EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000005792 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 2583 bases
Position: chrreftig_88:495143-497725
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000009856	RVT_1	PF00078.27	1.5e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000009975	-	1224	-	ENSCSAVP00000009857	408 (aa)	-	H2YWZ6
ENSCSAVT00000009974	-	2556	-	ENSCSAVP00000009856	852 (aa)	-	H2YWZ5

Gene Model

Click here to download ENSCSAVG00000005792's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000005792's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000005792	-	60	78.252	ENSCSAVG00000002537	-	100	78.252

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000005792	-	78	34.900	ENSAMXG00000041658	-	81	35.007	Astyanax_mexicanus
ENSCSAVG00000005792	-	99	31.519	ENSIPUG00000019854	-	87	31.243	Ictalurus_punctatus
ENSCSAVG00000005792	-	72	37.143	ENSLACG00000004055	-	86	36.725	Latimeria_chalumnae
ENSCSAVG00000005792	-	95	32.096	ENSLACG00000014846	-	86	31.851	Latimeria_chalumnae
ENSCSAVG00000005792	-	94	37.705	ENSLOCG00000010271	-	99	37.500	Lepisosteus_oculatus
ENSCSAVG00000005792	-	92	38.861	ENSLOCG00000016057	-	91	38.714	Lepisosteus_oculatus
ENSCSAVG00000005792	-	51	30.543	ENSORLG00015007384	-	76	30.155	Oryzias_latipes_hsok