EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000005896 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 4915 bases
Position: chrreftig_96:333732-338646
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000010001	zf-C2H2	PF00096.26	5.4e-48	1	9
ENSCSAVP00000010001	zf-C2H2	PF00096.26	5.4e-48	2	9
ENSCSAVP00000010001	zf-C2H2	PF00096.26	5.4e-48	3	9
ENSCSAVP00000010001	zf-C2H2	PF00096.26	5.4e-48	4	9
ENSCSAVP00000010001	zf-C2H2	PF00096.26	5.4e-48	5	9
ENSCSAVP00000010001	zf-C2H2	PF00096.26	5.4e-48	6	9
ENSCSAVP00000010001	zf-C2H2	PF00096.26	5.4e-48	7	9
ENSCSAVP00000010001	zf-C2H2	PF00096.26	5.4e-48	8	9
ENSCSAVP00000010001	zf-C2H2	PF00096.26	5.4e-48	9	9
ENSCSAVP00000010001	zf-met	PF12874.7	2.1e-15	1	2
ENSCSAVP00000010001	zf-met	PF12874.7	2.1e-15	2	2
ENSCSAVP00000010001	zf-C2H2_jaz	PF12171.8	1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000010123	-	1669	-	ENSCSAVP00000010001	545 (aa)	-	H2YXE0

Gene Model

Click here to download ENSCSAVG00000005896's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000005896's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000005896	-	63	32.990	ENSCSAVG00000009421	-	51	32.990
ENSCSAVG00000005896	-	72	38.298	ENSCSAVG00000006608	-	99	38.298
ENSCSAVG00000005896	-	72	40.000	ENSCSAVG00000004703	-	100	34.302
ENSCSAVG00000005896	-	68	37.895	ENSCSAVG00000000293	-	100	36.937
ENSCSAVG00000005896	-	68	36.667	ENSCSAVG00000004762	-	100	36.667
ENSCSAVG00000005896	-	68	44.565	ENSCSAVG00000000690	-	96	44.565
ENSCSAVG00000005896	-	68	33.478	ENSCSAVG00000000520	-	100	33.478
ENSCSAVG00000005896	-	68	39.623	ENSCSAVG00000001830	-	100	39.623
ENSCSAVG00000005896	-	68	37.079	ENSCSAVG00000001834	-	99	37.079
ENSCSAVG00000005896	-	69	32.979	ENSCSAVG00000009953	-	99	32.979
ENSCSAVG00000005896	-	69	36.090	ENSCSAVG00000009739	-	58	36.090
ENSCSAVG00000005896	-	77	36.752	ENSCSAVG00000006141	-	100	34.031
ENSCSAVG00000005896	-	71	37.273	ENSCSAVG00000010156	-	91	37.273
ENSCSAVG00000005896	-	65	43.210	ENSCSAVG00000000655	-	98	43.210
ENSCSAVG00000005896	-	68	36.792	ENSCSAVG00000000673	-	99	36.792
ENSCSAVG00000005896	-	68	39.640	ENSCSAVG00000008862	-	99	42.857
ENSCSAVG00000005896	-	68	38.182	ENSCSAVG00000003895	-	100	38.182
ENSCSAVG00000005896	-	68	45.333	ENSCSAVG00000001949	-	98	45.333
ENSCSAVG00000005896	-	69	32.313	ENSCSAVG00000002179	-	100	31.975
ENSCSAVG00000005896	-	75	33.010	ENSCSAVG00000006650	-	99	38.462
ENSCSAVG00000005896	-	100	31.515	ENSCSAVG00000006745	-	99	31.515
ENSCSAVG00000005896	-	69	39.535	ENSCSAVG00000004499	-	100	35.849
ENSCSAVG00000005896	-	74	35.870	ENSCSAVG00000007918	-	100	35.870
ENSCSAVG00000005896	-	79	33.756	ENSCSAVG00000001989	-	99	35.200
ENSCSAVG00000005896	-	70	32.540	ENSCSAVG00000007589	-	100	32.540
ENSCSAVG00000005896	-	67	34.545	ENSCSAVG00000011749	-	80	34.545
ENSCSAVG00000005896	-	68	41.772	ENSCSAVG00000004543	-	99	34.247
ENSCSAVG00000005896	-	53	34.314	ENSCSAVG00000006028	-	57	34.314
ENSCSAVG00000005896	-	71	40.506	ENSCSAVG00000011146	-	90	40.506
ENSCSAVG00000005896	-	68	32.308	ENSCSAVG00000001808	-	99	32.308
ENSCSAVG00000005896	-	72	37.652	ENSCSAVG00000009574	-	99	35.206
ENSCSAVG00000005896	-	69	30.682	ENSCSAVG00000009217	-	99	30.682
ENSCSAVG00000005896	-	75	37.313	ENSCSAVG00000004678	-	99	32.628
ENSCSAVG00000005896	-	70	34.450	ENSCSAVG00000009583	-	100	34.450
ENSCSAVG00000005896	-	72	31.421	ENSCSAVG00000010960	-	99	35.260
ENSCSAVG00000005896	-	90	33.746	ENSCSAVG00000000642	-	99	39.474
ENSCSAVG00000005896	-	68	32.700	ENSCSAVG00000000649	-	99	32.267
ENSCSAVG00000005896	-	100	67.942	ENSCSAVG00000006729	-	100	68.488
ENSCSAVG00000005896	-	68	35.659	ENSCSAVG00000005904	-	98	35.659
ENSCSAVG00000005896	-	69	35.338	ENSCSAVG00000009819	-	75	35.338

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000005896	-	74	32.000	ENSACIG00000017166	-	74	32.000	Amphilophus_citrinellus
ENSCSAVG00000005896	-	70	34.000	ENSAOCG00000018579	-	81	34.000	Amphiprion_ocellaris
ENSCSAVG00000005896	-	74	39.640	ENSAPEG00000007889	-	81	39.640	Amphiprion_percula
ENSCSAVG00000005896	-	68	37.069	ENSAPEG00000019755	-	88	31.285	Amphiprion_percula
ENSCSAVG00000005896	-	70	31.551	ENSAMXG00000032845	-	56	31.551	Astyanax_mexicanus
ENSCSAVG00000005896	-	69	30.719	WBGene00021374	Y37E11B.1	90	30.921	Caenorhabditis_elegans
ENSCSAVG00000005896	-	68	32.857	ENSCING00000005713	-	71	32.857	Ciona_intestinalis
ENSCSAVG00000005896	-	69	32.857	ENSCING00000000529	zf(btb/c2h2)	54	32.857	Ciona_intestinalis
ENSCSAVG00000005896	-	100	71.455	ENSCING00000004861	zf(c2h2)-12	100	71.455	Ciona_intestinalis
ENSCSAVG00000005896	-	80	32.367	ENSCSEG00000005491	-	92	32.367	Cynoglossus_semilaevis
ENSCSAVG00000005896	-	76	33.333	ENSCVAG00000016098	-	96	33.333	Cyprinodon_variegatus
ENSCSAVG00000005896	-	72	38.532	ENSCVAG00000002295	-	78	38.532	Cyprinodon_variegatus
ENSCSAVG00000005896	-	66	34.286	FBgn0033934	CG17385	60	34.286	Drosophila_melanogaster
ENSCSAVG00000005896	-	68	40.506	FBgn0028895	CG17328	54	40.506	Drosophila_melanogaster
ENSCSAVG00000005896	-	70	36.243	ENSEBUG00000000735	-	98	36.243	Eptatretus_burgeri
ENSCSAVG00000005896	-	74	34.392	ENSEBUG00000008392	-	75	35.185	Eptatretus_burgeri
ENSCSAVG00000005896	-	70	34.409	ENSEBUG00000015522	-	85	33.419	Eptatretus_burgeri
ENSCSAVG00000005896	-	91	32.840	ENSEBUG00000004841	-	95	33.871	Eptatretus_burgeri
ENSCSAVG00000005896	-	68	31.186	ENSELUG00000020794	-	64	31.186	Esox_lucius
ENSCSAVG00000005896	-	68	32.500	ENSFHEG00000007344	-	55	32.500	Fundulus_heteroclitus
ENSCSAVG00000005896	-	71	31.111	ENSFHEG00000020889	-	76	31.111	Fundulus_heteroclitus
ENSCSAVG00000005896	-	75	32.390	ENSFHEG00000013644	-	77	34.483	Fundulus_heteroclitus
ENSCSAVG00000005896	-	74	31.973	ENSFHEG00000003596	-	75	31.973	Fundulus_heteroclitus
ENSCSAVG00000005896	-	72	32.381	ENSFHEG00000012990	-	95	32.381	Fundulus_heteroclitus
ENSCSAVG00000005896	-	69	34.884	ENSGACG00000018415	-	99	34.884	Gasterosteus_aculeatus
ENSCSAVG00000005896	-	71	31.915	ENSHCOG00000017437	-	83	37.273	Hippocampus_comes
ENSCSAVG00000005896	-	68	33.333	ENSHCOG00000001313	-	60	32.432	Hippocampus_comes
ENSCSAVG00000005896	-	70	31.858	ENSHCOG00000008181	-	71	31.858	Hippocampus_comes
ENSCSAVG00000005896	-	74	32.222	ENSHCOG00000014881	-	73	32.222	Hippocampus_comes
ENSCSAVG00000005896	-	72	38.554	ENSHCOG00000014887	-	76	38.554	Hippocampus_comes
ENSCSAVG00000005896	-	75	34.862	ENSKMAG00000007658	-	84	35.652	Kryptolebias_marmoratus
ENSCSAVG00000005896	-	68	34.104	ENSKMAG00000011202	-	63	34.104	Kryptolebias_marmoratus
ENSCSAVG00000005896	-	78	33.043	ENSKMAG00000012909	-	87	30.100	Kryptolebias_marmoratus
ENSCSAVG00000005896	-	74	33.582	ENSLBEG00000026573	-	66	33.582	Labrus_bergylta
ENSCSAVG00000005896	-	79	34.091	ENSONIG00000003224	-	95	34.091	Oreochromis_niloticus
ENSCSAVG00000005896	-	70	32.857	ENSONIG00000003471	-	100	32.461	Oreochromis_niloticus
ENSCSAVG00000005896	-	72	35.294	ENSONIG00000009894	-	97	35.294	Oreochromis_niloticus
ENSCSAVG00000005896	-	71	34.211	ENSONIG00000016416	-	98	30.446	Oreochromis_niloticus
ENSCSAVG00000005896	-	68	45.455	ENSONIG00000007812	-	99	37.572	Oreochromis_niloticus
ENSCSAVG00000005896	-	74	32.432	ENSOMEG00000017673	-	83	32.432	Oryzias_melastigma
ENSCSAVG00000005896	-	69	30.631	ENSPMGG00000012289	-	71	30.631	Periophthalmus_magnuspinnatus
ENSCSAVG00000005896	-	69	33.333	ENSPMGG00000019842	-	73	33.333	Periophthalmus_magnuspinnatus
ENSCSAVG00000005896	-	78	39.091	ENSPMGG00000000458	-	100	39.091	Periophthalmus_magnuspinnatus
ENSCSAVG00000005896	-	74	33.083	ENSPMGG00000000489	-	94	33.083	Periophthalmus_magnuspinnatus
ENSCSAVG00000005896	-	77	35.043	ENSPMGG00000000243	-	86	33.498	Periophthalmus_magnuspinnatus
ENSCSAVG00000005896	-	79	32.500	ENSPMGG00000022524	-	94	32.278	Periophthalmus_magnuspinnatus
ENSCSAVG00000005896	-	63	32.331	ENSPMGG00000000218	-	61	32.886	Periophthalmus_magnuspinnatus
ENSCSAVG00000005896	-	69	34.637	ENSPMAG00000007983	-	99	34.637	Petromyzon_marinus
ENSCSAVG00000005896	-	70	35.795	ENSPFOG00000002879	-	99	34.465	Poecilia_formosa
ENSCSAVG00000005896	-	70	34.066	ENSPFOG00000020691	-	89	34.518	Poecilia_formosa
ENSCSAVG00000005896	-	69	32.402	ENSPLAG00000011254	-	61	32.402	Poecilia_latipinna
ENSCSAVG00000005896	-	75	33.512	ENSPLAG00000006174	-	91	31.412	Poecilia_latipinna
ENSCSAVG00000005896	-	88	32.338	ENSPMEG00000021927	-	68	32.338	Poecilia_mexicana
ENSCSAVG00000005896	-	76	31.973	ENSPMEG00000019229	-	68	31.973	Poecilia_mexicana
ENSCSAVG00000005896	-	68	36.986	ENSPMEG00000022676	-	99	36.986	Poecilia_mexicana
ENSCSAVG00000005896	-	71	32.402	ENSPMEG00000007503	-	70	32.402	Poecilia_mexicana
ENSCSAVG00000005896	-	86	31.944	ENSPREG00000016204	-	79	31.944	Poecilia_reticulata
ENSCSAVG00000005896	-	70	31.624	ENSPREG00000007146	-	68	31.624	Poecilia_reticulata
ENSCSAVG00000005896	-	62	34.074	ENSPREG00000015352	-	65	34.074	Poecilia_reticulata
ENSCSAVG00000005896	-	77	30.159	ENSSMAG00000000404	-	69	30.159	Scophthalmus_maximus
ENSCSAVG00000005896	-	77	35.811	ENSSDUG00000000946	-	97	36.697	Seriola_dumerili
ENSCSAVG00000005896	-	68	34.940	ENSSDUG00000000871	-	94	34.940	Seriola_dumerili
ENSCSAVG00000005896	-	70	33.913	ENSSLDG00000000464	-	61	33.913	Seriola_lalandi_dorsalis
ENSCSAVG00000005896	-	72	34.375	ENSSLDG00000002515	-	78	37.209	Seriola_lalandi_dorsalis
ENSCSAVG00000005896	-	68	35.057	ENSSPAG00000009405	-	52	35.057	Stegastes_partitus
ENSCSAVG00000005896	-	70	37.383	ENSXCOG00000005697	-	99	38.750	Xiphophorus_couchianus
ENSCSAVG00000005896	-	70	32.402	ENSXMAG00000022242	-	84	32.402	Xiphophorus_maculatus