EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000005602 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 12097 bases
Position: chrreftig_70:349554-361650
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000009537	SRP54	PF00448.22	1.2e-49	1	1
ENSCSAVP00000009535	SRP54	PF00448.22	1.2e-49	1	1
ENSCSAVP00000009534	SRP54	PF00448.22	1.2e-49	1	1
ENSCSAVP00000009536	SRP54	PF00448.22	1.7e-49	1	1
ENSCSAVP00000009536	SRP54_N	PF02881.19	2.8e-09	1	1
ENSCSAVP00000009534	SRP54_N	PF02881.19	3.5e-09	1	1
ENSCSAVP00000009537	SRP54_N	PF02881.19	3.9e-09	1	1
ENSCSAVP00000009535	SRP54_N	PF02881.19	4.1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000009652	-	1914	-	ENSCSAVP00000009535	637 (aa)	-	H2YW24
ENSCSAVT00000009653	-	1875	-	ENSCSAVP00000009536	624 (aa)	-	H2YW25
ENSCSAVT00000009651	-	1923	-	ENSCSAVP00000009534	640 (aa)	-	H2YW23
ENSCSAVT00000009654	-	1860	-	ENSCSAVP00000009537	619 (aa)	-	H2YW26

Gene Model

Click here to download ENSCSAVG00000005602's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000005602's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000005602	-	100	59.571	ENSG00000182934	SRPRA	99	58.986	Homo_sapiens
ENSCSAVG00000005602	-	100	59.153	ENSAPOG00000017588	srpra	99	59.668	Acanthochromis_polyacanthus
ENSCSAVG00000005602	-	100	58.806	ENSAMEG00000000117	SRPRA	99	59.140	Ailuropoda_melanoleuca
ENSCSAVG00000005602	-	100	58.333	ENSACIG00000021588	srpra	99	58.615	Amphilophus_citrinellus
ENSCSAVG00000005602	-	100	59.551	ENSAOCG00000018884	srpra	99	59.848	Amphiprion_ocellaris
ENSCSAVG00000005602	-	100	59.551	ENSAPEG00000022286	srpra	99	60.064	Amphiprion_percula
ENSCSAVG00000005602	-	100	58.346	ENSATEG00000023578	srpra	93	77.950	Anabas_testudineus
ENSCSAVG00000005602	-	94	57.423	ENSAPLG00000016079	SRPRA	99	57.655	Anas_platyrhynchos
ENSCSAVG00000005602	-	100	58.537	ENSACAG00000000108	SRPRA	99	58.689	Anolis_carolinensis
ENSCSAVG00000005602	-	100	59.242	ENSANAG00000020346	SRPRA	99	58.742	Aotus_nancymaae
ENSCSAVG00000005602	-	100	59.248	ENSACLG00000000518	srpra	99	59.817	Astatotilapia_calliptera
ENSCSAVG00000005602	-	100	59.360	ENSAMXG00000009975	srpra	99	59.360	Astyanax_mexicanus
ENSCSAVG00000005602	-	100	58.779	ENSBTAG00000014105	SRPRA	99	59.112	Bos_taurus
ENSCSAVG00000005602	-	99	51.411	WBGene00009521	F38A1.8	99	50.627	Caenorhabditis_elegans
ENSCSAVG00000005602	-	100	59.271	ENSCJAG00000008752	SRPRA	99	58.769	Callithrix_jacchus
ENSCSAVG00000005602	-	100	57.252	ENSCAFG00000010474	SRPRA	99	57.273	Canis_familiaris
ENSCSAVG00000005602	-	100	58.473	ENSCAFG00020010608	SRPRA	99	58.485	Canis_lupus_dingo
ENSCSAVG00000005602	-	100	59.877	ENSCHIG00000012423	SRPRA	99	59.265	Capra_hircus
ENSCSAVG00000005602	-	78	78.125	ENSTSYG00000005187	SRPRA	99	75.150	Carlito_syrichta
ENSCSAVG00000005602	-	95	58.224	ENSCAPG00000007098	SRPRA	100	74.150	Cavia_aperea
ENSCSAVG00000005602	-	100	58.806	ENSCPOG00000014976	SRPRA	100	74.150	Cavia_porcellus
ENSCSAVG00000005602	-	100	59.327	ENSCCAG00000025602	SRPRA	99	59.084	Cebus_capucinus
ENSCSAVG00000005602	-	100	59.265	ENSCATG00000039354	SRPRA	99	58.679	Cercocebus_atys
ENSCSAVG00000005602	-	100	59.084	ENSCLAG00000016839	SRPRA	99	59.021	Chinchilla_lanigera
ENSCSAVG00000005602	-	100	59.181	ENSCSAG00000002271	SRPRA	99	58.679	Chlorocebus_sabaeus
ENSCSAVG00000005602	-	100	57.943	ENSCPBG00000011128	SRPRA	99	57.360	Chrysemys_picta_bellii
ENSCSAVG00000005602	-	100	82.326	ENSCING00000008954	-	100	81.649	Ciona_intestinalis
ENSCSAVG00000005602	-	100	59.322	ENSCANG00000032337	SRPRA	99	58.887	Colobus_angolensis_palliatus
ENSCSAVG00000005602	-	100	59.633	ENSCGRG00001017670	Srpr	99	60.123	Cricetulus_griseus_chok1gshd
ENSCSAVG00000005602	-	100	59.633	ENSCGRG00000009892	Srpr	90	80.000	Cricetulus_griseus_crigri
ENSCSAVG00000005602	-	100	59.840	ENSCSEG00000002374	srpra	99	60.350	Cynoglossus_semilaevis
ENSCSAVG00000005602	-	100	58.270	ENSCVAG00000019881	srpra	99	58.270	Cyprinodon_variegatus
ENSCSAVG00000005602	-	100	58.725	ENSDARG00000061124	srpra	99	58.610	Danio_rerio
ENSCSAVG00000005602	-	100	59.063	ENSDNOG00000010821	SRPRA	99	58.636	Dasypus_novemcinctus
ENSCSAVG00000005602	-	100	59.237	ENSDORG00000016719	Srpr	99	59.908	Dipodomys_ordii
ENSCSAVG00000005602	-	100	52.623	FBgn0010391	Gtp-bp	100	52.932	Drosophila_melanogaster
ENSCSAVG00000005602	-	100	58.346	ENSETEG00000013956	SRPRA	99	58.218	Echinops_telfairi
ENSCSAVG00000005602	-	52	74.688	ENSEBUG00000002602	srpra	89	65.206	Eptatretus_burgeri
ENSCSAVG00000005602	-	100	60.123	ENSEASG00005022980	SRPRA	99	59.663	Equus_asinus_asinus
ENSCSAVG00000005602	-	100	60.123	ENSECAG00000014692	SRPRA	99	59.663	Equus_caballus
ENSCSAVG00000005602	-	100	55.420	ENSEEUG00000007920	SRPRA	99	55.130	Erinaceus_europaeus
ENSCSAVG00000005602	-	100	58.974	ENSELUG00000017643	srpra	99	59.578	Esox_lucius
ENSCSAVG00000005602	-	79	53.119	ENSFCAG00000030894	-	99	52.372	Felis_catus
ENSCSAVG00000005602	-	100	58.939	ENSFCAG00000011274	-	99	58.359	Felis_catus
ENSCSAVG00000005602	-	99	55.178	ENSFALG00000005048	SRPRA	99	55.641	Ficedula_albicollis
ENSCSAVG00000005602	-	100	58.779	ENSFDAG00000016229	SRPRA	85	80.303	Fukomys_damarensis
ENSCSAVG00000005602	-	100	59.480	ENSFHEG00000016959	srpra	99	60.092	Fundulus_heteroclitus
ENSCSAVG00000005602	-	100	59.119	ENSGMOG00000013244	srpra	99	59.906	Gadus_morhua
ENSCSAVG00000005602	-	100	57.798	ENSGALG00000030759	SRPRA	99	57.863	Gallus_gallus
ENSCSAVG00000005602	-	100	58.106	ENSGAFG00000000453	srpra	99	58.525	Gambusia_affinis
ENSCSAVG00000005602	-	100	58.410	ENSGACG00000006550	srpra	99	58.257	Gasterosteus_aculeatus
ENSCSAVG00000005602	-	100	58.308	ENSGAGG00000021157	SRPRA	99	57.855	Gopherus_agassizii
ENSCSAVG00000005602	-	100	59.571	ENSGGOG00000012962	SRPRA	99	58.986	Gorilla_gorilla
ENSCSAVG00000005602	-	100	59.098	ENSHBUG00000000119	srpra	99	59.665	Haplochromis_burtoni
ENSCSAVG00000005602	-	100	59.418	ENSHGLG00000001597	SRPR	94	80.303	Heterocephalus_glaber_female
ENSCSAVG00000005602	-	100	59.418	ENSHGLG00100006449	SRPR	94	80.303	Heterocephalus_glaber_male
ENSCSAVG00000005602	-	100	58.556	ENSHCOG00000010749	srpra	99	58.931	Hippocampus_comes
ENSCSAVG00000005602	-	94	57.774	ENSIPUG00000000867	srpra	99	57.447	Ictalurus_punctatus
ENSCSAVG00000005602	-	100	58.473	ENSSTOG00000009897	SRPRA	99	58.833	Ictidomys_tridecemlineatus
ENSCSAVG00000005602	-	100	58.994	ENSJJAG00000020272	Srpr	99	59.476	Jaculus_jaculus
ENSCSAVG00000005602	-	100	59.271	ENSKMAG00000002280	srpra	99	60.976	Kryptolebias_marmoratus
ENSCSAVG00000005602	-	100	58.716	ENSLBEG00000009608	srpra	99	59.327	Labrus_bergylta
ENSCSAVG00000005602	-	100	58.204	ENSLACG00000017781	SRPRA	99	58.879	Latimeria_chalumnae
ENSCSAVG00000005602	-	100	59.327	ENSLOCG00000002733	srpra	99	59.021	Lepisosteus_oculatus
ENSCSAVG00000005602	-	100	58.600	ENSLAFG00000010252	SRPRA	99	58.779	Loxodonta_africana
ENSCSAVG00000005602	-	100	59.181	ENSMFAG00000032606	SRPRA	99	58.679	Macaca_fascicularis
ENSCSAVG00000005602	-	100	59.181	ENSMMUG00000007938	SRPRA	99	58.679	Macaca_mulatta
ENSCSAVG00000005602	-	100	59.029	ENSMNEG00000030709	SRPRA	99	58.525	Macaca_nemestrina
ENSCSAVG00000005602	-	100	59.265	ENSMLEG00000043404	SRPRA	99	58.679	Mandrillus_leucophaeus
ENSCSAVG00000005602	-	100	59.056	ENSMAMG00000000473	srpra	99	58.752	Mastacembelus_armatus
ENSCSAVG00000005602	-	100	59.248	ENSMZEG00005013432	srpra	99	59.817	Maylandia_zebra
ENSCSAVG00000005602	-	94	57.213	ENSMGAG00000000732	SRPRA	99	57.447	Meleagris_gallopavo
ENSCSAVG00000005602	-	100	59.153	ENSMAUG00000015648	Srpr	99	60.123	Mesocricetus_auratus
ENSCSAVG00000005602	-	100	58.636	ENSMICG00000015981	SRPRA	99	58.525	Microcebus_murinus
ENSCSAVG00000005602	-	100	59.663	ENSMOCG00000008311	Srpr	99	59.816	Microtus_ochrogaster
ENSCSAVG00000005602	-	100	59.409	ENSMMOG00000005019	srpra	99	59.219	Mola_mola
ENSCSAVG00000005602	-	100	58.462	ENSMODG00000004576	-	99	58.706	Monodelphis_domestica
ENSCSAVG00000005602	-	100	57.511	ENSMALG00000011343	srpra	99	58.850	Monopterus_albus
ENSCSAVG00000005602	-	100	58.769	MGP_CAROLIEiJ_G0031951	Srpr	86	80.303	Mus_caroli
ENSCSAVG00000005602	-	100	59.447	ENSMUSG00000032042	Srpr	86	80.303	Mus_musculus
ENSCSAVG00000005602	-	100	59.202	MGP_PahariEiJ_G0014816	Srpr	86	80.303	Mus_pahari
ENSCSAVG00000005602	-	100	56.369	MGP_SPRETEiJ_G0033075	Srpr	99	56.361	Mus_spretus
ENSCSAVG00000005602	-	100	58.752	ENSMPUG00000006626	SRPRA	99	58.769	Mustela_putorius_furo
ENSCSAVG00000005602	-	100	59.660	ENSMLUG00000017334	SRPRA	99	59.380	Myotis_lucifugus
ENSCSAVG00000005602	-	100	58.699	ENSNGAG00000015686	Srpr	99	59.105	Nannospalax_galili
ENSCSAVG00000005602	-	100	59.726	ENSNBRG00000017311	srpra	99	59.665	Neolamprologus_brichardi
ENSCSAVG00000005602	-	99	56.703	ENSNLEG00000007467	SRPRA	99	58.387	Nomascus_leucogenys
ENSCSAVG00000005602	-	94	56.311	ENSMEUG00000004956	SRPRA	99	57.119	Notamacropus_eugenii
ENSCSAVG00000005602	-	100	55.420	ENSOPRG00000013160	SRPRA	99	55.590	Ochotona_princeps
ENSCSAVG00000005602	-	100	59.237	ENSODEG00000004730	SRPRA	99	59.112	Octodon_degus
ENSCSAVG00000005602	-	100	59.513	ENSONIG00000005324	srpra	99	59.513	Oreochromis_niloticus
ENSCSAVG00000005602	-	100	59.299	ENSOCUG00000017057	SRPRA	99	58.923	Oryctolagus_cuniculus
ENSCSAVG00000005602	-	85	78.344	ENSORLG00000014676	srpra	91	78.125	Oryzias_latipes
ENSCSAVG00000005602	-	100	57.669	ENSORLG00020009240	srpra	99	58.410	Oryzias_latipes_hni
ENSCSAVG00000005602	-	100	59.277	ENSORLG00015015405	srpra	99	59.277	Oryzias_latipes_hsok
ENSCSAVG00000005602	-	100	59.113	ENSOMEG00000005872	srpra	99	59.429	Oryzias_melastigma
ENSCSAVG00000005602	-	100	58.959	ENSOGAG00000008926	SRPRA	99	58.525	Otolemur_garnettii
ENSCSAVG00000005602	-	100	58.168	ENSOARG00000012397	SRPRA	99	58.104	Ovis_aries
ENSCSAVG00000005602	-	100	59.571	ENSPPAG00000030813	SRPRA	99	58.986	Pan_paniscus
ENSCSAVG00000005602	-	100	58.939	ENSPPRG00000001542	SRPRA	99	58.359	Panthera_pardus
ENSCSAVG00000005602	-	100	58.788	ENSPTIG00000006989	SRPRA	99	58.207	Panthera_tigris_altaica
ENSCSAVG00000005602	-	100	59.571	ENSPTRG00000028360	SRPRA	99	58.986	Pan_troglodytes
ENSCSAVG00000005602	-	100	59.181	ENSPANG00000010858	SRPRA	99	58.679	Papio_anubis
ENSCSAVG00000005602	-	100	57.680	ENSPKIG00000016106	srpra	99	57.680	Paramormyrops_kingsleyae
ENSCSAVG00000005602	-	94	57.003	ENSPSIG00000012009	SRPRA	99	56.678	Pelodiscus_sinensis
ENSCSAVG00000005602	-	100	58.104	ENSPMGG00000001393	srpra	99	59.505	Periophthalmus_magnuspinnatus
ENSCSAVG00000005602	-	100	59.816	ENSPEMG00000018279	Srpr	99	59.969	Peromyscus_maniculatus_bairdii
ENSCSAVG00000005602	-	100	54.854	ENSPMAG00000009559	srpra	99	54.854	Petromyzon_marinus
ENSCSAVG00000005602	-	100	57.274	ENSPCIG00000010207	SRPRA	99	57.822	Phascolarctos_cinereus
ENSCSAVG00000005602	-	100	58.193	ENSPFOG00000003114	srpra	99	59.265	Poecilia_formosa
ENSCSAVG00000005602	-	100	59.325	ENSPLAG00000007323	srpra	99	60.032	Poecilia_latipinna
ENSCSAVG00000005602	-	100	59.615	ENSPMEG00000015658	srpra	99	60.000	Poecilia_mexicana
ENSCSAVG00000005602	-	100	59.164	ENSPREG00000004937	srpra	96	77.812	Poecilia_reticulata
ENSCSAVG00000005602	-	88	80.000	ENSPPYG00000004045	SRPRA	99	80.000	Pongo_abelii
ENSCSAVG00000005602	-	64	82.812	ENSPCAG00000003801	-	63	82.812	Procavia_capensis
ENSCSAVG00000005602	-	100	58.725	ENSPCOG00000025726	SRPRA	99	58.769	Propithecus_coquereli
ENSCSAVG00000005602	-	100	59.231	ENSPVAG00000000993	SRPRA	99	58.796	Pteropus_vampyrus
ENSCSAVG00000005602	-	100	59.248	ENSPNYG00000012371	srpra	99	59.817	Pundamilia_nyererei
ENSCSAVG00000005602	-	100	58.689	ENSPNAG00000013476	srpra	99	58.563	Pygocentrus_nattereri
ENSCSAVG00000005602	-	100	59.327	ENSRNOG00000010543	Srpra	99	59.969	Rattus_norvegicus
ENSCSAVG00000005602	-	100	59.265	ENSRBIG00000008702	SRPRA	99	58.833	Rhinopithecus_bieti
ENSCSAVG00000005602	-	100	59.394	ENSRROG00000029494	SRPRA	99	58.663	Rhinopithecus_roxellana
ENSCSAVG00000005602	-	55	39.467	YDR292C	-	54	40.988	Saccharomyces_cerevisiae
ENSCSAVG00000005602	-	100	59.029	ENSSBOG00000035892	SRPRA	99	58.525	Saimiri_boliviensis_boliviensis
ENSCSAVG00000005602	-	94	57.541	ENSSHAG00000009168	SRPRA	99	57.869	Sarcophilus_harrisii
ENSCSAVG00000005602	-	100	58.710	ENSSFOG00015008837	srpra	99	59.295	Scleropages_formosus
ENSCSAVG00000005602	-	100	58.599	ENSSMAG00000002783	srpra	99	57.795	Scophthalmus_maximus
ENSCSAVG00000005602	-	100	58.946	ENSSDUG00000013920	srpra	99	59.011	Seriola_dumerili
ENSCSAVG00000005602	-	100	58.436	ENSSLDG00000008601	srpra	93	59.299	Seriola_lalandi_dorsalis
ENSCSAVG00000005602	-	82	70.732	ENSSARG00000012434	SRPRA	86	70.732	Sorex_araneus
ENSCSAVG00000005602	-	100	58.006	ENSSPUG00000018221	SRPRA	99	58.459	Sphenodon_punctatus
ENSCSAVG00000005602	-	100	59.271	ENSSPAG00000005103	srpra	99	59.271	Stegastes_partitus
ENSCSAVG00000005602	-	100	59.513	ENSSSCG00000015227	SRPRA	99	59.140	Sus_scrofa
ENSCSAVG00000005602	-	94	54.992	ENSTGUG00000000815	SRPRA	99	55.483	Taeniopygia_guttata
ENSCSAVG00000005602	-	100	58.110	ENSTRUG00000006856	srpra	99	59.084	Takifugu_rubripes
ENSCSAVG00000005602	-	100	54.985	ENSTNIG00000010316	srpra	99	54.985	Tetraodon_nigroviridis
ENSCSAVG00000005602	-	100	58.642	ENSTTRG00000001558	SRPRA	99	58.488	Tursiops_truncatus
ENSCSAVG00000005602	-	100	58.779	ENSUAMG00000005510	SRPRA	99	58.663	Ursus_americanus
ENSCSAVG00000005602	-	95	55.200	ENSUMAG00000002269	SRPRA	99	55.377	Ursus_maritimus
ENSCSAVG00000005602	-	69	82.812	ENSVPAG00000001077	SRPRA	75	82.812	Vicugna_pacos
ENSCSAVG00000005602	-	100	58.245	ENSVVUG00000020094	SRPRA	99	58.563	Vulpes_vulpes
ENSCSAVG00000005602	-	100	49.924	ENSXETG00000003920	srpra	99	49.469	Xenopus_tropicalis
ENSCSAVG00000005602	-	76	78.025	ENSXCOG00000001286	srpra	92	77.812	Xiphophorus_couchianus
ENSCSAVG00000005602	-	100	58.218	ENSXMAG00000028401	srpra	99	58.877	Xiphophorus_maculatus