EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000005154 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 33828 bases
Position: chrreftig_16:607014-640841
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000008679	Symplekin_C	PF12295.8	8.1e-53	1	1
ENSCSAVP00000008678	Symplekin_C	PF12295.8	1.5e-52	1	1
ENSCSAVP00000008677	Symplekin_C	PF12295.8	4.8e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000008789	-	3337	-	ENSCSAVP00000008679	1025 (aa)	-	H2YTL9
ENSCSAVT00000008788	-	3280	-	ENSCSAVP00000008678	1018 (aa)	-	H2YTL8
ENSCSAVT00000008787	-	1127	-	ENSCSAVP00000008677	332 (aa)	-	H2YTL7

Gene Model

Click here to download ENSCSAVG00000005154's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000005154's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000005154	-	100	48.071	ENSG00000125755	SYMPK	80	67.105	Homo_sapiens
ENSCSAVG00000005154	-	100	47.826	ENSAPOG00000015934	sympk	96	46.206	Acanthochromis_polyacanthus
ENSCSAVG00000005154	-	100	47.981	ENSAMEG00000000680	SYMPK	82	47.793	Ailuropoda_melanoleuca
ENSCSAVG00000005154	-	99	47.712	ENSACIG00000006357	sympk	88	47.324	Amphilophus_citrinellus
ENSCSAVG00000005154	-	100	47.691	ENSAOCG00000024124	sympk	88	47.686	Amphiprion_ocellaris
ENSCSAVG00000005154	-	100	47.606	ENSAPEG00000003465	sympk	85	47.512	Amphiprion_percula
ENSCSAVG00000005154	-	100	48.351	ENSATEG00000008472	sympk	85	48.138	Anabas_testudineus
ENSCSAVG00000005154	-	94	47.800	ENSACAG00000004126	SYMPK	82	47.800	Anolis_carolinensis
ENSCSAVG00000005154	-	100	47.977	ENSANAG00000021087	SYMPK	94	47.729	Aotus_nancymaae
ENSCSAVG00000005154	-	99	48.321	ENSACLG00000001813	sympk	85	48.127	Astatotilapia_calliptera
ENSCSAVG00000005154	-	100	48.674	ENSAMXG00000013677	sympk	85	47.727	Astyanax_mexicanus
ENSCSAVG00000005154	-	100	48.357	ENSBTAG00000012101	SYMPK	81	48.169	Bos_taurus
ENSCSAVG00000005154	-	100	47.977	ENSCJAG00000012172	SYMPK	93	47.159	Callithrix_jacchus
ENSCSAVG00000005154	-	100	47.981	ENSCAFG00000004376	SYMPK	81	47.793	Canis_familiaris
ENSCSAVG00000005154	-	100	47.981	ENSCAFG00020001815	SYMPK	81	47.793	Canis_lupus_dingo
ENSCSAVG00000005154	-	100	48.545	ENSCHIG00000026784	SYMPK	81	48.263	Capra_hircus
ENSCSAVG00000005154	-	100	48.593	ENSTSYG00000006268	SYMPK	95	45.733	Carlito_syrichta
ENSCSAVG00000005154	-	98	47.495	ENSCAPG00000005112	SYMPK	92	47.303	Cavia_aperea
ENSCSAVG00000005154	-	100	48.311	ENSCPOG00000010434	SYMPK	83	48.124	Cavia_porcellus
ENSCSAVG00000005154	-	100	47.977	ENSCCAG00000036309	SYMPK	94	47.610	Cebus_capucinus
ENSCSAVG00000005154	-	100	47.977	ENSCATG00000045107	SYMPK	95	47.651	Cercocebus_atys
ENSCSAVG00000005154	-	100	48.405	ENSCLAG00000001206	SYMPK	82	48.218	Chinchilla_lanigera
ENSCSAVG00000005154	-	100	47.977	ENSCSAG00000003115	SYMPK	81	47.695	Chlorocebus_sabaeus
ENSCSAVG00000005154	-	81	81.250	ENSCHOG00000012456	SYMPK	75	81.250	Choloepus_hoffmanni
ENSCSAVG00000005154	-	100	47.854	ENSCPBG00000007170	SYMPK	83	47.948	Chrysemys_picta_bellii
ENSCSAVG00000005154	-	99	79.735	ENSCING00000021232	-	94	79.640	Ciona_intestinalis
ENSCSAVG00000005154	-	100	46.754	ENSCANG00000040907	SYMPK	93	46.583	Colobus_angolensis_palliatus
ENSCSAVG00000005154	-	89	50.000	ENSCGRG00001010086	Sympk	74	51.546	Cricetulus_griseus_chok1gshd
ENSCSAVG00000005154	-	100	47.981	ENSCSEG00000016802	sympk	85	47.606	Cynoglossus_semilaevis
ENSCSAVG00000005154	-	99	47.691	ENSDARG00000059553	sympk	83	46.960	Danio_rerio
ENSCSAVG00000005154	-	100	47.883	ENSDNOG00000016149	SYMPK	81	47.601	Dasypus_novemcinctus
ENSCSAVG00000005154	-	99	34.916	FBgn0037371	Sym	89	34.916	Drosophila_melanogaster
ENSCSAVG00000005154	-	78	45.892	ENSEBUG00000000387	sympk	85	45.991	Eptatretus_burgeri
ENSCSAVG00000005154	-	100	48.075	ENSEASG00005014227	SYMPK	82	47.887	Equus_asinus_asinus
ENSCSAVG00000005154	-	100	48.075	ENSECAG00000008163	SYMPK	82	47.887	Equus_caballus
ENSCSAVG00000005154	-	76	47.368	ENSEEUG00000000270	-	73	47.368	Erinaceus_europaeus
ENSCSAVG00000005154	-	100	48.117	ENSELUG00000000850	sympk	83	47.717	Esox_lucius
ENSCSAVG00000005154	-	100	47.981	ENSFCAG00000007337	SYMPK	81	47.793	Felis_catus
ENSCSAVG00000005154	-	100	48.499	ENSFDAG00000011272	SYMPK	82	48.218	Fukomys_damarensis
ENSCSAVG00000005154	-	99	47.883	ENSFHEG00000010274	sympk	85	47.736	Fundulus_heteroclitus
ENSCSAVG00000005154	-	100	47.188	ENSGMOG00000002357	sympk	96	47.003	Gadus_morhua
ENSCSAVG00000005154	-	100	47.552	ENSGAFG00000010976	sympk	85	47.552	Gambusia_affinis
ENSCSAVG00000005154	-	100	47.220	ENSGACG00000002735	sympk	93	47.443	Gasterosteus_aculeatus
ENSCSAVG00000005154	-	64	45.573	ENSGAGG00000012538	-	89	45.249	Gopherus_agassizii
ENSCSAVG00000005154	-	100	48.071	ENSGGOG00000003410	SYMPK	92	47.826	Gorilla_gorilla
ENSCSAVG00000005154	-	99	48.601	ENSHBUG00000023564	sympk	85	48.351	Haplochromis_burtoni
ENSCSAVG00000005154	-	100	46.154	ENSHGLG00000005228	SYMPK	81	45.966	Heterocephalus_glaber_female
ENSCSAVG00000005154	-	100	48.218	ENSHGLG00100018571	SYMPK	83	48.030	Heterocephalus_glaber_male
ENSCSAVG00000005154	-	100	46.878	ENSHCOG00000017400	sympk	87	46.628	Hippocampus_comes
ENSCSAVG00000005154	-	100	48.311	ENSIPUG00000024020	SYMPK	84	47.834	Ictalurus_punctatus
ENSCSAVG00000005154	-	100	48.075	ENSSTOG00000001534	SYMPK	82	47.887	Ictidomys_tridecemlineatus
ENSCSAVG00000005154	-	100	47.793	ENSJJAG00000006633	Sympk	81	47.512	Jaculus_jaculus
ENSCSAVG00000005154	-	99	48.030	ENSKMAG00000016292	sympk	85	47.842	Kryptolebias_marmoratus
ENSCSAVG00000005154	-	100	47.695	ENSLBEG00000027913	sympk	92	43.146	Labrus_bergylta
ENSCSAVG00000005154	-	100	47.254	ENSLACG00000016497	SYMPK	86	46.736	Latimeria_chalumnae
ENSCSAVG00000005154	-	100	48.075	ENSLAFG00000008726	SYMPK	81	47.793	Loxodonta_africana
ENSCSAVG00000005154	-	100	47.977	ENSMMUG00000015428	SYMPK	93	44.800	Macaca_mulatta
ENSCSAVG00000005154	-	100	47.977	ENSMNEG00000019439	SYMPK	95	47.651	Macaca_nemestrina
ENSCSAVG00000005154	-	100	47.977	ENSMLEG00000040508	SYMPK	95	47.651	Mandrillus_leucophaeus
ENSCSAVG00000005154	-	100	48.162	ENSMAMG00000010486	sympk	85	47.952	Mastacembelus_armatus
ENSCSAVG00000005154	-	99	48.321	ENSMZEG00005014146	sympk	85	48.127	Maylandia_zebra
ENSCSAVG00000005154	-	100	47.793	ENSMAUG00000015657	Sympk	82	47.512	Mesocricetus_auratus
ENSCSAVG00000005154	-	100	47.981	ENSMICG00000001871	SYMPK	87	45.599	Microcebus_murinus
ENSCSAVG00000005154	-	100	47.981	ENSMOCG00000008388	Sympk	81	47.700	Microtus_ochrogaster
ENSCSAVG00000005154	-	100	47.885	ENSMMOG00000019227	sympk	89	47.692	Mola_mola
ENSCSAVG00000005154	-	100	47.928	ENSMODG00000021534	SYMPK	81	47.928	Monodelphis_domestica
ENSCSAVG00000005154	-	84	44.763	ENSMALG00000008347	sympk	90	43.668	Monopterus_albus
ENSCSAVG00000005154	-	100	47.887	MGP_CAROLIEiJ_G0029267	Sympk	77	63.303	Mus_caroli
ENSCSAVG00000005154	-	100	47.793	ENSMUSG00000023118	Sympk	76	63.303	Mus_musculus
ENSCSAVG00000005154	-	100	47.887	MGP_PahariEiJ_G0021127	Sympk	77	63.303	Mus_pahari
ENSCSAVG00000005154	-	100	47.887	MGP_SPRETEiJ_G0030351	-	77	63.303	Mus_spretus
ENSCSAVG00000005154	-	100	47.723	ENSMPUG00000005505	SYMPK	81	47.533	Mustela_putorius_furo
ENSCSAVG00000005154	-	82	45.023	ENSMLUG00000001359	SYMPK	86	44.683	Myotis_lucifugus
ENSCSAVG00000005154	-	100	48.169	ENSNGAG00000000820	Sympk	81	47.887	Nannospalax_galili
ENSCSAVG00000005154	-	99	48.545	ENSNBRG00000018101	sympk	89	48.292	Neolamprologus_brichardi
ENSCSAVG00000005154	-	99	44.498	ENSNLEG00000002369	SYMPK	79	44.306	Nomascus_leucogenys
ENSCSAVG00000005154	-	77	56.881	ENSMEUG00000003866	SYMPK	63	56.881	Notamacropus_eugenii
ENSCSAVG00000005154	-	100	47.086	ENSOPRG00000009967	SYMPK	81	46.898	Ochotona_princeps
ENSCSAVG00000005154	-	100	48.405	ENSODEG00000007519	SYMPK	83	48.218	Octodon_degus
ENSCSAVG00000005154	-	99	48.790	ENSONIG00000016802	sympk	91	48.505	Oreochromis_niloticus
ENSCSAVG00000005154	-	88	45.763	ENSOCUG00000005511	SYMPK	86	45.445	Oryctolagus_cuniculus
ENSCSAVG00000005154	-	100	47.659	ENSORLG00000015338	sympk	93	45.358	Oryzias_latipes
ENSCSAVG00000005154	-	100	47.753	ENSORLG00020004402	sympk	86	47.830	Oryzias_latipes_hni
ENSCSAVG00000005154	-	100	47.753	ENSORLG00015005712	sympk	86	47.830	Oryzias_latipes_hsok
ENSCSAVG00000005154	-	100	47.785	ENSOMEG00000022561	sympk	86	47.220	Oryzias_melastigma
ENSCSAVG00000005154	-	100	48.075	ENSOGAG00000013483	SYMPK	81	47.793	Otolemur_garnettii
ENSCSAVG00000005154	-	100	46.872	ENSOARG00000010349	SYMPK	82	46.449	Ovis_aries
ENSCSAVG00000005154	-	100	48.071	ENSPPAG00000043204	SYMPK	94	44.933	Pan_paniscus
ENSCSAVG00000005154	-	100	47.981	ENSPPRG00000004282	SYMPK	81	47.793	Panthera_pardus
ENSCSAVG00000005154	-	100	47.981	ENSPTIG00000015420	SYMPK	87	47.793	Panthera_tigris_altaica
ENSCSAVG00000005154	-	100	48.071	ENSPTRG00000011169	SYMPK	94	44.933	Pan_troglodytes
ENSCSAVG00000005154	-	100	47.977	ENSPANG00000019930	SYMPK	95	47.651	Papio_anubis
ENSCSAVG00000005154	-	100	48.124	ENSPKIG00000017132	sympk	88	45.805	Paramormyrops_kingsleyae
ENSCSAVG00000005154	-	100	47.887	ENSPEMG00000007564	Sympk	81	47.606	Peromyscus_maniculatus_bairdii
ENSCSAVG00000005154	-	98	45.455	ENSPMAG00000004936	sympk	99	45.766	Petromyzon_marinus
ENSCSAVG00000005154	-	100	48.211	ENSPCIG00000024476	SYMPK	83	48.201	Phascolarctos_cinereus
ENSCSAVG00000005154	-	100	47.552	ENSPFOG00000001194	sympk	85	47.472	Poecilia_formosa
ENSCSAVG00000005154	-	100	47.552	ENSPLAG00000012995	sympk	85	47.472	Poecilia_latipinna
ENSCSAVG00000005154	-	100	47.646	ENSPMEG00000008099	sympk	85	47.552	Poecilia_mexicana
ENSCSAVG00000005154	-	100	47.552	ENSPREG00000006176	sympk	87	46.881	Poecilia_reticulata
ENSCSAVG00000005154	-	100	47.883	ENSPPYG00000010135	SYMPK	93	47.601	Pongo_abelii
ENSCSAVG00000005154	-	92	50.704	ENSPCAG00000005182	SYMPK	74	50.704	Procavia_capensis
ENSCSAVG00000005154	-	100	47.981	ENSPCOG00000023740	SYMPK	95	47.656	Propithecus_coquereli
ENSCSAVG00000005154	-	100	46.992	ENSPVAG00000001355	SYMPK	83	46.711	Pteropus_vampyrus
ENSCSAVG00000005154	-	99	48.694	ENSPNYG00000011455	sympk	84	48.445	Pundamilia_nyererei
ENSCSAVG00000005154	-	100	48.166	ENSPNAG00000016505	sympk	83	47.830	Pygocentrus_nattereri
ENSCSAVG00000005154	-	100	47.887	ENSRNOG00000014353	Sympk	81	47.606	Rattus_norvegicus
ENSCSAVG00000005154	-	100	47.977	ENSRBIG00000040963	SYMPK	94	47.679	Rhinopithecus_bieti
ENSCSAVG00000005154	-	100	47.977	ENSRROG00000024834	SYMPK	93	46.640	Rhinopithecus_roxellana
ENSCSAVG00000005154	-	100	47.883	ENSSBOG00000034497	SYMPK	95	44.667	Saimiri_boliviensis_boliviensis
ENSCSAVG00000005154	-	100	47.932	ENSSHAG00000003139	SYMPK	90	47.932	Sarcophilus_harrisii
ENSCSAVG00000005154	-	100	48.041	ENSSFOG00015006974	sympk	84	47.664	Scleropages_formosus
ENSCSAVG00000005154	-	100	48.068	ENSSMAG00000018130	sympk	68	47.628	Scophthalmus_maximus
ENSCSAVG00000005154	-	100	48.208	ENSSDUG00000007092	sympk	85	47.736	Seriola_dumerili
ENSCSAVG00000005154	-	100	48.208	ENSSLDG00000014774	sympk	94	44.096	Seriola_lalandi_dorsalis
ENSCSAVG00000005154	-	100	48.263	ENSSPUG00000002789	SYMPK	80	48.542	Sphenodon_punctatus
ENSCSAVG00000005154	-	100	47.798	ENSSPAG00000000854	sympk	85	47.704	Stegastes_partitus
ENSCSAVG00000005154	-	100	48.169	ENSSSCG00000003093	SYMPK	82	47.887	Sus_scrofa
ENSCSAVG00000005154	-	100	46.937	ENSTRUG00000010202	sympk	86	47.235	Takifugu_rubripes
ENSCSAVG00000005154	-	100	46.573	ENSTNIG00000017855	sympk	92	46.435	Tetraodon_nigroviridis
ENSCSAVG00000005154	-	78	61.905	ENSTBEG00000000454	SYMPK	62	61.905	Tupaia_belangeri
ENSCSAVG00000005154	-	95	56.250	ENSTTRG00000014311	SYMPK	77	56.250	Tursiops_truncatus
ENSCSAVG00000005154	-	100	47.847	ENSUAMG00000022272	SYMPK	88	47.550	Ursus_americanus
ENSCSAVG00000005154	-	100	47.981	ENSUMAG00000023698	SYMPK	81	47.793	Ursus_maritimus
ENSCSAVG00000005154	-	100	47.981	ENSVVUG00000003024	SYMPK	90	47.793	Vulpes_vulpes
ENSCSAVG00000005154	-	100	47.180	ENSXETG00000024453	sympk	86	47.230	Xenopus_tropicalis
ENSCSAVG00000005154	-	100	46.970	ENSXCOG00000015368	sympk	97	46.698	Xiphophorus_couchianus
ENSCSAVG00000005154	-	100	47.458	ENSXMAG00000005737	sympk	86	47.458	Xiphophorus_maculatus