	DDB1	94	60.589	Chrysemys_picta_bellii
ENSCSAVG00000004783	-	100	86.372	ENSCING00000007437	-	94	86.372	Ciona_intestinalis
ENSCSAVG00000004783	-	100	60.276	ENSCANG00000019948	DDB1	94	60.276	Colobus_angolensis_palliatus
ENSCSAVG00000004783	-	100	60.276	ENSCGRG00001016599	Ddb1	94	60.276	Cricetulus_griseus_chok1gshd
ENSCSAVG00000004783	-	100	60.276	ENSCGRG00000013427	Ddb1	94	60.276	Cricetulus_griseus_crigri
ENSCSAVG00000004783	-	100	60.048	ENSCSEG00000012499	ddb1	91	60.675	Cynoglossus_semilaevis
ENSCSAVG00000004783	-	100	60.285	ENSCVAG00000019531	ddb1	93	60.609	Cyprinodon_variegatus
ENSCSAVG00000004783	-	100	58.624	ENSDARG00000074431	ddb1	94	58.899	Danio_rerio
ENSCSAVG00000004783	-	100	60.166	ENSDNOG00000014884	DDB1	91	60.707	Dasypus_novemcinctus
ENSCSAVG00000004783	-	84	59.060	ENSDORG00000000127	Ddb1	93	58.228	Dipodomys_ordii
ENSCSAVG00000004783	-	99	52.078	FBgn0260962	pic	94	52.078	Drosophila_melanogaster
ENSCSAVG00000004783	-	63	72.059	ENSETEG00000001053	-	65	62.903	Echinops_telfairi
ENSCSAVG00000004783	-	99	57.933	ENSEBUG00000014593	ddb1	90	58.223	Eptatretus_burgeri
ENSCSAVG00000004783	-	100	60.184	ENSEASG00005008184	DDB1	94	60.184	Equus_asinus_asinus
ENSCSAVG00000004783	-	100	60.184	ENSECAG00000012136	DDB1	94	60.184	Equus_caballus
ENSCSAVG00000004783	-	88	53.420	ENSEEUG00000003194	DDB1	79	56.198	Erinaceus_europaeus
ENSCSAVG00000004783	-	100	60.737	ENSELUG00000023868	ddb1	94	60.737	Esox_lucius
ENSCSAVG00000004783	-	100	60.276	ENSFCAG00000029716	DDB1	94	60.276	Felis_catus
ENSCSAVG00000004783	-	100	60.331	ENSFALG00000011981	DDB1	94	60.331	Ficedula_albicollis
ENSCSAVG00000004783	-	100	60.369	ENSFDAG00000005128	DDB1	94	60.369	Fukomys_damarensis
ENSCSAVG00000004783	-	99	58.169	ENSFHEG00000022133	ddb1	91	62.251	Fundulus_heteroclitus
ENSCSAVG00000004783	-	88	67.550	ENSGMOG00000019386	ddb1	94	67.550	Gadus_morhua
ENSCSAVG00000004783	-	100	60.313	ENSGALG00000042333	DDB1	94	60.313	Gallus_gallus
ENSCSAVG00000004783	-	100	60.404	ENSGAFG00000013142	ddb1	93	60.707	Gambusia_affinis
ENSCSAVG00000004783	-	100	60.048	ENSGACG00000017182	ddb1	93	60.117	Gasterosteus_aculeatus
ENSCSAVG00000004783	-	100	60.589	ENSGAGG00000014124	DDB1	99	60.589	Gopherus_agassizii
ENSCSAVG00000004783	-	100	60.276	ENSGGOG00000004052	DDB1	94	60.276	Gorilla_gorilla
ENSCSAVG00000004783	-	100	60.645	ENSHBUG00000008873	ddb1	99	60.645	Haplochromis_burtoni
ENSCSAVG00000004783	-	100	60.184	ENSHGLG00000018430	DDB1	94	60.184	Heterocephalus_glaber_female
ENSCSAVG00000004783	-	100	59.447	ENSHGLG00100014475	DDB1	94	59.447	Heterocephalus_glaber_male
ENSCSAVG00000004783	-	100	60.048	ENSHCOG00000018670	ddb1	92	60.511	Hippocampus_comes
ENSCSAVG00000004783	-	100	60.000	ENSIPUG00000005612	DDB1	94	60.000	Ictalurus_punctatus
ENSCSAVG00000004783	-	100	60.276	ENSSTOG00000007552	DDB1	94	60.276	Ictidomys_tridecemlineatus
ENSCSAVG00000004783	-	100	60.092	ENSJJAG00000017769	Ddb1	94	60.092	Jaculus_jaculus
ENSCSAVG00000004783	-	100	60.166	ENSKMAG00000002315	ddb1	93	60.413	Kryptolebias_marmoratus
ENSCSAVG00000004783	-	100	60.285	ENSLBEG00000017065	ddb1	94	61.297	Labrus_bergylta
ENSCSAVG00000004783	-	100	60.148	ENSLACG00000017611	DDB1	94	60.148	Latimeria_chalumnae
ENSCSAVG00000004783	-	92	51.633	ENSLOCG00000000012	ddb1	89	56.656	Lepisosteus_oculatus
ENSCSAVG00000004783	-	100	60.092	ENSLAFG00000011513	DDB1	94	60.092	Loxodonta_africana
ENSCSAVG00000004783	-	100	60.276	ENSMFAG00000042035	DDB1	94	60.276	Macaca_fascicularis
ENSCSAVG00000004783	-	100	60.048	ENSMMUG00000002691	DDB1	94	60.260	Macaca_mulatta
ENSCSAVG00000004783	-	100	60.276	ENSMNEG00000031559	DDB1	94	60.276	Macaca_nemestrina
ENSCSAVG00000004783	-	100	60.276	ENSMLEG00000044136	DDB1	94	60.276	Mandrillus_leucophaeus
ENSCSAVG00000004783	-	100	60.553	ENSMAMG00000014372	ddb1	94	60.553	Mastacembelus_armatus
ENSCSAVG00000004783	-	100	60.645	ENSMZEG00005013835	ddb1	94	60.645	Maylandia_zebra
ENSCSAVG00000004783	-	100	60.147	ENSMGAG00000004990	DDB1	100	60.147	Meleagris_gallopavo
ENSCSAVG00000004783	-	100	60.276	ENSMAUG00000012926	Ddb1	94	60.276	Mesocricetus_auratus
ENSCSAVG00000004783	-	100	60.276	ENSMICG00000013703	DDB1	94	60.276	Microcebus_murinus
ENSCSAVG00000004783	-	100	60.276	ENSMOCG00000020499	Ddb1	94	60.276	Microtus_ochrogaster
ENSCSAVG00000004783	-	100	60.285	ENSMMOG00000001758	ddb1	93	61.297	Mola_mola
ENSCSAVG00000004783	-	95	55.040	ENSMODG00000020353	DDB1	84	59.572	Monodelphis_domestica
ENSCSAVG00000004783	-	100	60.369	ENSMALG00000014071	ddb1	94	60.369	Monopterus_albus
ENSCSAVG00000004783	-	100	60.184	MGP_CAROLIEiJ_G0022695	Ddb1	94	60.184	Mus_caroli
ENSCSAVG00000004783	-	100	60.184	ENSMUSG00000024740	Ddb1	94	60.184	Mus_musculus
ENSCSAVG00000004783	-	100	60.184	MGP_PahariEiJ_G0014189	Ddb1	94	60.184	Mus_pahari
ENSCSAVG00000004783	-	100	60.184	MGP_SPRETEiJ_G0023609	Ddb1	94	60.184	Mus_spretus
ENSCSAVG00000004783	-	100	59.215	ENSMPUG00000014200	DDB1	94	58.157	Mustela_putorius_furo
ENSCSAVG00000004783	-	100	60.369	ENSMLUG00000013232	DDB1	94	60.369	Myotis_lucifugus
ENSCSAVG00000004783	-	100	60.184	ENSNGAG00000009384	Ddb1	94	60.184	Nannospalax_galili
ENSCSAVG00000004783	-	100	60.645	ENSNBRG00000019581	ddb1	94	60.645	Neolamprologus_brichardi
ENSCSAVG00000004783	-	100	58.303	ENSNLEG00000002022	DDB1	94	58.303	Nomascus_leucogenys
ENSCSAVG00000004783	-	94	60.169	ENSMEUG00000001099	DDB1	87	60.563	Notamacropus_eugenii
ENSCSAVG00000004783	-	95	58.427	ENSOPRG00000008254	DDB1	90	55.694	Ochotona_princeps
ENSCSAVG00000004783	-	100	60.369	ENSODEG00000002419	DDB1	94	60.369	Octodon_degus
ENSCSAVG00000004783	-	100	60.645	ENSONIG00000005804	ddb1	94	60.645	Oreochromis_niloticus
ENSCSAVG00000004783	-	96	60.478	ENSOANG00000004897	DDB1	99	60.478	Ornithorhynchus_anatinus
ENSCSAVG00000004783	-	100	60.276	ENSOCUG00000001667	DDB1	94	60.276	Oryctolagus_cuniculus
ENSCSAVG00000004783	-	100	60.166	ENSORLG00000001399	ddb1	91	60.953	Oryzias_latipes
ENSCSAVG00000004783	-	100	60.166	ENSORLG00020001277	ddb1	91	59.632	Oryzias_latipes_hni
ENSCSAVG00000004783	-	100	60.166	ENSORLG00015002080	ddb1	92	60.838	Oryzias_latipes_hsok
ENSCSAVG00000004783	-	100	60.404	ENSOMEG00000006181	ddb1	93	59.480	Oryzias_melastigma
ENSCSAVG00000004783	-	100	60.184	ENSOGAG00000016103	DDB1	94	60.184	Otolemur_garnettii
ENSCSAVG00000004783	-	100	59.929	ENSOARG00000011716	DDB1	91	59.981	Ovis_aries
ENSCSAVG00000004783	-	100	60.276	ENSPPAG00000035343	DDB1	94	60.276	Pan_paniscus
ENSCSAVG00000004783	-	100	60.276	ENSPPRG00000013300	DDB1	94	60.276	Panthera_pardus
ENSCSAVG00000004783	-	100	60.276	ENSPTIG00000006909	DDB1	94	60.276	Panthera_tigris_altaica
ENSCSAVG00000004783	-	100	60.276	ENSPTRG00000003737	DDB1	94	60.276	Pan_troglodytes
ENSCSAVG00000004783	-	100	60.276	ENSPANG00000000242	DDB1	94	60.276	Papio_anubis
ENSCSAVG00000004783	-	100	60.761	ENSPKIG00000019213	ddb1	88	60.904	Paramormyrops_kingsleyae
ENSCSAVG00000004783	-	100	60.294	ENSPSIG00000013275	DDB1	95	60.294	Pelodiscus_sinensis
ENSCSAVG00000004783	-	100	60.523	ENSPMGG00000021179	ddb1	93	61.514	Periophthalmus_magnuspinnatus
ENSCSAVG00000004783	-	100	60.276	ENSPEMG00000012241	Ddb1	94	60.276	Peromyscus_maniculatus_bairdii
ENSCSAVG00000004783	-	100	58.977	ENSPMAG00000008479	ddb1	95	60.427	Petromyzon_marinus
ENSCSAVG00000004783	-	100	60.276	ENSPCIG00000002643	DDB1	94	60.276	Phascolarctos_cinereus
ENSCSAVG00000004783	-	100	60.388	ENSPFOG00000002768	ddb1	94	60.388	Poecilia_formosa
ENSCSAVG00000004783	-	100	60.444	ENSPLAG00000017227	ddb1	94	60.444	Poecilia_latipinna
ENSCSAVG00000004783	-	100	60.444	ENSPMEG00000011398	ddb1	94	60.444	Poecilia_mexicana
ENSCSAVG00000004783	-	100	60.285	ENSPREG00000004440	ddb1	93	59.904	Poecilia_reticulata
ENSCSAVG00000004783	-	100	57.890	ENSPPYG00000003193	DDB1	94	57.890	Pongo_abelii
ENSCSAVG00000004783	-	89	54.043	ENSPCAG00000011040	DDB1	79	57.856	Procavia_capensis
ENSCSAVG00000004783	-	100	59.464	ENSPCOG00000015176	DDB1	94	59.464	Propithecus_coquereli
ENSCSAVG00000004783	-	100	60.092	ENSPVAG00000003847	DDB1	94	60.092	Pteropus_vampyrus
ENSCSAVG00000004783	-	51	60.284	ENSPNYG00000010482	ddb1	100	60.284	Pundamilia_nyererei
ENSCSAVG00000004783	-	100	60.048	ENSPNAG00000006635	ddb1	91	60.413	Pygocentrus_nattereri
ENSCSAVG00000004783	-	100	60.276	ENSRNOG00000020715	Ddb1	94	60.276	Rattus_norvegicus
ENSCSAVG00000004783	-	100	60.276	ENSRBIG00000033611	DDB1	94	60.276	Rhinopithecus_bieti
ENSCSAVG00000004783	-	100	60.276	ENSRROG00000041407	DDB1	94	60.276	Rhinopithecus_roxellana
ENSCSAVG00000004783	-	100	60.276	ENSSBOG00000019775	DDB1	94	60.276	Saimiri_boliviensis_boliviensis
ENSCSAVG00000004783	-	100	58.595	ENSSHAG00000011600	DDB1	100	58.764	Sarcophilus_harrisii
ENSCSAVG00000004783	-	100	60.523	ENSSFOG00015011151	ddb1	90	60.806	Scleropages_formosus
ENSCSAVG00000004783	-	100	60.461	ENSSMAG00000009495	ddb1	94	60.461	Scophthalmus_maximus
ENSCSAVG00000004783	-	100	60.369	ENSSDUG00000004642	ddb1	94	60.369	Seriola_dumerili
ENSCSAVG00000004783	-	100	60.369	ENSSLDG00000015804	ddb1	94	60.369	Seriola_lalandi_dorsalis
ENSCSAVG00000004783	-	68	68.571	ENSSARG00000003290	-	62	68.571	Sorex_araneus
ENSCSAVG00000004783	-	100	60.681	ENSSPUG00000019338	DDB1	94	60.681	Sphenodon_punctatus
ENSCSAVG00000004783	-	100	60.285	ENSSPAG00000009888	ddb1	93	60.609	Stegastes_partitus
ENSCSAVG00000004783	-	100	59.810	ENSSSCG00000013094	DDB1	94	59.797	Sus_scrofa
ENSCSAVG00000004783	-	100	60.221	ENSTGUG00000006414	DDB1	94	60.221	Taeniopygia_guttata
ENSCSAVG00000004783	-	100	60.285	ENSTRUG00000016682	ddb1	92	60.511	Takifugu_rubripes
ENSCSAVG00000004783	-	99	54.634	ENSTNIG00000009565	ddb1	99	57.087	Tetraodon_nigroviridis
ENSCSAVG00000004783	-	94	58.430	ENSTTRG00000011055	DDB1	90	58.430	Tursiops_truncatus
ENSCSAVG00000004783	-	100	60.048	ENSUAMG00000017793	DDB1	89	59.732	Ursus_americanus
ENSCSAVG00000004783	-	100	60.048	ENSUMAG00000011788	DDB1	93	59.732	Ursus_maritimus
ENSCSAVG00000004783	-	100	56.480	ENSVPAG00000007963	DDB1	87	57.143	Vicugna_pacos
ENSCSAVG00000004783	-	100	60.276	ENSVVUG00000004987	DDB1	94	60.700	Vulpes_vulpes
ENSCSAVG00000004783	-	100	59.375	ENSXETG00000008820	ddb1	94	59.375	Xenopus_tropicalis
ENSCSAVG00000004783	-	100	60.404	ENSXCOG00000013956	ddb1	93	61.405	Xiphophorus_couchianus
ENSCSAVG00000004783	-	100	60.404	ENSXMAG00000000022	ddb1	93	60.707	Xiphophorus_maculatus