EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000005608 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 22006 bases
Position: chrreftig_16:809450-831455
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000009556	PRP21_like_P	PF12230.8	3.5e-43	1	1
ENSCSAVP00000009555	PRP21_like_P	PF12230.8	3.9e-41	1	1
ENSCSAVP00000009554	PRP21_like_P	PF12230.8	4.9e-41	1	1
ENSCSAVP00000009553	PRP21_like_P	PF12230.8	6.1e-39	1	1
ENSCSAVP00000009557	PRP21_like_P	PF12230.8	3.9e-38	1	2
ENSCSAVP00000009557	PRP21_like_P	PF12230.8	3.9e-38	2	2
ENSCSAVP00000009552	PRP21_like_P	PF12230.8	8.8e-20	1	1
ENSCSAVP00000009556	Surp	PF01805.20	5e-41	1	2
ENSCSAVP00000009556	Surp	PF01805.20	5e-41	2	2
ENSCSAVP00000009553	Surp	PF01805.20	6.1e-41	1	2
ENSCSAVP00000009553	Surp	PF01805.20	6.1e-41	2	2
ENSCSAVP00000009557	Surp	PF01805.20	6.7e-41	1	2
ENSCSAVP00000009557	Surp	PF01805.20	6.7e-41	2	2
ENSCSAVP00000009555	Surp	PF01805.20	7.1e-41	1	2
ENSCSAVP00000009555	Surp	PF01805.20	7.1e-41	2	2
ENSCSAVP00000009554	Surp	PF01805.20	7.6e-41	1	2
ENSCSAVP00000009554	Surp	PF01805.20	7.6e-41	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000009670	-	2205	-	ENSCSAVP00000009553	706 (aa)	-	H2YW42
ENSCSAVT00000009671	-	2445	-	ENSCSAVP00000009554	776 (aa)	-	H2YW43
ENSCSAVT00000009672	-	2379	-	ENSCSAVP00000009555	754 (aa)	-	H2YW44
ENSCSAVT00000009673	-	2070	-	ENSCSAVP00000009556	651 (aa)	-	H2YW45
ENSCSAVT00000009674	-	2366	-	ENSCSAVP00000009557	749 (aa)	-	H2YW46
ENSCSAVT00000009669	-	2479	-	ENSCSAVP00000009552	455 (aa)	-	H2YW41

Gene Model

Click here to download ENSCSAVG00000005608's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000005608's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000005608	-	92	62.712	ENSG00000099995	SF3A1	96	51.871	Homo_sapiens
ENSCSAVG00000005608	-	92	65.972	ENSAPOG00000020465	sf3a1	92	63.158	Acanthochromis_polyacanthus
ENSCSAVG00000005608	-	92	61.864	ENSAMEG00000007737	SF3A1	96	51.484	Ailuropoda_melanoleuca
ENSCSAVG00000005608	-	92	65.854	ENSACIG00000020672	sf3a1	87	67.029	Amphilophus_citrinellus
ENSCSAVG00000005608	-	92	65.972	ENSAOCG00000003060	sf3a1	92	63.158	Amphiprion_ocellaris
ENSCSAVG00000005608	-	92	65.972	ENSAPEG00000010735	sf3a1	92	63.158	Amphiprion_percula
ENSCSAVG00000005608	-	85	45.388	ENSATEG00000021201	sf3a1	91	63.158	Anabas_testudineus
ENSCSAVG00000005608	-	91	63.559	ENSAPLG00000009057	SF3A1	99	51.210	Anas_platyrhynchos
ENSCSAVG00000005608	-	91	64.912	ENSACAG00000009415	SF3A1	95	59.859	Anolis_carolinensis
ENSCSAVG00000005608	-	92	62.712	ENSANAG00000032045	SF3A1	96	51.742	Aotus_nancymaae
ENSCSAVG00000005608	-	93	61.607	ENSACLG00000012622	sf3a1	97	50.450	Astatotilapia_calliptera
ENSCSAVG00000005608	-	92	65.398	ENSAMXG00000005382	sf3a1	92	63.158	Astyanax_mexicanus
ENSCSAVG00000005608	-	92	62.712	ENSBTAG00000003390	SF3A1	96	51.484	Bos_taurus
ENSCSAVG00000005608	-	100	43.268	WBGene00004188	prp-21	91	50.534	Caenorhabditis_elegans
ENSCSAVG00000005608	-	92	62.712	ENSCJAG00000010370	SF3A1	96	51.742	Callithrix_jacchus
ENSCSAVG00000005608	-	92	61.864	ENSCAFG00000012559	SF3A1	96	51.484	Canis_familiaris
ENSCSAVG00000005608	-	92	61.864	ENSCAFG00020000838	SF3A1	96	51.484	Canis_lupus_dingo
ENSCSAVG00000005608	-	92	62.712	ENSCHIG00000018642	SF3A1	96	51.484	Capra_hircus
ENSCSAVG00000005608	-	92	62.712	ENSTSYG00000004739	SF3A1	96	51.613	Carlito_syrichta
ENSCSAVG00000005608	-	76	52.608	ENSCAPG00000015414	SF3A1	97	42.714	Cavia_aperea
ENSCSAVG00000005608	-	92	62.712	ENSCPOG00000014589	SF3A1	96	51.484	Cavia_porcellus
ENSCSAVG00000005608	-	92	62.712	ENSCCAG00000032006	SF3A1	96	51.742	Cebus_capucinus
ENSCSAVG00000005608	-	92	62.712	ENSCATG00000029241	SF3A1	96	51.742	Cercocebus_atys
ENSCSAVG00000005608	-	91	64.286	ENSCLAG00000006508	SF3A1	96	51.484	Chinchilla_lanigera
ENSCSAVG00000005608	-	92	62.712	ENSCSAG00000009470	SF3A1	96	51.742	Chlorocebus_sabaeus
ENSCSAVG00000005608	-	62	65.649	ENSCHOG00000005201	SF3A1	62	67.557	Choloepus_hoffmanni
ENSCSAVG00000005608	-	91	65.179	ENSCPBG00000007595	SF3A1	97	51.403	Chrysemys_picta_bellii
ENSCSAVG00000005608	-	100	76.380	ENSCING00000008526	-	98	74.202	Ciona_intestinalis
ENSCSAVG00000005608	-	92	62.712	ENSCANG00000033564	SF3A1	96	51.742	Colobus_angolensis_palliatus
ENSCSAVG00000005608	-	90	65.179	ENSCGRG00001008933	Sf3a1	96	52.000	Cricetulus_griseus_chok1gshd
ENSCSAVG00000005608	-	90	65.179	ENSCGRG00000006127	Sf3a1	96	52.000	Cricetulus_griseus_crigri
ENSCSAVG00000005608	-	100	50.385	ENSCSEG00000010792	sf3a1	97	50.900	Cynoglossus_semilaevis
ENSCSAVG00000005608	-	100	50.708	ENSCVAG00000004560	sf3a1	93	61.404	Cyprinodon_variegatus
ENSCSAVG00000005608	-	85	44.869	ENSDARG00000041887	sf3a1	92	68.125	Danio_rerio
ENSCSAVG00000005608	-	99	62.712	ENSDNOG00000010629	SF3A1	96	51.737	Dasypus_novemcinctus
ENSCSAVG00000005608	-	92	62.712	ENSDORG00000005613	Sf3a1	96	51.742	Dipodomys_ordii
ENSCSAVG00000005608	-	91	47.706	FBgn0266917	Sf3a1	85	59.672	Drosophila_melanogaster
ENSCSAVG00000005608	-	74	54.924	ENSETEG00000017194	SF3A1	95	48.669	Echinops_telfairi
ENSCSAVG00000005608	-	93	65.455	ENSEBUG00000001285	sf3a1	81	68.421	Eptatretus_burgeri
ENSCSAVG00000005608	-	92	62.712	ENSEASG00005010254	SF3A1	96	51.613	Equus_asinus_asinus
ENSCSAVG00000005608	-	92	62.712	ENSECAG00000023962	SF3A1	96	51.613	Equus_caballus
ENSCSAVG00000005608	-	79	68.852	ENSEEUG00000003159	SF3A1	83	68.852	Erinaceus_europaeus
ENSCSAVG00000005608	-	99	63.393	ENSELUG00000022578	sf3a1	97	50.000	Esox_lucius
ENSCSAVG00000005608	-	92	61.864	ENSFCAG00000011932	SF3A1	96	51.484	Felis_catus
ENSCSAVG00000005608	-	91	63.559	ENSFALG00000006944	SF3A1	96	51.154	Ficedula_albicollis
ENSCSAVG00000005608	-	92	62.712	ENSFDAG00000009560	SF3A1	96	51.484	Fukomys_damarensis
ENSCSAVG00000005608	-	91	65.179	ENSFHEG00000010866	sf3a1	93	64.103	Fundulus_heteroclitus
ENSCSAVG00000005608	-	100	50.324	ENSGMOG00000016024	sf3a1	97	49.871	Gadus_morhua
ENSCSAVG00000005608	-	91	63.559	ENSGALG00000007937	SF3A1	86	67.636	Gallus_gallus
ENSCSAVG00000005608	-	100	51.026	ENSGAFG00000009111	sf3a1	93	63.248	Gambusia_affinis
ENSCSAVG00000005608	-	92	67.254	ENSGACG00000011893	sf3a1	97	49.299	Gasterosteus_aculeatus
ENSCSAVG00000005608	-	86	60.759	ENSGAGG00000000762	SF3A1	96	50.333	Gopherus_agassizii
ENSCSAVG00000005608	-	92	62.712	ENSGGOG00000012631	SF3A1	96	51.871	Gorilla_gorilla
ENSCSAVG00000005608	-	100	50.127	ENSHBUG00000015795	sf3a1	97	50.322	Haplochromis_burtoni
ENSCSAVG00000005608	-	92	62.712	ENSHGLG00000007907	SF3A1	96	51.613	Heterocephalus_glaber_female
ENSCSAVG00000005608	-	92	62.712	ENSHGLG00100013799	SF3A1	96	51.613	Heterocephalus_glaber_male
ENSCSAVG00000005608	-	100	51.285	ENSHCOG00000015423	sf3a1	98	50.721	Hippocampus_comes
ENSCSAVG00000005608	-	88	66.429	ENSIPUG00000002470	sf3a1	88	67.266	Ictalurus_punctatus
ENSCSAVG00000005608	-	92	62.712	ENSSTOG00000013892	SF3A1	97	51.003	Ictidomys_tridecemlineatus
ENSCSAVG00000005608	-	91	64.286	ENSJJAG00000022566	Sf3a1	96	51.742	Jaculus_jaculus
ENSCSAVG00000005608	-	99	61.607	ENSKMAG00000002400	sf3a1	92	60.684	Kryptolebias_marmoratus
ENSCSAVG00000005608	-	92	67.018	ENSLBEG00000022974	sf3a1	97	50.459	Labrus_bergylta
ENSCSAVG00000005608	-	91	67.544	ENSLACG00000003565	SF3A1	97	52.598	Latimeria_chalumnae
ENSCSAVG00000005608	-	93	65.862	ENSLOCG00000008251	sf3a1	97	51.010	Lepisosteus_oculatus
ENSCSAVG00000005608	-	92	62.712	ENSLAFG00000000448	SF3A1	96	51.742	Loxodonta_africana
ENSCSAVG00000005608	-	91	53.750	ENSLAFG00000026032	-	97	36.641	Loxodonta_africana
ENSCSAVG00000005608	-	92	62.712	ENSMFAG00000031979	SF3A1	96	51.613	Macaca_fascicularis
ENSCSAVG00000005608	-	92	62.712	ENSMMUG00000005547	SF3A1	96	51.613	Macaca_mulatta
ENSCSAVG00000005608	-	92	62.712	ENSMNEG00000037229	SF3A1	96	51.613	Macaca_nemestrina
ENSCSAVG00000005608	-	92	62.712	ENSMLEG00000041908	SF3A1	96	51.742	Mandrillus_leucophaeus
ENSCSAVG00000005608	-	93	66.319	ENSMAMG00000006460	sf3a1	90	63.158	Mastacembelus_armatus
ENSCSAVG00000005608	-	93	61.607	ENSMZEG00005009633	sf3a1	97	50.450	Maylandia_zebra
ENSCSAVG00000005608	-	91	63.559	ENSMGAG00000001330	SF3A1	89	67.636	Meleagris_gallopavo
ENSCSAVG00000005608	-	86	65.179	ENSMAUG00000020317	Sf3a1	94	47.715	Mesocricetus_auratus
ENSCSAVG00000005608	-	92	62.712	ENSMICG00000010038	SF3A1	96	51.680	Microcebus_murinus
ENSCSAVG00000005608	-	90	65.179	ENSMOCG00000008438	Sf3a1	96	52.000	Microtus_ochrogaster
ENSCSAVG00000005608	-	92	67.279	ENSMMOG00000015588	sf3a1	92	63.158	Mola_mola
ENSCSAVG00000005608	-	92	62.712	ENSMODG00000009270	SF3A1	96	51.410	Monodelphis_domestica
ENSCSAVG00000005608	-	100	50.000	ENSMALG00000000148	sf3a1	94	63.158	Monopterus_albus
ENSCSAVG00000005608	-	90	65.179	MGP_CAROLIEiJ_G0016029	Sf3a1	96	51.358	Mus_caroli
ENSCSAVG00000005608	-	90	65.179	ENSMUSG00000002129	Sf3a1	96	51.358	Mus_musculus
ENSCSAVG00000005608	-	90	65.179	MGP_PahariEiJ_G0016862	Sf3a1	96	51.229	Mus_pahari
ENSCSAVG00000005608	-	90	65.179	MGP_SPRETEiJ_G0016870	Sf3a1	96	51.358	Mus_spretus
ENSCSAVG00000005608	-	91	61.864	ENSMPUG00000013144	SF3A1	96	51.484	Mustela_putorius_furo
ENSCSAVG00000005608	-	92	62.712	ENSMLUG00000002139	SF3A1	96	51.613	Myotis_lucifugus
ENSCSAVG00000005608	-	91	64.286	ENSNGAG00000016977	Sf3a1	96	51.742	Nannospalax_galili
ENSCSAVG00000005608	-	100	49.936	ENSNBRG00000016642	sf3a1	97	50.193	Neolamprologus_brichardi
ENSCSAVG00000005608	-	92	62.712	ENSNLEG00000003686	SF3A1	96	51.742	Nomascus_leucogenys
ENSCSAVG00000005608	-	87	60.000	ENSMEUG00000008741	SF3A1	88	63.051	Notamacropus_eugenii
ENSCSAVG00000005608	-	92	62.712	ENSOPRG00000016636	SF3A1	96	51.484	Ochotona_princeps
ENSCSAVG00000005608	-	92	63.559	ENSODEG00000002571	SF3A1	96	51.613	Octodon_degus
ENSCSAVG00000005608	-	92	65.734	ENSONIG00000010848	sf3a1	94	61.404	Oreochromis_niloticus
ENSCSAVG00000005608	-	92	61.864	ENSOCUG00000007633	SF3A1	96	51.484	Oryctolagus_cuniculus
ENSCSAVG00000005608	-	53	66.202	ENSORLG00000013050	sf3a1	92	60.494	Oryzias_latipes
ENSCSAVG00000005608	-	90	66.202	ENSORLG00020003236	sf3a1	89	55.102	Oryzias_latipes_hni
ENSCSAVG00000005608	-	85	43.478	ENSORLG00015017411	sf3a1	92	64.035	Oryzias_latipes_hsok
ENSCSAVG00000005608	-	92	66.202	ENSOMEG00000013362	sf3a1	97	51.285	Oryzias_melastigma
ENSCSAVG00000005608	-	92	62.712	ENSOGAG00000012931	SF3A1	96	51.742	Otolemur_garnettii
ENSCSAVG00000005608	-	92	62.712	ENSOARG00000006849	SF3A1	84	67.391	Ovis_aries
ENSCSAVG00000005608	-	92	62.712	ENSPPAG00000041790	SF3A1	92	61.600	Pan_paniscus
ENSCSAVG00000005608	-	92	61.864	ENSPPRG00000004391	SF3A1	96	51.484	Panthera_pardus
ENSCSAVG00000005608	-	92	61.017	ENSPTIG00000000844	SF3A1	99	51.355	Panthera_tigris_altaica
ENSCSAVG00000005608	-	92	62.712	ENSPTRG00000014240	SF3A1	96	51.871	Pan_troglodytes
ENSCSAVG00000005608	-	92	62.712	ENSPANG00000020772	SF3A1	96	51.742	Papio_anubis
ENSCSAVG00000005608	-	88	69.565	ENSPSIG00000012803	SF3A1	96	69.565	Pelodiscus_sinensis
ENSCSAVG00000005608	-	92	63.964	ENSPMGG00000023096	sf3a1	100	51.429	Periophthalmus_magnuspinnatus
ENSCSAVG00000005608	-	90	65.179	ENSPEMG00000009494	Sf3a1	96	52.000	Peromyscus_maniculatus_bairdii
ENSCSAVG00000005608	-	73	54.389	ENSPMAG00000007139	-	94	52.557	Petromyzon_marinus
ENSCSAVG00000005608	-	92	62.712	ENSPCIG00000022692	SF3A1	96	51.742	Phascolarctos_cinereus
ENSCSAVG00000005608	-	96	45.710	ENSPFOG00000016768	sf3a1	89	64.035	Poecilia_formosa
ENSCSAVG00000005608	-	100	50.897	ENSPLAG00000017268	sf3a1	93	64.035	Poecilia_latipinna
ENSCSAVG00000005608	-	87	47.741	ENSPMEG00000019811	sf3a1	97	48.580	Poecilia_mexicana
ENSCSAVG00000005608	-	100	50.769	ENSPREG00000010347	sf3a1	93	64.035	Poecilia_reticulata
ENSCSAVG00000005608	-	92	62.712	ENSPPYG00000011707	SF3A1	96	51.742	Pongo_abelii
ENSCSAVG00000005608	-	53	62.712	ENSPCAG00000003266	SF3A1	56	46.411	Procavia_capensis
ENSCSAVG00000005608	-	92	62.712	ENSPCOG00000026630	SF3A1	96	51.809	Propithecus_coquereli
ENSCSAVG00000005608	-	89	62.712	ENSPVAG00000017719	SF3A1	94	50.991	Pteropus_vampyrus
ENSCSAVG00000005608	-	100	50.000	ENSPNYG00000018706	sf3a1	97	50.322	Pundamilia_nyererei
ENSCSAVG00000005608	-	99	64.286	ENSPNAG00000003721	sf3a1	92	64.035	Pygocentrus_nattereri
ENSCSAVG00000005608	-	90	65.179	ENSRNOG00000005218	Sf3a1	96	51.358	Rattus_norvegicus
ENSCSAVG00000005608	-	92	62.712	ENSRBIG00000032167	SF3A1	96	51.742	Rhinopithecus_bieti
ENSCSAVG00000005608	-	92	62.712	ENSRROG00000044908	SF3A1	96	51.742	Rhinopithecus_roxellana
ENSCSAVG00000005608	-	87	62.712	ENSSBOG00000021960	SF3A1	87	66.854	Saimiri_boliviensis_boliviensis
ENSCSAVG00000005608	-	91	64.286	ENSSHAG00000003666	SF3A1	97	49.681	Sarcophilus_harrisii
ENSCSAVG00000005608	-	91	64.286	ENSSFOG00015004579	sf3a1	91	64.035	Scleropages_formosus
ENSCSAVG00000005608	-	100	50.000	ENSSMAG00000004275	sf3a1	97	50.193	Scophthalmus_maximus
ENSCSAVG00000005608	-	92	65.854	ENSSDUG00000022219	sf3a1	92	63.158	Seriola_dumerili
ENSCSAVG00000005608	-	92	65.854	ENSSLDG00000012642	sf3a1	92	63.158	Seriola_lalandi_dorsalis
ENSCSAVG00000005608	-	92	62.712	ENSSARG00000005960	SF3A1	99	48.645	Sorex_araneus
ENSCSAVG00000005608	-	91	65.812	ENSSPUG00000018863	SF3A1	87	66.909	Sphenodon_punctatus
ENSCSAVG00000005608	-	92	65.854	ENSSPAG00000011856	sf3a1	92	63.158	Stegastes_partitus
ENSCSAVG00000005608	-	92	62.712	ENSSSCG00000010002	SF3A1	96	51.484	Sus_scrofa
ENSCSAVG00000005608	-	91	61.667	ENSTGUG00000010547	SF3A1	99	51.269	Taeniopygia_guttata
ENSCSAVG00000005608	-	100	61.538	ENSTRUG00000006118	sf3a1	97	50.643	Takifugu_rubripes
ENSCSAVG00000005608	-	54	61.682	ENSTNIG00000005713	sf3a1	91	61.702	Tetraodon_nigroviridis
ENSCSAVG00000005608	-	100	46.907	ENSTBEG00000012771	SF3A1	96	47.613	Tupaia_belangeri
ENSCSAVG00000005608	-	92	62.712	ENSTTRG00000001535	SF3A1	96	51.418	Tursiops_truncatus
ENSCSAVG00000005608	-	91	58.929	ENSUAMG00000006750	SF3A1	95	50.975	Ursus_americanus
ENSCSAVG00000005608	-	99	61.864	ENSUMAG00000016665	SF3A1	98	51.488	Ursus_maritimus
ENSCSAVG00000005608	-	92	61.864	ENSVVUG00000003075	SF3A1	96	51.484	Vulpes_vulpes
ENSCSAVG00000005608	-	93	66.667	ENSXETG00000016144	sf3a1	90	68.103	Xenopus_tropicalis
ENSCSAVG00000005608	-	100	50.641	ENSXCOG00000015653	sf3a1	93	63.158	Xiphophorus_couchianus
ENSCSAVG00000005608	-	100	50.769	ENSXMAG00000002753	sf3a1	93	63.158	Xiphophorus_maculatus