EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000005346 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 6050 bases
Position: chrreftig_76:567834-573883
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000009047	B3_4	PF03483.17	1.6e-25	1	1
ENSCSAVP00000009046	B3_4	PF03483.17	1.8e-25	1	1
ENSCSAVP00000009045	B3_4	PF03483.17	1.8e-25	1	1
ENSCSAVP00000009044	B3_4	PF03483.17	3.5e-25	1	1
ENSCSAVP00000009045	B5	PF03484.15	3.6e-17	1	1
ENSCSAVP00000009044	B5	PF03484.15	3.8e-17	1	1
ENSCSAVP00000009046	B5	PF03484.15	9.4e-17	1	1
ENSCSAVP00000009047	B5	PF03484.15	6.2e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000009160	-	1761	-	ENSCSAVP00000009046	587 (aa)	-	H2YUN6
ENSCSAVT00000009161	-	1686	-	ENSCSAVP00000009047	562 (aa)	-	H2YUN7
ENSCSAVT00000009159	-	1905	-	ENSCSAVP00000009045	597 (aa)	-	H2YUN5
ENSCSAVT00000009158	-	1825	-	ENSCSAVP00000009044	608 (aa)	-	H2YUN4

Gene Model

Click here to download ENSCSAVG00000005346's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000005346's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000005346	-	99	59.866	ENSG00000116120	FARSB	99	59.866	Homo_sapiens
ENSCSAVG00000005346	-	99	62.207	ENSAPOG00000013072	farsb	99	59.866	Acanthochromis_polyacanthus
ENSCSAVG00000005346	-	99	61.204	ENSAMEG00000005984	FARSB	99	61.204	Ailuropoda_melanoleuca
ENSCSAVG00000005346	-	99	60.033	ENSACIG00000021623	farsb	99	60.033	Amphilophus_citrinellus
ENSCSAVG00000005346	-	99	61.371	ENSAOCG00000004912	farsb	99	59.866	Amphiprion_ocellaris
ENSCSAVG00000005346	-	99	61.371	ENSAPEG00000001153	farsb	99	59.030	Amphiprion_percula
ENSCSAVG00000005346	-	99	61.538	ENSATEG00000021441	farsb	70	61.538	Anabas_testudineus
ENSCSAVG00000005346	-	98	59.524	ENSAPLG00000010292	FARSB	98	59.524	Anas_platyrhynchos
ENSCSAVG00000005346	-	99	58.863	ENSACAG00000004769	FARSB	98	58.863	Anolis_carolinensis
ENSCSAVG00000005346	-	99	59.365	ENSANAG00000024637	FARSB	99	59.365	Aotus_nancymaae
ENSCSAVG00000005346	-	99	61.706	ENSACLG00000013951	farsb	99	60.627	Astatotilapia_calliptera
ENSCSAVG00000005346	-	90	60.277	ENSAMXG00000033881	farsb	99	60.277	Astyanax_mexicanus
ENSCSAVG00000005346	-	96	59.652	ENSBTAG00000045523	-	99	59.652	Bos_taurus
ENSCSAVG00000005346	-	99	60.167	ENSBTAG00000011649	FARSB	99	60.167	Bos_taurus
ENSCSAVG00000005346	-	99	56.500	WBGene00001498	fars-3	99	56.500	Caenorhabditis_elegans
ENSCSAVG00000005346	-	99	59.866	ENSCJAG00000012181	FARSB	99	59.866	Callithrix_jacchus
ENSCSAVG00000005346	-	99	60.535	ENSCAFG00000016094	-	99	60.535	Canis_familiaris
ENSCSAVG00000005346	-	99	58.765	ENSCAFG00020026684	FARSB	99	60.490	Canis_lupus_dingo
ENSCSAVG00000005346	-	99	60.500	ENSCHIG00000014275	FARSB	99	60.500	Capra_hircus
ENSCSAVG00000005346	-	99	59.365	ENSTSYG00000008461	FARSB	99	59.365	Carlito_syrichta
ENSCSAVG00000005346	-	94	54.478	ENSCAPG00000016436	FARSB	97	55.142	Cavia_aperea
ENSCSAVG00000005346	-	99	59.030	ENSCPOG00000013109	FARSB	99	59.030	Cavia_porcellus
ENSCSAVG00000005346	-	99	56.951	ENSCCAG00000025840	FARSB	99	56.951	Cebus_capucinus
ENSCSAVG00000005346	-	99	59.866	ENSCATG00000036168	FARSB	99	59.866	Cercocebus_atys
ENSCSAVG00000005346	-	99	59.799	ENSCLAG00000011954	FARSB	99	59.799	Chinchilla_lanigera
ENSCSAVG00000005346	-	99	59.866	ENSCSAG00000007806	FARSB	99	59.866	Chlorocebus_sabaeus
ENSCSAVG00000005346	-	80	72.414	ENSCHOG00000011785	FARSB	80	72.414	Choloepus_hoffmanni
ENSCSAVG00000005346	-	99	59.866	ENSCPBG00000019346	FARSB	98	59.866	Chrysemys_picta_bellii
ENSCSAVG00000005346	-	100	84.950	ENSCING00000004180	-	100	84.950	Ciona_intestinalis
ENSCSAVG00000005346	-	96	59.516	ENSCANG00000036239	FARSB	99	59.516	Colobus_angolensis_palliatus
ENSCSAVG00000005346	-	99	59.197	ENSCGRG00001022928	Farsb	99	59.197	Cricetulus_griseus_chok1gshd
ENSCSAVG00000005346	-	99	59.197	ENSCGRG00000001513	Farsb	99	59.197	Cricetulus_griseus_crigri
ENSCSAVG00000005346	-	99	60.870	ENSCSEG00000005415	farsb	95	60.870	Cynoglossus_semilaevis
ENSCSAVG00000005346	-	76	60.573	ENSCVAG00000018815	farsb	98	60.573	Cyprinodon_variegatus
ENSCSAVG00000005346	-	99	61.603	ENSDARG00000016864	farsb	99	61.603	Danio_rerio
ENSCSAVG00000005346	-	99	60.702	ENSDNOG00000002511	FARSB	99	60.702	Dasypus_novemcinctus
ENSCSAVG00000005346	-	99	60.201	ENSDORG00000011102	Farsb	99	60.201	Dipodomys_ordii
ENSCSAVG00000005346	-	99	58.765	FBgn0039175	beta-PheRS	99	58.765	Drosophila_melanogaster
ENSCSAVG00000005346	-	96	58.131	ENSETEG00000015080	FARSB	99	58.131	Echinops_telfairi
ENSCSAVG00000005346	-	99	55.946	ENSEBUG00000006846	farsb	99	55.946	Eptatretus_burgeri
ENSCSAVG00000005346	-	99	60.535	ENSEASG00005011297	FARSB	99	60.535	Equus_asinus_asinus
ENSCSAVG00000005346	-	99	58.481	ENSECAG00000023086	FARSB	99	60.469	Equus_caballus
ENSCSAVG00000005346	-	90	60.417	ENSEEUG00000007441	FARSB	91	60.417	Erinaceus_europaeus
ENSCSAVG00000005346	-	97	61.034	ENSELUG00000014767	farsb	99	61.034	Esox_lucius
ENSCSAVG00000005346	-	99	60.535	ENSFCAG00000026772	FARSB	99	60.535	Felis_catus
ENSCSAVG00000005346	-	99	57.119	ENSFALG00000006739	FARSB	99	57.119	Ficedula_albicollis
ENSCSAVG00000005346	-	99	59.933	ENSFDAG00000008871	FARSB	99	59.933	Fukomys_damarensis
ENSCSAVG00000005346	-	99	61.706	ENSFHEG00000020939	farsb	98	61.413	Fundulus_heteroclitus
ENSCSAVG00000005346	-	92	60.401	ENSGMOG00000013047	farsb	99	60.401	Gadus_morhua
ENSCSAVG00000005346	-	99	59.532	ENSGALG00000005236	FARSB	99	59.532	Gallus_gallus
ENSCSAVG00000005346	-	99	62.040	ENSGAFG00000020900	farsb	91	58.669	Gambusia_affinis
ENSCSAVG00000005346	-	92	62.842	ENSGACG00000000261	farsb	99	62.842	Gasterosteus_aculeatus
ENSCSAVG00000005346	-	99	60.201	ENSGAGG00000016575	FARSB	98	60.201	Gopherus_agassizii
ENSCSAVG00000005346	-	99	61.873	ENSHBUG00000022379	farsb	99	61.037	Haplochromis_burtoni
ENSCSAVG00000005346	-	99	59.766	ENSHGLG00000015965	FARSB	99	59.766	Heterocephalus_glaber_female
ENSCSAVG00000005346	-	99	59.766	ENSHGLG00100001035	FARSB	99	59.766	Heterocephalus_glaber_male
ENSCSAVG00000005346	-	94	56.522	ENSHCOG00000016462	farsb	99	57.064	Hippocampus_comes
ENSCSAVG00000005346	-	99	61.873	ENSIPUG00000002754	farsb	99	61.873	Ictalurus_punctatus
ENSCSAVG00000005346	-	99	60.601	ENSSTOG00000016169	FARSB	99	60.601	Ictidomys_tridecemlineatus
ENSCSAVG00000005346	-	99	59.532	ENSJJAG00000003267	Farsb	99	59.532	Jaculus_jaculus
ENSCSAVG00000005346	-	99	56.905	ENSKMAG00000005363	farsb	99	56.905	Kryptolebias_marmoratus
ENSCSAVG00000005346	-	99	62.814	ENSLBEG00000018127	farsb	69	62.814	Labrus_bergylta
ENSCSAVG00000005346	-	99	58.696	ENSLACG00000002551	FARSB	99	58.834	Latimeria_chalumnae
ENSCSAVG00000005346	-	99	60.201	ENSLOCG00000004136	farsb	99	60.201	Lepisosteus_oculatus
ENSCSAVG00000005346	-	99	59.699	ENSLAFG00000015659	FARSB	99	59.699	Loxodonta_africana
ENSCSAVG00000005346	-	99	59.699	ENSMFAG00000036645	FARSB	99	59.699	Macaca_fascicularis
ENSCSAVG00000005346	-	99	57.692	ENSMMUG00000007685	FARSB	99	57.692	Macaca_mulatta
ENSCSAVG00000005346	-	99	59.699	ENSMNEG00000030672	FARSB	99	59.699	Macaca_nemestrina
ENSCSAVG00000005346	-	99	59.866	ENSMLEG00000042060	FARSB	99	59.866	Mandrillus_leucophaeus
ENSCSAVG00000005346	-	99	61.538	ENSMAMG00000011835	farsb	99	58.291	Mastacembelus_armatus
ENSCSAVG00000005346	-	96	60.558	ENSMZEG00005004544	farsb	99	60.558	Maylandia_zebra
ENSCSAVG00000005346	-	95	58.803	ENSMGAG00000004670	FARSB	99	58.803	Meleagris_gallopavo
ENSCSAVG00000005346	-	66	46.076	ENSMAUG00000017805	Farsb	91	46.076	Mesocricetus_auratus
ENSCSAVG00000005346	-	99	60.368	ENSMICG00000002495	FARSB	99	60.368	Microcebus_murinus
ENSCSAVG00000005346	-	99	60.702	ENSMOCG00000003181	Farsb	99	60.702	Microtus_ochrogaster
ENSCSAVG00000005346	-	99	57.454	ENSMMOG00000006265	farsb	99	57.454	Mola_mola
ENSCSAVG00000005346	-	99	61.667	ENSMODG00000021192	FARSB	99	61.667	Monodelphis_domestica
ENSCSAVG00000005346	-	94	61.497	ENSMALG00000021188	farsb	92	61.497	Monopterus_albus
ENSCSAVG00000005346	-	99	60.535	MGP_CAROLIEiJ_G0014310	Farsb	97	62.771	Mus_caroli
ENSCSAVG00000005346	-	99	60.368	ENSMUSG00000026245	Farsb	99	60.368	Mus_musculus
ENSCSAVG00000005346	-	99	60.368	MGP_PahariEiJ_G0027548	Farsb	99	61.966	Mus_pahari
ENSCSAVG00000005346	-	99	60.368	MGP_SPRETEiJ_G0015116	Farsb	99	60.368	Mus_spretus
ENSCSAVG00000005346	-	99	60.201	ENSMPUG00000016677	FARSB	99	60.201	Mustela_putorius_furo
ENSCSAVG00000005346	-	99	61.538	ENSMLUG00000010904	FARSB	99	61.538	Myotis_lucifugus
ENSCSAVG00000005346	-	99	59.866	ENSNGAG00000014602	Farsb	99	59.866	Nannospalax_galili
ENSCSAVG00000005346	-	99	61.706	ENSNBRG00000003198	farsb	99	59.532	Neolamprologus_brichardi
ENSCSAVG00000005346	-	99	59.866	ENSNLEG00000009638	FARSB	99	59.866	Nomascus_leucogenys
ENSCSAVG00000005346	-	99	54.181	ENSMEUG00000010798	FARSB	99	54.181	Notamacropus_eugenii
ENSCSAVG00000005346	-	89	56.429	ENSOPRG00000003292	FARSB	89	56.429	Ochotona_princeps
ENSCSAVG00000005346	-	99	59.966	ENSODEG00000005451	FARSB	99	59.966	Octodon_degus
ENSCSAVG00000005346	-	99	62.207	ENSONIG00000014639	farsb	99	62.207	Oreochromis_niloticus
ENSCSAVG00000005346	-	88	60.377	ENSOANG00000015387	FARSB	97	60.377	Ornithorhynchus_anatinus
ENSCSAVG00000005346	-	91	59.489	ENSOCUG00000007828	FARSB	94	59.489	Oryctolagus_cuniculus
ENSCSAVG00000005346	-	99	61.873	ENSORLG00000009135	farsb	99	60.033	Oryzias_latipes
ENSCSAVG00000005346	-	99	62.040	ENSORLG00015001072	farsb	99	55.814	Oryzias_latipes_hsok
ENSCSAVG00000005346	-	99	62.144	ENSOMEG00000019009	farsb	99	59.464	Oryzias_melastigma
ENSCSAVG00000005346	-	99	56.436	ENSOGAG00000010125	FARSB	99	56.436	Otolemur_garnettii
ENSCSAVG00000005346	-	99	60.500	ENSOARG00000020329	FARSB	99	60.500	Ovis_aries
ENSCSAVG00000005346	-	99	60.201	ENSPPAG00000039268	FARSB	99	60.201	Pan_paniscus
ENSCSAVG00000005346	-	99	60.535	ENSPPRG00000010687	FARSB	99	60.535	Panthera_pardus
ENSCSAVG00000005346	-	99	60.368	ENSPTIG00000004299	FARSB	99	60.368	Panthera_tigris_altaica
ENSCSAVG00000005346	-	99	60.201	ENSPTRG00000012974	FARSB	99	60.201	Pan_troglodytes
ENSCSAVG00000005346	-	99	59.866	ENSPANG00000016304	FARSB	99	59.866	Papio_anubis
ENSCSAVG00000005346	-	99	60.201	ENSPKIG00000006661	farsb	99	60.201	Paramormyrops_kingsleyae
ENSCSAVG00000005346	-	99	59.899	ENSPSIG00000006248	FARSB	99	59.899	Pelodiscus_sinensis
ENSCSAVG00000005346	-	88	60.241	ENSPMGG00000002815	farsb	99	60.241	Periophthalmus_magnuspinnatus
ENSCSAVG00000005346	-	99	59.030	ENSPEMG00000003131	Farsb	99	59.030	Peromyscus_maniculatus_bairdii
ENSCSAVG00000005346	-	99	61.000	ENSPCIG00000019458	FARSB	99	61.000	Phascolarctos_cinereus
ENSCSAVG00000005346	-	99	61.873	ENSPLAG00000001104	farsb	91	61.277	Poecilia_latipinna
ENSCSAVG00000005346	-	99	62.207	ENSPMEG00000017658	farsb	91	61.702	Poecilia_mexicana
ENSCSAVG00000005346	-	99	61.873	ENSPREG00000010583	farsb	91	61.741	Poecilia_reticulata
ENSCSAVG00000005346	-	99	59.866	ENSPPYG00000013221	FARSB	99	59.866	Pongo_abelii
ENSCSAVG00000005346	-	90	54.059	ENSPCAG00000002757	FARSB	84	54.059	Procavia_capensis
ENSCSAVG00000005346	-	68	64.286	ENSPCOG00000028852	FARSB	99	64.286	Propithecus_coquereli
ENSCSAVG00000005346	-	99	60.368	ENSPVAG00000006985	FARSB	99	60.368	Pteropus_vampyrus
ENSCSAVG00000005346	-	99	51.338	ENSPNYG00000011433	farsb	99	51.338	Pundamilia_nyererei
ENSCSAVG00000005346	-	99	62.709	ENSPNAG00000021802	farsb	99	62.709	Pygocentrus_nattereri
ENSCSAVG00000005346	-	99	60.033	ENSRNOG00000014119	Farsb	99	60.033	Rattus_norvegicus
ENSCSAVG00000005346	-	92	59.745	ENSRBIG00000033191	FARSB	97	59.601	Rhinopithecus_bieti
ENSCSAVG00000005346	-	99	59.866	ENSRROG00000029388	FARSB	99	59.866	Rhinopithecus_roxellana
ENSCSAVG00000005346	-	99	45.915	YLR060W	FRS1	99	45.915	Saccharomyces_cerevisiae
ENSCSAVG00000005346	-	99	53.512	ENSSBOG00000019084	FARSB	99	53.512	Saimiri_boliviensis_boliviensis
ENSCSAVG00000005346	-	92	57.117	ENSSHAG00000015752	FARSB	99	57.117	Sarcophilus_harrisii
ENSCSAVG00000005346	-	99	60.702	ENSSFOG00015007850	farsb	99	60.702	Scleropages_formosus
ENSCSAVG00000005346	-	99	62.542	ENSSMAG00000020668	farsb	99	61.538	Scophthalmus_maximus
ENSCSAVG00000005346	-	99	61.873	ENSSDUG00000009685	farsb	99	59.867	Seriola_dumerili
ENSCSAVG00000005346	-	99	62.040	ENSSLDG00000025206	farsb	99	60.434	Seriola_lalandi_dorsalis
ENSCSAVG00000005346	-	63	58.170	ENSSARG00000005655	-	64	58.170	Sorex_araneus
ENSCSAVG00000005346	-	95	55.323	ENSSPUG00000002245	FARSB	99	55.323	Sphenodon_punctatus
ENSCSAVG00000005346	-	99	61.873	ENSSPAG00000007367	farsb	69	61.873	Stegastes_partitus
ENSCSAVG00000005346	-	99	56.093	ENSSSCG00000032016	-	99	56.093	Sus_scrofa
ENSCSAVG00000005346	-	99	60.870	ENSSSCG00000016226	-	99	60.870	Sus_scrofa
ENSCSAVG00000005346	-	96	58.232	ENSTGUG00000007788	FARSB	99	58.232	Taeniopygia_guttata
ENSCSAVG00000005346	-	99	62.375	ENSTRUG00000009483	farsb	70	62.375	Takifugu_rubripes
ENSCSAVG00000005346	-	99	62.479	ENSTNIG00000014310	farsb	99	62.479	Tetraodon_nigroviridis
ENSCSAVG00000005346	-	99	40.735	ENSTBEG00000003136	FARSB	99	40.735	Tupaia_belangeri
ENSCSAVG00000005346	-	87	59.901	ENSTTRG00000009082	FARSB	87	59.901	Tursiops_truncatus
ENSCSAVG00000005346	-	90	58.300	ENSUAMG00000024613	FARSB	98	58.300	Ursus_americanus
ENSCSAVG00000005346	-	99	60.870	ENSUMAG00000017995	FARSB	99	60.870	Ursus_maritimus
ENSCSAVG00000005346	-	92	57.636	ENSVPAG00000006844	FARSB	100	57.636	Vicugna_pacos
ENSCSAVG00000005346	-	99	60.368	ENSVVUG00000024025	FARSB	99	60.368	Vulpes_vulpes
ENSCSAVG00000005346	-	99	60.233	ENSXETG00000002934	farsb	99	60.233	Xenopus_tropicalis
ENSCSAVG00000005346	-	99	61.706	ENSXMAG00000008280	farsb	91	59.514	Xiphophorus_maculatus