EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000004946 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 2092 bases
Position: chrreftig_21:1380083-1382174
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000008315	RRM_1	PF00076.22	5e-24	1	1
ENSCSAVP00000008316	RRM_1	PF00076.22	8.5e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000008423	-	539	-	ENSCSAVP00000008315	101 (aa)	-	H2YSK5
ENSCSAVT00000008424	-	646	-	ENSCSAVP00000008316	121 (aa)	-	H2YSK6

Gene Model

Click here to download ENSCSAVG00000004946's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000004946's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000004946	-	82	77.108	ENSCSAVG00000004935	-	60	76.744
ENSCSAVG00000004946	-	79	40.000	ENSCSAVG00000000472	-	77	39.241
ENSCSAVG00000004946	-	93	38.462	ENSCSAVG00000000188	-	50	38.462

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000004946	-	75	40.789	WBGene00011155	R09B3.2	90	41.333	Caenorhabditis_elegans
ENSCSAVG00000004946	-	79	43.750	WBGene00011156	R09B3.3	94	43.750	Caenorhabditis_elegans
ENSCSAVG00000004946	-	80	35.802	ENSCING00000013170	-	51	35.802	Ciona_intestinalis
ENSCSAVG00000004946	-	80	60.494	ENSCING00000008495	rgc	50	62.025	Ciona_intestinalis
ENSCSAVG00000004946	-	83	60.714	ENSCING00000024526	-	51	60.465	Ciona_intestinalis