EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000004851 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 10935 bases
Position: chrreftig_17:559163-570097
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000008153	Suf	PF05843.14	2.3e-80	1	1
ENSCSAVP00000008155	Suf	PF05843.14	6.7e-78	1	1
ENSCSAVP00000008156	Suf	PF05843.14	8.7e-73	1	1
ENSCSAVP00000008154	Suf	PF05843.14	2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000008261	-	2541	-	ENSCSAVP00000008153	750 (aa)	-	H2YS43
ENSCSAVT00000008262	-	794	-	ENSCSAVP00000008154	130 (aa)	-	H2YS44
ENSCSAVT00000008263	-	2417	-	ENSCSAVP00000008155	710 (aa)	-	H2YS45
ENSCSAVT00000008264	-	2239	-	ENSCSAVP00000008156	708 (aa)	-	H2YS46

Gene Model

Click here to download ENSCSAVG00000004851's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004851's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000004851	-	100	61.785	ENSG00000176102	CSTF3	98	61.785	Homo_sapiens
ENSCSAVG00000004851	-	100	61.259	ENSAPOG00000014054	cstf3	98	61.259	Acanthochromis_polyacanthus
ENSCSAVG00000004851	-	100	61.785	ENSAMEG00000007187	CSTF3	98	61.785	Ailuropoda_melanoleuca
ENSCSAVG00000004851	-	89	57.571	ENSACIG00000005539	cstf3	100	57.571	Amphilophus_citrinellus
ENSCSAVG00000004851	-	100	61.119	ENSAOCG00000010930	cstf3	98	61.119	Amphiprion_ocellaris
ENSCSAVG00000004851	-	100	61.119	ENSAPEG00000007903	cstf3	98	61.119	Amphiprion_percula
ENSCSAVG00000004851	-	100	61.399	ENSATEG00000000190	cstf3	98	61.399	Anabas_testudineus
ENSCSAVG00000004851	-	100	61.925	ENSAPLG00000007217	CSTF3	99	61.925	Anas_platyrhynchos
ENSCSAVG00000004851	-	100	61.711	ENSACAG00000002823	CSTF3	98	61.711	Anolis_carolinensis
ENSCSAVG00000004851	-	100	61.785	ENSANAG00000020699	CSTF3	94	69.460	Aotus_nancymaae
ENSCSAVG00000004851	-	99	61.538	ENSACLG00000007820	cstf3	98	61.453	Astatotilapia_calliptera
ENSCSAVG00000004851	-	100	60.253	ENSAMXG00000014198	cstf3	98	60.534	Astyanax_mexicanus
ENSCSAVG00000004851	-	100	61.785	ENSBTAG00000008617	CSTF3	100	62.190	Bos_taurus
ENSCSAVG00000004851	-	99	47.425	WBGene00006307	suf-1	99	47.483	Caenorhabditis_elegans
ENSCSAVG00000004851	-	100	61.785	ENSCJAG00000005533	CSTF3	100	61.635	Callithrix_jacchus
ENSCSAVG00000004851	-	100	61.785	ENSCAFG00000007264	CSTF3	98	61.785	Canis_familiaris
ENSCSAVG00000004851	-	100	61.785	ENSCAFG00020002715	CSTF3	98	61.785	Canis_lupus_dingo
ENSCSAVG00000004851	-	99	60.784	ENSCHIG00000016418	CSTF3	100	61.635	Capra_hircus
ENSCSAVG00000004851	-	100	61.785	ENSTSYG00000000451	CSTF3	98	69.799	Carlito_syrichta
ENSCSAVG00000004851	-	80	67.849	ENSCAPG00000010958	CSTF3	95	67.849	Cavia_aperea
ENSCSAVG00000004851	-	100	61.925	ENSCPOG00000005545	CSTF3	99	61.925	Cavia_porcellus
ENSCSAVG00000004851	-	100	61.785	ENSCCAG00000024790	CSTF3	95	69.799	Cebus_capucinus
ENSCSAVG00000004851	-	100	61.785	ENSCATG00000007080	CSTF3	100	61.635	Cercocebus_atys
ENSCSAVG00000004851	-	100	61.785	ENSCLAG00000016179	CSTF3	98	61.785	Chinchilla_lanigera
ENSCSAVG00000004851	-	79	70.076	ENSCHOG00000002497	CSTF3	79	70.076	Choloepus_hoffmanni
ENSCSAVG00000004851	-	100	62.204	ENSCPBG00000006753	CSTF3	98	62.204	Chrysemys_picta_bellii
ENSCSAVG00000004851	-	100	87.904	ENSCING00000006401	-	98	87.904	Ciona_intestinalis
ENSCSAVG00000004851	-	100	61.785	ENSCANG00000035468	CSTF3	100	61.635	Colobus_angolensis_palliatus
ENSCSAVG00000004851	-	100	61.367	ENSCGRG00001014773	Cstf3	99	61.367	Cricetulus_griseus_chok1gshd
ENSCSAVG00000004851	-	100	61.367	ENSCGRG00000004142	Cstf3	99	61.367	Cricetulus_griseus_crigri
ENSCSAVG00000004851	-	100	61.322	ENSCSEG00000014283	cstf3	98	61.322	Cynoglossus_semilaevis
ENSCSAVG00000004851	-	100	61.322	ENSCVAG00000019739	cstf3	98	61.322	Cyprinodon_variegatus
ENSCSAVG00000004851	-	100	61.376	ENSDARG00000018904	cstf3	98	61.376	Danio_rerio
ENSCSAVG00000004851	-	100	61.925	ENSDNOG00000007366	CSTF3	98	61.925	Dasypus_novemcinctus
ENSCSAVG00000004851	-	100	56.764	ENSDORG00000005898	Cstf3	99	56.764	Dipodomys_ordii
ENSCSAVG00000004851	-	99	52.552	FBgn0003559	su(f)	97	52.552	Drosophila_melanogaster
ENSCSAVG00000004851	-	91	57.580	ENSETEG00000017097	CSTF3	90	57.580	Echinops_telfairi
ENSCSAVG00000004851	-	85	57.895	ENSEBUG00000015459	cstf3	96	57.895	Eptatretus_burgeri
ENSCSAVG00000004851	-	100	60.948	ENSEASG00005019884	CSTF3	96	69.575	Equus_asinus_asinus
ENSCSAVG00000004851	-	100	60.948	ENSECAG00000023338	CSTF3	96	69.575	Equus_caballus
ENSCSAVG00000004851	-	100	58.159	ENSEEUG00000015167	CSTF3	98	58.159	Erinaceus_europaeus
ENSCSAVG00000004851	-	100	61.885	ENSELUG00000023393	cstf3	98	61.885	Esox_lucius
ENSCSAVG00000004851	-	100	61.925	ENSFCAG00000030711	CSTF3	98	61.925	Felis_catus
ENSCSAVG00000004851	-	92	63.830	ENSFALG00000010764	CSTF3	100	61.934	Ficedula_albicollis
ENSCSAVG00000004851	-	100	61.925	ENSFDAG00000012082	CSTF3	98	61.925	Fukomys_damarensis
ENSCSAVG00000004851	-	100	61.322	ENSFHEG00000020623	cstf3	98	61.322	Fundulus_heteroclitus
ENSCSAVG00000004851	-	100	60.644	ENSGMOG00000012275	cstf3	98	60.644	Gadus_morhua
ENSCSAVG00000004851	-	100	62.064	ENSGALG00000011685	CSTF3	98	62.064	Gallus_gallus
ENSCSAVG00000004851	-	100	61.322	ENSGAFG00000002181	cstf3	98	61.322	Gambusia_affinis
ENSCSAVG00000004851	-	100	61.322	ENSGACG00000015997	cstf3	98	61.322	Gasterosteus_aculeatus
ENSCSAVG00000004851	-	100	62.204	ENSGAGG00000006200	CSTF3	98	62.204	Gopherus_agassizii
ENSCSAVG00000004851	-	100	57.420	ENSGGOG00000026591	CSTF3	95	66.443	Gorilla_gorilla
ENSCSAVG00000004851	-	99	61.538	ENSHBUG00000016656	cstf3	98	61.453	Haplochromis_burtoni
ENSCSAVG00000004851	-	100	61.785	ENSHGLG00000017834	CSTF3	98	61.785	Heterocephalus_glaber_female
ENSCSAVG00000004851	-	100	61.785	ENSHGLG00100018042	CSTF3	99	61.785	Heterocephalus_glaber_male
ENSCSAVG00000004851	-	100	60.140	ENSHCOG00000015218	cstf3	98	60.140	Hippocampus_comes
ENSCSAVG00000004851	-	100	62.219	ENSIPUG00000013170	CSTF3	99	62.219	Ictalurus_punctatus
ENSCSAVG00000004851	-	100	61.785	ENSSTOG00000013306	CSTF3	98	61.785	Ictidomys_tridecemlineatus
ENSCSAVG00000004851	-	100	56.443	ENSJJAG00000018430	Cstf3	94	67.702	Jaculus_jaculus
ENSCSAVG00000004851	-	100	61.181	ENSKMAG00000010916	cstf3	98	61.181	Kryptolebias_marmoratus
ENSCSAVG00000004851	-	100	61.181	ENSLBEG00000002306	cstf3	99	61.181	Labrus_bergylta
ENSCSAVG00000004851	-	100	61.765	ENSLACG00000017296	CSTF3	98	61.765	Latimeria_chalumnae
ENSCSAVG00000004851	-	100	61.732	ENSLOCG00000004415	cstf3	98	61.732	Lepisosteus_oculatus
ENSCSAVG00000004851	-	100	61.506	ENSLAFG00000008712	CSTF3	98	61.506	Loxodonta_africana
ENSCSAVG00000004851	-	100	61.785	ENSMFAG00000029516	CSTF3	94	68.456	Macaca_fascicularis
ENSCSAVG00000004851	-	100	61.785	ENSMMUG00000002542	CSTF3	98	61.785	Macaca_mulatta
ENSCSAVG00000004851	-	100	61.785	ENSMNEG00000021807	CSTF3	100	61.635	Macaca_nemestrina
ENSCSAVG00000004851	-	100	61.785	ENSMLEG00000039594	CSTF3	97	68.456	Mandrillus_leucophaeus
ENSCSAVG00000004851	-	100	61.538	ENSMAMG00000020423	cstf3	98	61.538	Mastacembelus_armatus
ENSCSAVG00000004851	-	100	60.615	ENSMZEG00005012082	cstf3	99	60.615	Maylandia_zebra
ENSCSAVG00000004851	-	100	62.064	ENSMGAG00000001383	CSTF3	99	61.806	Meleagris_gallopavo
ENSCSAVG00000004851	-	100	61.367	ENSMAUG00000002487	Cstf3	98	61.367	Mesocricetus_auratus
ENSCSAVG00000004851	-	100	61.925	ENSMICG00000004784	CSTF3	100	61.792	Microcebus_murinus
ENSCSAVG00000004851	-	100	61.367	ENSMOCG00000017583	Cstf3	98	61.367	Microtus_ochrogaster
ENSCSAVG00000004851	-	100	61.181	ENSMMOG00000016026	cstf3	94	61.181	Mola_mola
ENSCSAVG00000004851	-	100	59.720	ENSMODG00000025205	-	98	59.720	Monodelphis_domestica
ENSCSAVG00000004851	-	100	61.925	ENSMODG00000009745	-	98	61.925	Monodelphis_domestica
ENSCSAVG00000004851	-	100	61.119	ENSMALG00000012050	cstf3	98	61.119	Monopterus_albus
ENSCSAVG00000004851	-	100	61.367	MGP_CAROLIEiJ_G0024026	Cstf3	98	61.367	Mus_caroli
ENSCSAVG00000004851	-	100	61.367	ENSMUSG00000027176	Cstf3	98	61.367	Mus_musculus
ENSCSAVG00000004851	-	100	61.367	MGP_PahariEiJ_G0025464	Cstf3	98	61.367	Mus_pahari
ENSCSAVG00000004851	-	100	61.367	MGP_SPRETEiJ_G0024939	Cstf3	98	61.367	Mus_spretus
ENSCSAVG00000004851	-	100	61.785	ENSMPUG00000011457	CSTF3	98	61.785	Mustela_putorius_furo
ENSCSAVG00000004851	-	100	61.785	ENSMLUG00000003073	-	98	61.785	Myotis_lucifugus
ENSCSAVG00000004851	-	100	60.530	ENSMLUG00000026022	-	98	60.530	Myotis_lucifugus
ENSCSAVG00000004851	-	100	61.506	ENSNGAG00000010677	Cstf3	99	61.506	Nannospalax_galili
ENSCSAVG00000004851	-	89	61.417	ENSNBRG00000007345	cstf3	100	61.417	Neolamprologus_brichardi
ENSCSAVG00000004851	-	100	61.785	ENSNLEG00000017901	CSTF3	96	68.233	Nomascus_leucogenys
ENSCSAVG00000004851	-	74	62.619	ENSMEUG00000005640	-	99	62.619	Notamacropus_eugenii
ENSCSAVG00000004851	-	92	40.336	ENSOPRG00000000199	-	65	60.976	Ochotona_princeps
ENSCSAVG00000004851	-	100	43.939	ENSODEG00000006311	-	97	52.941	Octodon_degus
ENSCSAVG00000004851	-	100	61.925	ENSODEG00000016737	-	99	60.948	Octodon_degus
ENSCSAVG00000004851	-	99	61.538	ENSONIG00000005563	cstf3	98	61.453	Oreochromis_niloticus
ENSCSAVG00000004851	-	92	61.422	ENSOANG00000015140	CSTF3	100	61.422	Ornithorhynchus_anatinus
ENSCSAVG00000004851	-	100	61.646	ENSOCUG00000015417	CSTF3	98	61.646	Oryctolagus_cuniculus
ENSCSAVG00000004851	-	100	61.885	ENSORLG00000009762	cstf3	99	61.885	Oryzias_latipes
ENSCSAVG00000004851	-	100	61.885	ENSORLG00020005540	cstf3	99	61.885	Oryzias_latipes_hni
ENSCSAVG00000004851	-	100	61.885	ENSORLG00015003551	cstf3	99	61.885	Oryzias_latipes_hsok
ENSCSAVG00000004851	-	100	61.538	ENSOMEG00000003848	cstf3	99	61.538	Oryzias_melastigma
ENSCSAVG00000004851	-	100	61.528	ENSOGAG00000010229	CSTF3	98	61.528	Otolemur_garnettii
ENSCSAVG00000004851	-	91	61.832	ENSOARG00000017271	CSTF3	99	61.832	Ovis_aries
ENSCSAVG00000004851	-	100	59.777	ENSPPAG00000027358	CSTF3	99	59.777	Pan_paniscus
ENSCSAVG00000004851	-	100	61.925	ENSPPRG00000016852	CSTF3	98	61.925	Panthera_pardus
ENSCSAVG00000004851	-	100	61.925	ENSPTIG00000008716	CSTF3	98	61.925	Panthera_tigris_altaica
ENSCSAVG00000004851	-	100	61.785	ENSPTRG00000003485	CSTF3	98	61.785	Pan_troglodytes
ENSCSAVG00000004851	-	100	61.785	ENSPANG00000013722	CSTF3	97	68.456	Papio_anubis
ENSCSAVG00000004851	-	100	61.290	ENSPKIG00000023648	cstf3	98	61.290	Paramormyrops_kingsleyae
ENSCSAVG00000004851	-	100	62.483	ENSPSIG00000009173	CSTF3	98	62.483	Pelodiscus_sinensis
ENSCSAVG00000004851	-	76	69.403	ENSPMGG00000000164	cstf3	98	69.403	Periophthalmus_magnuspinnatus
ENSCSAVG00000004851	-	100	61.367	ENSPEMG00000011481	Cstf3	98	61.367	Peromyscus_maniculatus_bairdii
ENSCSAVG00000004851	-	100	59.414	ENSPMAG00000007282	cstf3	98	59.637	Petromyzon_marinus
ENSCSAVG00000004851	-	100	60.167	ENSPCIG00000026406	-	100	61.792	Phascolarctos_cinereus
ENSCSAVG00000004851	-	100	55.882	ENSPCIG00000030419	-	89	55.882	Phascolarctos_cinereus
ENSCSAVG00000004851	-	100	61.603	ENSPFOG00000017239	cstf3	98	61.603	Poecilia_formosa
ENSCSAVG00000004851	-	100	61.603	ENSPLAG00000009456	cstf3	98	61.603	Poecilia_latipinna
ENSCSAVG00000004851	-	100	61.603	ENSPMEG00000010320	cstf3	98	61.603	Poecilia_mexicana
ENSCSAVG00000004851	-	100	61.744	ENSPREG00000013549	cstf3	98	61.744	Poecilia_reticulata
ENSCSAVG00000004851	-	100	61.785	ENSPPYG00000003375	CSTF3	98	61.785	Pongo_abelii
ENSCSAVG00000004851	-	67	66.899	ENSPCAG00000008025	-	66	66.899	Procavia_capensis
ENSCSAVG00000004851	-	100	58.438	ENSPCOG00000014417	CSTF3	98	58.438	Propithecus_coquereli
ENSCSAVG00000004851	-	100	58.159	ENSPVAG00000002350	CSTF3	98	58.159	Pteropus_vampyrus
ENSCSAVG00000004851	-	100	60.615	ENSPNYG00000018259	cstf3	99	60.615	Pundamilia_nyererei
ENSCSAVG00000004851	-	100	61.744	ENSPNAG00000020182	cstf3	98	61.744	Pygocentrus_nattereri
ENSCSAVG00000004851	-	89	60.849	ENSRNOG00000012089	Cstf3	100	60.849	Rattus_norvegicus
ENSCSAVG00000004851	-	100	60.948	ENSRBIG00000044258	CSTF3	100	61.635	Rhinopithecus_bieti
ENSCSAVG00000004851	-	100	61.785	ENSRROG00000043450	CSTF3	100	61.635	Rhinopithecus_roxellana
ENSCSAVG00000004851	-	100	61.785	ENSSBOG00000024764	CSTF3	97	69.799	Saimiri_boliviensis_boliviensis
ENSCSAVG00000004851	-	100	59.944	ENSSHAG00000003135	-	98	59.944	Sarcophilus_harrisii
ENSCSAVG00000004851	-	100	61.925	ENSSHAG00000018128	-	98	61.925	Sarcophilus_harrisii
ENSCSAVG00000004851	-	100	61.345	ENSSFOG00015022133	cstf3	98	61.345	Scleropages_formosus
ENSCSAVG00000004851	-	100	61.646	ENSSMAG00000002197	cstf3	98	61.646	Scophthalmus_maximus
ENSCSAVG00000004851	-	100	61.259	ENSSDUG00000020426	cstf3	98	61.259	Seriola_dumerili
ENSCSAVG00000004851	-	100	61.259	ENSSLDG00000025649	cstf3	100	60.684	Seriola_lalandi_dorsalis
ENSCSAVG00000004851	-	100	61.785	ENSSARG00000000391	CSTF3	98	61.785	Sorex_araneus
ENSCSAVG00000004851	-	98	62.108	ENSSPUG00000010546	CSTF3	100	62.108	Sphenodon_punctatus
ENSCSAVG00000004851	-	100	61.259	ENSSPAG00000004958	cstf3	98	61.259	Stegastes_partitus
ENSCSAVG00000004851	-	100	61.646	ENSSSCG00000040954	CSTF3	99	61.646	Sus_scrofa
ENSCSAVG00000004851	-	100	61.925	ENSTGUG00000005010	CSTF3	99	61.925	Taeniopygia_guttata
ENSCSAVG00000004851	-	100	61.181	ENSTRUG00000004959	cstf3	100	60.200	Takifugu_rubripes
ENSCSAVG00000004851	-	100	61.463	ENSTNIG00000013811	cstf3	98	61.463	Tetraodon_nigroviridis
ENSCSAVG00000004851	-	91	60.337	ENSTBEG00000001544	CSTF3	90	60.337	Tupaia_belangeri
ENSCSAVG00000004851	-	100	59.414	ENSTTRG00000016366	CSTF3	98	59.414	Tursiops_truncatus
ENSCSAVG00000004851	-	100	61.646	ENSUMAG00000018971	CSTF3	100	61.478	Ursus_maritimus
ENSCSAVG00000004851	-	100	61.646	ENSVPAG00000007800	CSTF3	98	61.646	Vicugna_pacos
ENSCSAVG00000004851	-	100	61.785	ENSVVUG00000014938	CSTF3	100	61.635	Vulpes_vulpes
ENSCSAVG00000004851	-	89	53.488	ENSXETG00000021399	cstf3	99	54.254	Xenopus_tropicalis
ENSCSAVG00000004851	-	66	31.677	ENSXETG00000017946	-	99	31.677	Xenopus_tropicalis
ENSCSAVG00000004851	-	89	60.952	ENSXCOG00000011741	cstf3	100	60.952	Xiphophorus_couchianus
ENSCSAVG00000004851	-	100	61.322	ENSXMAG00000009545	cstf3	98	61.322	Xiphophorus_maculatus