EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000005900 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 11138 bases
Position: chrreftig_54:400528-411665
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000010006	ResIII	PF04851.15	2e-09	1	1
ENSCSAVP00000010007	ResIII	PF04851.15	4.9e-07	1	1
ENSCSAVP00000010005	ResIII	PF04851.15	4.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000010127	-	2502	-	ENSCSAVP00000010005	739 (aa)	-	H2YXE4
ENSCSAVT00000010128	-	1509	-	ENSCSAVP00000010006	503 (aa)	-	H2YXE5
ENSCSAVT00000010129	-	861	-	ENSCSAVP00000010007	287 (aa)	-	H2YXE6

Gene Model

Click here to download ENSCSAVG00000005900's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000005900's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000005900	-	100	33.119	ENSCSAVG00000007580	-	60	41.051
ENSCSAVG00000005900	-	77	41.476	ENSCSAVG00000004620	-	66	41.833
ENSCSAVG00000005900	-	67	30.095	ENSCSAVG00000010859	-	66	30.095
ENSCSAVG00000005900	-	50	37.662	ENSCSAVG00000010291	-	79	30.544
ENSCSAVG00000005900	-	93	43.002	ENSCSAVG00000004448	-	64	41.214
ENSCSAVG00000005900	-	75	37.300	ENSCSAVG00000007529	-	78	40.159

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000005900	-	100	64.832	ENSG00000100888	CHD8	86	67.778	Homo_sapiens
ENSCSAVG00000005900	-	100	64.832	ENSCAFG00020014565	CHD8	58	64.832	Canis_lupus_dingo
ENSCSAVG00000005900	-	99	60.835	ENSCVAG00000020866	-	96	60.835	Cyprinodon_variegatus
ENSCSAVG00000005900	-	98	62.651	ENSDORG00000026018	-	91	62.651	Dipodomys_ordii
ENSCSAVG00000005900	-	97	54.286	ENSFHEG00000009582	-	63	52.431	Fundulus_heteroclitus
ENSCSAVG00000005900	-	96	61.963	ENSFHEG00000017596	-	90	61.963	Fundulus_heteroclitus
ENSCSAVG00000005900	-	97	63.380	ENSGALG00000036191	-	93	63.380	Gallus_gallus
ENSCSAVG00000005900	-	74	56.465	ENSGAFG00000015210	-	96	50.722	Gambusia_affinis
ENSCSAVG00000005900	-	98	61.368	ENSHCOG00000012108	-	88	61.368	Hippocampus_comes
ENSCSAVG00000005900	-	98	62.651	ENSJJAG00000010052	-	91	62.651	Jaculus_jaculus
ENSCSAVG00000005900	-	98	62.450	ENSNGAG00000017135	-	91	62.450	Nannospalax_galili
ENSCSAVG00000005900	-	98	62.851	ENSODEG00000015358	-	91	62.851	Octodon_degus
ENSCSAVG00000005900	-	65	68.072	ENSOANG00000013276	-	100	68.072	Ornithorhynchus_anatinus
ENSCSAVG00000005900	-	87	58.369	ENSPMGG00000019850	chd8	81	63.465	Periophthalmus_magnuspinnatus
ENSCSAVG00000005900	-	100	61.614	ENSPMEG00000000676	-	84	61.614	Poecilia_mexicana
ENSCSAVG00000005900	-	100	62.450	ENSPREG00000014744	chd7	95	55.078	Poecilia_reticulata
ENSCSAVG00000005900	-	52	57.718	ENSSMAG00000001097	-	97	58.605	Scophthalmus_maximus
ENSCSAVG00000005900	-	100	62.983	ENSTRUG00000006682	chd8	89	62.828	Takifugu_rubripes
ENSCSAVG00000005900	-	100	60.236	ENSTRUG00000007574	-	57	60.236	Takifugu_rubripes
ENSCSAVG00000005900	-	100	64.832	ENSUAMG00000004198	CHD8	73	64.832	Ursus_americanus
ENSCSAVG00000005900	-	99	64.143	ENSXETG00000017194	CHD8	59	72.202	Xenopus_tropicalis