EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000005559 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 19398 bases
Position: chrreftig_220:326934-346331
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000009447	ResIII	PF04851.15	4.3e-08	1	1
ENSCSAVP00000009446	ResIII	PF04851.15	4.8e-08	1	1
ENSCSAVP00000009448	ResIII	PF04851.15	6.7e-08	1	1
ENSCSAVP00000009445	ResIII	PF04851.15	2.6e-07	1	1
ENSCSAVP00000009444	ResIII	PF04851.15	2.6e-07	1	1
ENSCSAVP00000009443	ResIII	PF04851.15	2.9e-07	1	1
ENSCSAVP00000009442	ResIII	PF04851.15	2.9e-07	1	1
ENSCSAVP00000009441	ResIII	PF04851.15	3.1e-07	1	1
ENSCSAVP00000009448	BRK	PF07533.16	2.1e-15	1	1
ENSCSAVP00000009442	BRK	PF07533.16	2.3e-15	1	1
ENSCSAVP00000009444	BRK	PF07533.16	2.4e-15	1	1
ENSCSAVP00000009443	BRK	PF07533.16	2.5e-15	1	1
ENSCSAVP00000009445	BRK	PF07533.16	5.5e-15	1	1
ENSCSAVP00000009441	BRK	PF07533.16	9e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000009557	-	935	-	ENSCSAVP00000009440	296 (aa)	-	H2YVS9
ENSCSAVT00000009559	-	4063	-	ENSCSAVP00000009442	1336 (aa)	-	H2YVT1
ENSCSAVT00000009558	-	4349	-	ENSCSAVP00000009441	1317 (aa)	-	H2YVT0
ENSCSAVT00000009564	-	3104	-	ENSCSAVP00000009447	1021 (aa)	-	H2YVT6
ENSCSAVT00000009565	-	3063	-	ENSCSAVP00000009448	1021 (aa)	-	H2YVT7
ENSCSAVT00000009560	-	4102	-	ENSCSAVP00000009443	1355 (aa)	-	H2YVT2
ENSCSAVT00000009561	-	4305	-	ENSCSAVP00000009444	1311 (aa)	-	H2YVT3
ENSCSAVT00000009562	-	4256	-	ENSCSAVP00000009445	1306 (aa)	-	H2YVT4
ENSCSAVT00000009563	-	3267	-	ENSCSAVP00000009446	1047 (aa)	-	H2YVT5

Gene Model

Click here to download ENSCSAVG00000005559's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000005559's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000005559	-	64	36.257	ENSCSAVG00000007580	-	59	37.881
ENSCSAVG00000005559	-	62	38.802	ENSCSAVG00000004448	-	72	37.657
ENSCSAVG00000005559	-	62	37.664	ENSCSAVG00000004620	-	72	42.697

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000005559	-	98	55.486	WBGene00004204	swsn-4	80	50.391	Caenorhabditis_elegans
ENSCSAVG00000005559	-	86	54.505	YOR290C	SNF2	66	55.267	Saccharomyces_cerevisiae