EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000005712 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 6970 bases
Position: chrreftig_22:854588-861557
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000009735	Wyosine_form	PF08608.12	1.7e-25	1	1
ENSCSAVP00000009736	Wyosine_form	PF08608.12	2e-25	1	1
ENSCSAVP00000009734	Wyosine_form	PF08608.12	2.8e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000009852	-	2057	-	ENSCSAVP00000009734	657 (aa)	-	H2YWM3
ENSCSAVT00000009853	-	1821	-	ENSCSAVP00000009735	582 (aa)	-	H2YWM4
ENSCSAVT00000009854	-	1903	-	ENSCSAVP00000009736	605 (aa)	-	H2YWM5
ENSCSAVT00000009855	-	547	-	ENSCSAVP00000009737	154 (aa)	-	H2YWM6

Gene Model

Click here to download ENSCSAVG00000005712's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000005712's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000005712	-	100	51.471	ENSG00000277149	TYW1B	90	51.320	Homo_sapiens
ENSCSAVG00000005712	-	100	55.199	ENSG00000198874	TYW1	75	70.513	Homo_sapiens
ENSCSAVG00000005712	-	100	55.732	ENSAPOG00000014391	tyw1	92	54.911	Acanthochromis_polyacanthus
ENSCSAVG00000005712	-	99	55.832	ENSACIG00000007325	tyw1	89	55.039	Amphilophus_citrinellus
ENSCSAVG00000005712	-	100	55.425	ENSAOCG00000016792	tyw1	54	67.067	Amphiprion_ocellaris
ENSCSAVG00000005712	-	100	55.279	ENSAPEG00000015939	tyw1	81	70.106	Amphiprion_percula
ENSCSAVG00000005712	-	100	55.352	ENSANAG00000037051	-	60	71.375	Aotus_nancymaae
ENSCSAVG00000005712	-	100	55.251	ENSACLG00000018688	tyw1	88	54.136	Astatotilapia_calliptera
ENSCSAVG00000005712	-	100	55.162	ENSAMXG00000004157	tyw1	93	55.000	Astyanax_mexicanus
ENSCSAVG00000005712	-	100	55.896	ENSBTAG00000008446	TYW1	89	55.572	Bos_taurus
ENSCSAVG00000005712	-	100	54.977	ENSCJAG00000004295	-	75	69.744	Callithrix_jacchus
ENSCSAVG00000005712	-	100	56.025	ENSCAFG00000010867	-	87	55.975	Canis_familiaris
ENSCSAVG00000005712	-	99	50.676	ENSCAFG00020005367	-	92	48.906	Canis_lupus_dingo
ENSCSAVG00000005712	-	100	56.641	ENSCHIG00000019510	-	88	55.436	Capra_hircus
ENSCSAVG00000005712	-	90	55.518	ENSTSYG00000008236	-	73	73.734	Carlito_syrichta
ENSCSAVG00000005712	-	100	54.409	ENSCAPG00000013569	-	97	53.388	Cavia_aperea
ENSCSAVG00000005712	-	100	55.068	ENSCPOG00000011182	-	75	70.513	Cavia_porcellus
ENSCSAVG00000005712	-	100	55.420	ENSCCAG00000026643	-	73	70.976	Cebus_capucinus
ENSCSAVG00000005712	-	100	54.893	ENSCATG00000043677	-	75	70.000	Cercocebus_atys
ENSCSAVG00000005712	-	100	55.099	ENSCLAG00000006321	-	89	55.456	Chinchilla_lanigera
ENSCSAVG00000005712	-	91	50.692	ENSCSAG00000018274	-	69	70.000	Chlorocebus_sabaeus
ENSCSAVG00000005712	-	100	56.863	ENSCPBG00000014896	-	84	56.863	Chrysemys_picta_bellii
ENSCSAVG00000005712	-	92	72.401	ENSCING00000004125	-	97	72.679	Ciona_intestinalis
ENSCSAVG00000005712	-	100	55.199	ENSCANG00000033209	-	75	70.000	Colobus_angolensis_palliatus
ENSCSAVG00000005712	-	67	65.485	ENSCGRG00001003679	Tyw1	69	67.153	Cricetulus_griseus_chok1gshd
ENSCSAVG00000005712	-	100	56.636	ENSCSEG00000005810	tyw1	72	70.557	Cynoglossus_semilaevis
ENSCSAVG00000005712	-	90	55.150	ENSCVAG00000001054	tyw1	69	73.750	Cyprinodon_variegatus
ENSCSAVG00000005712	-	100	56.355	ENSDARG00000062987	tyw1	79	52.443	Danio_rerio
ENSCSAVG00000005712	-	100	55.607	ENSDNOG00000024165	-	89	54.723	Dasypus_novemcinctus
ENSCSAVG00000005712	-	98	51.993	ENSDORG00000014772	Tyw1	88	52.211	Dipodomys_ordii
ENSCSAVG00000005712	-	69	61.927	ENSEBUG00000004494	tyw1	71	62.679	Eptatretus_burgeri
ENSCSAVG00000005712	-	100	54.908	ENSEASG00005008818	-	83	51.864	Equus_asinus_asinus
ENSCSAVG00000005712	-	89	70.255	ENSECAG00000023164	-	87	70.255	Equus_caballus
ENSCSAVG00000005712	-	100	54.403	ENSELUG00000008449	tyw1	81	69.496	Esox_lucius
ENSCSAVG00000005712	-	100	57.656	ENSFCAG00000014262	-	87	56.761	Felis_catus
ENSCSAVG00000005712	-	100	54.121	ENSFALG00000013810	-	89	54.123	Ficedula_albicollis
ENSCSAVG00000005712	-	100	55.708	ENSFDAG00000013270	-	89	55.208	Fukomys_damarensis
ENSCSAVG00000005712	-	97	49.438	ENSFHEG00000020824	tyw1	79	53.167	Fundulus_heteroclitus
ENSCSAVG00000005712	-	99	55.572	ENSGALG00000001110	-	82	52.280	Gallus_gallus
ENSCSAVG00000005712	-	100	54.407	ENSGACG00000012692	tyw1	91	53.304	Gasterosteus_aculeatus
ENSCSAVG00000005712	-	100	56.863	ENSGAGG00000022393	-	89	54.410	Gopherus_agassizii
ENSCSAVG00000005712	-	90	46.531	ENSGGOG00000001473	TYW1	73	55.096	Gorilla_gorilla
ENSCSAVG00000005712	-	100	55.251	ENSHBUG00000002640	tyw1	88	54.282	Haplochromis_burtoni
ENSCSAVG00000005712	-	95	58.632	ENSHGLG00000012093	-	85	70.079	Heterocephalus_glaber_female
ENSCSAVG00000005712	-	100	54.186	ENSHGLG00100011743	TYW1	74	70.079	Heterocephalus_glaber_male
ENSCSAVG00000005712	-	99	55.337	ENSHCOG00000019949	tyw1	78	68.090	Hippocampus_comes
ENSCSAVG00000005712	-	100	57.209	ENSIPUG00000016330	tyw1	79	53.871	Ictalurus_punctatus
ENSCSAVG00000005712	-	100	54.769	ENSSTOG00000004067	-	82	54.723	Ictidomys_tridecemlineatus
ENSCSAVG00000005712	-	100	55.130	ENSJJAG00000022959	Tyw1	70	68.827	Jaculus_jaculus
ENSCSAVG00000005712	-	100	55.810	ENSKMAG00000018599	tyw1	51	70.077	Kryptolebias_marmoratus
ENSCSAVG00000005712	-	100	52.879	ENSLACG00000018917	tyw1	73	65.649	Latimeria_chalumnae
ENSCSAVG00000005712	-	100	56.575	ENSLOCG00000004035	tyw1	87	55.848	Lepisosteus_oculatus
ENSCSAVG00000005712	-	100	55.046	ENSMFAG00000035457	-	75	70.000	Macaca_fascicularis
ENSCSAVG00000005712	-	100	55.046	ENSMMUG00000030374	-	75	70.000	Macaca_mulatta
ENSCSAVG00000005712	-	100	55.046	ENSMNEG00000041992	-	75	70.000	Macaca_nemestrina
ENSCSAVG00000005712	-	100	55.046	ENSMLEG00000039741	-	75	70.000	Mandrillus_leucophaeus
ENSCSAVG00000005712	-	100	55.030	ENSMAMG00000016089	tyw1	76	70.027	Mastacembelus_armatus
ENSCSAVG00000005712	-	100	55.919	ENSMZEG00005024386	tyw1	94	54.588	Maylandia_zebra
ENSCSAVG00000005712	-	100	54.281	ENSMGAG00000002176	-	83	52.033	Meleagris_gallopavo
ENSCSAVG00000005712	-	100	55.146	ENSMAUG00000002959	Tyw1	90	54.829	Mesocricetus_auratus
ENSCSAVG00000005712	-	100	55.352	ENSMICG00000014374	-	92	52.998	Microcebus_murinus
ENSCSAVG00000005712	-	100	55.015	ENSMOCG00000017720	Tyw1	90	54.479	Microtus_ochrogaster
ENSCSAVG00000005712	-	98	55.139	ENSMMOG00000005064	tyw1	76	70.557	Mola_mola
ENSCSAVG00000005712	-	100	55.081	ENSMODG00000025697	-	75	68.922	Monodelphis_domestica
ENSCSAVG00000005712	-	100	55.111	ENSMALG00000010238	tyw1	74	69.054	Monopterus_albus
ENSCSAVG00000005712	-	100	54.615	MGP_CAROLIEiJ_G0027801	Tyw1	89	53.632	Mus_caroli
ENSCSAVG00000005712	-	100	54.923	ENSMUSG00000056310	Tyw1	89	54.308	Mus_musculus
ENSCSAVG00000005712	-	100	55.332	MGP_PahariEiJ_G0024383	Tyw1	91	54.370	Mus_pahari
ENSCSAVG00000005712	-	100	54.769	MGP_SPRETEiJ_G0028799	Tyw1	55	66.910	Mus_spretus
ENSCSAVG00000005712	-	100	57.323	ENSMPUG00000016191	-	93	55.690	Mustela_putorius_furo
ENSCSAVG00000005712	-	100	53.659	ENSMLUG00000013582	-	62	70.370	Myotis_lucifugus
ENSCSAVG00000005712	-	100	55.470	ENSNGAG00000002742	Tyw1	92	55.096	Nannospalax_galili
ENSCSAVG00000005712	-	100	56.661	ENSNBRG00000016996	tyw1	83	70.663	Neolamprologus_brichardi
ENSCSAVG00000005712	-	100	54.312	ENSNLEG00000013210	-	72	70.449	Nomascus_leucogenys
ENSCSAVG00000005712	-	90	51.451	ENSOPRG00000008734	-	74	50.126	Ochotona_princeps
ENSCSAVG00000005712	-	99	54.243	ENSODEG00000014729	-	89	52.581	Octodon_degus
ENSCSAVG00000005712	-	100	56.049	ENSONIG00000005872	tyw1	88	54.905	Oreochromis_niloticus
ENSCSAVG00000005712	-	100	55.965	ENSOCUG00000003173	-	76	70.000	Oryctolagus_cuniculus
ENSCSAVG00000005712	-	100	57.282	ENSORLG00000001393	tyw1	89	55.673	Oryzias_latipes
ENSCSAVG00000005712	-	100	57.581	ENSORLG00020019361	tyw1	87	57.282	Oryzias_latipes_hni
ENSCSAVG00000005712	-	100	55.672	ENSORLG00015008095	tyw1	80	63.706	Oryzias_latipes_hsok
ENSCSAVG00000005712	-	100	55.687	ENSOGAG00000016555	-	89	54.919	Otolemur_garnettii
ENSCSAVG00000005712	-	100	55.775	ENSOARG00000010673	-	88	55.471	Ovis_aries
ENSCSAVG00000005712	-	100	57.656	ENSPPRG00000004945	-	87	56.761	Panthera_pardus
ENSCSAVG00000005712	-	100	57.656	ENSPTIG00000019545	-	92	52.389	Panthera_tigris_altaica
ENSCSAVG00000005712	-	100	50.076	ENSPTRG00000023076	TYW1B	74	62.785	Pan_troglodytes
ENSCSAVG00000005712	-	100	54.893	ENSPANG00000019053	-	75	69.744	Papio_anubis
ENSCSAVG00000005712	-	100	55.988	ENSPKIG00000006545	tyw1	85	55.399	Paramormyrops_kingsleyae
ENSCSAVG00000005712	-	100	54.490	ENSPMGG00000004240	tyw1	86	49.919	Periophthalmus_magnuspinnatus
ENSCSAVG00000005712	-	100	54.711	ENSPEMG00000008274	Tyw1	90	53.891	Peromyscus_maniculatus_bairdii
ENSCSAVG00000005712	-	100	55.689	ENSPFOG00000015855	tyw1	80	51.400	Poecilia_formosa
ENSCSAVG00000005712	-	100	58.128	ENSPLAG00000000838	tyw1	85	68.766	Poecilia_latipinna
ENSCSAVG00000005712	-	100	56.101	ENSPMEG00000019437	tyw1	80	69.761	Poecilia_mexicana
ENSCSAVG00000005712	-	100	54.304	ENSPREG00000018773	tyw1	86	55.662	Poecilia_reticulata
ENSCSAVG00000005712	-	100	54.893	ENSPPYG00000017514	TYW1	73	71.240	Pongo_abelii
ENSCSAVG00000005712	-	87	48.674	ENSPCOG00000015294	-	82	49.112	Propithecus_coquereli
ENSCSAVG00000005712	-	100	55.251	ENSPNYG00000022381	tyw1	88	54.136	Pundamilia_nyererei
ENSCSAVG00000005712	-	100	55.692	ENSPNAG00000009001	tyw1	89	55.852	Pygocentrus_nattereri
ENSCSAVG00000005712	-	100	55.725	ENSRNOG00000024352	Tyw1	88	54.421	Rattus_norvegicus
ENSCSAVG00000005712	-	100	55.199	ENSRBIG00000039619	-	75	70.000	Rhinopithecus_bieti
ENSCSAVG00000005712	-	100	55.199	ENSRROG00000039780	-	75	70.000	Rhinopithecus_roxellana
ENSCSAVG00000005712	-	100	42.278	YPL207W	-	72	42.155	Saccharomyces_cerevisiae
ENSCSAVG00000005712	-	100	54.948	ENSSBOG00000025873	-	75	69.487	Saimiri_boliviensis_boliviensis
ENSCSAVG00000005712	-	100	56.406	ENSSHAG00000010346	-	90	55.639	Sarcophilus_harrisii
ENSCSAVG00000005712	-	100	56.942	ENSSFOG00015001054	tyw1	94	55.840	Scleropages_formosus
ENSCSAVG00000005712	-	100	56.549	ENSSMAG00000020514	tyw1	80	52.912	Scophthalmus_maximus
ENSCSAVG00000005712	-	100	55.778	ENSSDUG00000001552	tyw1	54	70.332	Seriola_dumerili
ENSCSAVG00000005712	-	100	55.051	ENSSLDG00000003554	tyw1	50	70.332	Seriola_lalandi_dorsalis
ENSCSAVG00000005712	-	100	55.416	ENSSPUG00000002715	-	87	55.911	Sphenodon_punctatus
ENSCSAVG00000005712	-	89	56.303	ENSTGUG00000003428	-	80	52.444	Taeniopygia_guttata
ENSCSAVG00000005712	-	100	54.726	ENSTRUG00000016107	tyw1	50	69.821	Takifugu_rubripes
ENSCSAVG00000005712	-	100	54.449	ENSTNIG00000018999	tyw1	60	67.397	Tetraodon_nigroviridis
ENSCSAVG00000005712	-	100	56.693	ENSUMAG00000015343	-	87	56.063	Ursus_maritimus
ENSCSAVG00000005712	-	100	56.577	ENSVVUG00000016457	-	87	55.591	Vulpes_vulpes
ENSCSAVG00000005712	-	100	57.209	ENSXETG00000010094	tyw1	89	54.896	Xenopus_tropicalis
ENSCSAVG00000005712	-	100	57.800	ENSXMAG00000013125	tyw1	95	56.956	Xiphophorus_maculatus