EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSCSAVG00000004784 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
-
Gene Type
protein_coding
Species
Ciona_savignyi
Status
putative
Strand
Plus strand
Length
9387 bases
Position
chrreftig_194:65387-74773
Accession
-
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSAVP00000008038Tudor-knotPF11717.81.1e-1911
ENSCSAVP00000008037Tudor-knotPF11717.81.2e-1911
ENSCSAVP00000008033Tudor-knotPF11717.81.2e-1911
ENSCSAVP00000008035Tudor-knotPF11717.81.2e-1911
ENSCSAVP00000008034Tudor-knotPF11717.81.5e-1911
ENSCSAVP00000008036Tudor-knotPF11717.81.5e-1911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSAVT00000008141-1648-ENSCSAVP00000008034509 (aa)-H2YRS4
ENSCSAVT00000008140-1645-ENSCSAVP00000008033444 (aa)-H2YRS3
ENSCSAVT00000008143-1607-ENSCSAVP00000008036509 (aa)-H2YRS6
ENSCSAVT00000008142-1661-ENSCSAVP00000008035514 (aa)-H2YRS5
ENSCSAVT00000008145-1473-ENSCSAVP00000008038428 (aa)-H2YRS8
ENSCSAVT00000008144-1505-ENSCSAVP00000008037444 (aa)-H2YRS7
Gene Model
Click here to download ENSCSAVG00000004784's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004784's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSAVG00000004784-10077.451ENSAPOG00000016436kat5b8977.023Acanthochromis_polyacanthus
ENSCSAVG00000004784-9966.300ENSACIG00000010425kat5b9776.699Amphilophus_citrinellus
ENSCSAVG00000004784-10077.451ENSAOCG00000014287kat5b9960.311Amphiprion_ocellaris
ENSCSAVG00000004784-10077.451ENSAPEG00000001944kat5b9860.542Amphiprion_percula
ENSCSAVG00000004784-9875.710ENSATEG00000016047kat5b8575.710Anabas_testudineus
ENSCSAVG00000004784-9177.451ENSACLG00000015105kat5b9959.231Astatotilapia_calliptera
ENSCSAVG00000004784-9975.321ENSAMXG00000009091kat5b9275.321Astyanax_mexicanus
ENSCSAVG00000004784-10051.613WBGene00007029mys-19353.652Caenorhabditis_elegans
ENSCSAVG00000004784-9276.471ENSCSEG00000014541kat5b9876.052Cynoglossus_semilaevis
ENSCSAVG00000004784-9873.512ENSCVAG00000012685kat5b9369.061Cyprinodon_variegatus
ENSCSAVG00000004784-9872.189ENSDARG00000045951kat5b9072.189Danio_rerio
ENSCSAVG00000004784-9871.893ENSDARG00000004587kat5b8871.893Danio_rerio
ENSCSAVG00000004784-9073.841FBgn0026080Tip609653.160Drosophila_melanogaster
ENSCSAVG00000004784-6477.249ENSEBUG00000001775kat5b9955.108Eptatretus_burgeri
ENSCSAVG00000004784-9277.451ENSELUG00000016941kat5b9974.383Esox_lucius
ENSCSAVG00000004784-9975.394ENSFHEG00000003516kat5b8175.394Fundulus_heteroclitus
ENSCSAVG00000004784-9975.710ENSGAFG00000004081kat5b9965.044Gambusia_affinis
ENSCSAVG00000004784-9873.810ENSGACG00000020408kat5b9963.983Gasterosteus_aculeatus
ENSCSAVG00000004784-9177.451ENSHBUG00000023213kat5b9777.023Haplochromis_burtoni
ENSCSAVG00000004784-9277.124ENSHCOG00000002064kat5b8477.124Hippocampus_comes
ENSCSAVG00000004784-10066.667ENSIPUG00000014489kat5b9676.375Ictalurus_punctatus
ENSCSAVG00000004784-9976.025ENSKMAG00000009020kat5b8276.025Kryptolebias_marmoratus
ENSCSAVG00000004784-10067.053ENSLBEG00000011107-9573.926Labrus_bergylta
ENSCSAVG00000004784-9277.124ENSLBEG00000024629-9573.926Labrus_bergylta
ENSCSAVG00000004784-10077.124ENSMAMG00000016643kat5b9964.043Mastacembelus_armatus
ENSCSAVG00000004784-9177.451ENSMZEG00005016654kat5b9856.000Maylandia_zebra
ENSCSAVG00000004784-9874.455ENSMMOG00000016639kat5b8774.455Mola_mola
ENSCSAVG00000004784-9970.940ENSMALG00000017235kat5b8870.940Monopterus_albus
ENSCSAVG00000004784-7455.041ENSODEG00000016524-9155.041Octodon_degus
ENSCSAVG00000004784-9177.451ENSONIG00000005359kat5b9957.519Oreochromis_niloticus
ENSCSAVG00000004784-9376.144ENSORLG00000007458kat5b9956.093Oryzias_latipes
ENSCSAVG00000004784-9376.144ENSORLG00020004495kat5b8674.603Oryzias_latipes_hni
ENSCSAVG00000004784-9376.144ENSORLG00015009730kat5b9956.093Oryzias_latipes_hsok
ENSCSAVG00000004784-9376.471ENSOMEG00000002350kat5b9958.789Oryzias_melastigma
ENSCSAVG00000004784-10076.797ENSPKIG00000019383kat5b8576.797Paramormyrops_kingsleyae
ENSCSAVG00000004784-9276.471ENSPMGG00000020103kat5b9957.356Periophthalmus_magnuspinnatus
ENSCSAVG00000004784-9275.974ENSPMAG00000008957kat5b9958.601Petromyzon_marinus
ENSCSAVG00000004784-9975.394ENSPFOG00000010293kat5b9959.345Poecilia_formosa
ENSCSAVG00000004784-9975.394ENSPLAG00000015158kat5b8175.394Poecilia_latipinna
ENSCSAVG00000004784-9975.394ENSPMEG00000008824kat5b9176.375Poecilia_mexicana
ENSCSAVG00000004784-9975.394ENSPREG00000022986kat5b8175.394Poecilia_reticulata
ENSCSAVG00000004784-8977.451ENSPNYG00000017128kat5b9959.423Pundamilia_nyererei
ENSCSAVG00000004784-9976.603ENSPNAG00000003741-8576.603Pygocentrus_nattereri
ENSCSAVG00000004784-10073.913ENSPNAG00000022600-9868.508Pygocentrus_nattereri
ENSCSAVG00000004784-8777.451ENSSHAG00000001928-10059.838Sarcophilus_harrisii
ENSCSAVG00000004784-9975.962ENSSFOG00015005779kat59768.956Scleropages_formosus
ENSCSAVG00000004784-9277.451ENSSMAG00000013982kat5b9764.059Scophthalmus_maximus
ENSCSAVG00000004784-10077.451ENSSDUG00000010863kat5b8077.451Seriola_dumerili
ENSCSAVG00000004784-9277.451ENSSLDG00000018594kat5b7469.944Seriola_lalandi_dorsalis
ENSCSAVG00000004784-9277.451ENSSPAG00000016282kat5b9962.810Stegastes_partitus
ENSCSAVG00000004784-9376.797ENSTRUG00000016643kat5b9958.412Takifugu_rubripes
ENSCSAVG00000004784-9276.547ENSTNIG00000011743kat5b9957.974Tetraodon_nigroviridis
ENSCSAVG00000004784-9173.941ENSUMAG00000010712-9956.970Ursus_maritimus
ENSCSAVG00000004784-8174.704ENSXETG00000020586kat59952.281Xenopus_tropicalis
ENSCSAVG00000004784-9975.710ENSXMAG00000005173kat5b9963.125Xiphophorus_maculatus

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