EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000004935 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 1599 bases
Position: chrreftig_21:1376592-1378190
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000008288	RRM_1	PF00076.22	2.6e-24	1	1
ENSCSAVP00000008287	RRM_1	PF00076.22	2.8e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000008395	-	628	-	ENSCSAVP00000008287	148 (aa)	-	H2YSH7
ENSCSAVT00000008396	-	580	-	ENSCSAVP00000008288	144 (aa)	-	H2YSH8
ENSCSAVT00000008397	-	229	-	ENSCSAVP00000008289	41 (aa)	-	H2YSH9

Gene Model

Click here to download ENSCSAVG00000004935's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004935's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000004935	-	60	76.744	ENSCSAVG00000004946	-	82	77.108
ENSCSAVG00000004935	-	71	35.294	ENSCSAVG00000000472	-	76	38.462

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000004935	-	54	44.872	WBGene00011156	R09B3.3	91	44.156	Caenorhabditis_elegans
ENSCSAVG00000004935	-	52	48.000	WBGene00011155	R09B3.2	90	48.000	Caenorhabditis_elegans
ENSCSAVG00000004935	-	64	64.894	ENSCING00000008495	rgc	59	64.894	Ciona_intestinalis
ENSCSAVG00000004935	-	58	60.714	ENSCING00000024526	-	86	59.589	Ciona_intestinalis