EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000005094 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 14468 bases
Position: chrreftig_70:197442-211909
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000008573	ResIII	PF04851.15	1e-09	1	1
ENSCSAVP00000008573	DEAD	PF00270.29	9.3e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000008682	-	1404	-	ENSCSAVP00000008572	468 (aa)	-	H2YTB2
ENSCSAVT00000008683	-	2034	-	ENSCSAVP00000008573	678 (aa)	-	H2YTB3

Gene Model

Click here to download ENSCSAVG00000005094's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000005094's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000005094	-	91	36.023	ENSCSAVG00000007670	-	97	31.678

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000005094	-	100	53.482	ENSAPOG00000005304	hfm1	79	53.482	Acanthochromis_polyacanthus
ENSCSAVG00000005094	-	100	52.925	ENSACIG00000021553	hfm1	64	52.925	Amphilophus_citrinellus
ENSCSAVG00000005094	-	100	52.222	ENSAOCG00000022839	hfm1	84	52.222	Amphiprion_ocellaris
ENSCSAVG00000005094	-	100	52.925	ENSAPEG00000014316	hfm1	84	52.925	Amphiprion_percula
ENSCSAVG00000005094	-	100	52.507	ENSATEG00000019181	hfm1	58	52.906	Anabas_testudineus
ENSCSAVG00000005094	-	100	52.228	ENSACLG00000009033	hfm1	80	50.838	Astatotilapia_calliptera
ENSCSAVG00000005094	-	100	53.621	ENSCPOG00000007421	HFM1	50	53.621	Cavia_porcellus
ENSCSAVG00000005094	-	99	50.829	ENSCGRG00001016995	Hfm1	50	50.829	Cricetulus_griseus_chok1gshd
ENSCSAVG00000005094	-	100	50.836	ENSCSEG00000017659	hfm1	64	50.836	Cynoglossus_semilaevis
ENSCSAVG00000005094	-	92	51.874	ENSCVAG00000005075	hfm1	79	51.874	Cyprinodon_variegatus
ENSCSAVG00000005094	-	100	53.706	ENSDARG00000104288	hfm1	63	53.706	Danio_rerio
ENSCSAVG00000005094	-	55	53.771	ENSEBUG00000006133	-	78	65.116	Eptatretus_burgeri
ENSCSAVG00000005094	-	100	53.343	ENSEASG00005015424	HFM1	70	53.343	Equus_asinus_asinus
ENSCSAVG00000005094	-	100	54.457	ENSELUG00000018944	hfm1	76	53.296	Esox_lucius
ENSCSAVG00000005094	-	100	50.698	ENSGMOG00000017436	hfm1	71	50.698	Gadus_morhua
ENSCSAVG00000005094	-	100	51.671	ENSGAFG00000018093	hfm1	78	50.210	Gambusia_affinis
ENSCSAVG00000005094	-	100	50.978	ENSGACG00000015686	hfm1	71	50.978	Gasterosteus_aculeatus
ENSCSAVG00000005094	-	100	52.925	ENSHBUG00000007309	hfm1	66	52.925	Haplochromis_burtoni
ENSCSAVG00000005094	-	100	49.791	ENSHCOG00000019632	hfm1	83	49.791	Hippocampus_comes
ENSCSAVG00000005094	-	100	54.039	ENSIPUG00000017020	hfm1	76	52.727	Ictalurus_punctatus
ENSCSAVG00000005094	-	100	53.482	ENSJJAG00000017198	Hfm1	50	53.482	Jaculus_jaculus
ENSCSAVG00000005094	-	100	52.348	ENSKMAG00000002282	hfm1	72	52.348	Kryptolebias_marmoratus
ENSCSAVG00000005094	-	100	51.811	ENSLBEG00000006759	hfm1	79	50.070	Labrus_bergylta
ENSCSAVG00000005094	-	100	52.552	ENSLACG00000010698	HFM1	66	52.552	Latimeria_chalumnae
ENSCSAVG00000005094	-	100	52.917	ENSLOCG00000004931	hfm1	64	52.917	Lepisosteus_oculatus
ENSCSAVG00000005094	-	93	53.284	ENSLAFG00000015903	-	87	53.284	Loxodonta_africana
ENSCSAVG00000005094	-	100	51.671	ENSMAMG00000004623	hfm1	81	49.930	Mastacembelus_armatus
ENSCSAVG00000005094	-	100	52.228	ENSMZEG00005004679	hfm1	80	50.838	Maylandia_zebra
ENSCSAVG00000005094	-	92	54.641	ENSMGAG00000008437	HFM1	81	54.641	Meleagris_gallopavo
ENSCSAVG00000005094	-	100	53.147	ENSMMOG00000006148	hfm1	76	53.147	Mola_mola
ENSCSAVG00000005094	-	100	52.786	ENSMALG00000002401	hfm1	78	50.838	Monopterus_albus
ENSCSAVG00000005094	-	100	51.676	ENSNBRG00000002910	hfm1	81	51.676	Neolamprologus_brichardi
ENSCSAVG00000005094	-	100	52.646	ENSONIG00000010590	hfm1	66	52.646	Oreochromis_niloticus
ENSCSAVG00000005094	-	100	52.587	ENSORLG00000026844	hfm1	85	52.587	Oryzias_latipes
ENSCSAVG00000005094	-	100	51.965	ENSORLG00020002951	hfm1	53	51.965	Oryzias_latipes_hni
ENSCSAVG00000005094	-	100	53.268	ENSOGAG00000032369	HFM1	57	53.268	Otolemur_garnettii
ENSCSAVG00000005094	-	100	53.621	ENSPPAG00000024582	HFM1	52	53.621	Pan_paniscus
ENSCSAVG00000005094	-	100	53.064	ENSPKIG00000003810	hfm1	80	51.955	Paramormyrops_kingsleyae
ENSCSAVG00000005094	-	100	49.720	ENSPMGG00000011059	hfm1	84	49.720	Periophthalmus_magnuspinnatus
ENSCSAVG00000005094	-	100	51.950	ENSPFOG00000017194	hfm1	66	51.950	Poecilia_formosa
ENSCSAVG00000005094	-	100	52.089	ENSPLAG00000000571	hfm1	63	52.089	Poecilia_latipinna
ENSCSAVG00000005094	-	100	52.089	ENSPMEG00000019475	hfm1	64	52.089	Poecilia_mexicana
ENSCSAVG00000005094	-	100	51.532	ENSPREG00000007803	hfm1	78	50.490	Poecilia_reticulata
ENSCSAVG00000005094	-	100	52.089	ENSPNYG00000001795	hfm1	80	50.838	Pundamilia_nyererei
ENSCSAVG00000005094	-	100	52.022	ENSPNAG00000010865	hfm1	68	52.022	Pygocentrus_nattereri
ENSCSAVG00000005094	-	82	54.054	ENSSHAG00000014616	-	65	54.054	Sarcophilus_harrisii
ENSCSAVG00000005094	-	100	52.216	ENSSMAG00000006907	hfm1	68	52.216	Scophthalmus_maximus
ENSCSAVG00000005094	-	100	51.261	ENSSDUG00000011424	hfm1	78	51.261	Seriola_dumerili
ENSCSAVG00000005094	-	100	51.117	ENSSLDG00000016386	hfm1	77	51.117	Seriola_lalandi_dorsalis
ENSCSAVG00000005094	-	100	51.748	ENSSPAG00000001023	hfm1	78	51.748	Stegastes_partitus
ENSCSAVG00000005094	-	100	53.278	ENSSSCG00000006912	HFM1	51	53.278	Sus_scrofa
ENSCSAVG00000005094	-	100	54.242	ENSTGUG00000006172	HFM1	73	54.242	Taeniopygia_guttata
ENSCSAVG00000005094	-	62	53.084	ENSTNIG00000006962	hfm1	92	53.084	Tetraodon_nigroviridis
ENSCSAVG00000005094	-	100	53.212	ENSVVUG00000020760	HFM1	69	53.212	Vulpes_vulpes
ENSCSAVG00000005094	-	100	50.769	ENSXMAG00000004178	hfm1	77	50.769	Xiphophorus_maculatus