EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000005904 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 2514 bases
Position: chrreftig_19:265659-268172
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000010012	zf-C2H2	PF00096.26	8.8e-27	1	4
ENSCSAVP00000010012	zf-C2H2	PF00096.26	8.8e-27	2	4
ENSCSAVP00000010012	zf-C2H2	PF00096.26	8.8e-27	3	4
ENSCSAVP00000010012	zf-C2H2	PF00096.26	8.8e-27	4	4
ENSCSAVP00000010012	zf-met	PF12874.7	5e-10	1	2
ENSCSAVP00000010012	zf-met	PF12874.7	5e-10	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000010134	-	486	-	ENSCSAVP00000010012	162 (aa)	-	H2YXF1

Gene Model

Click here to download ENSCSAVG00000005904's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000005904's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000005904	-	100	33.628	ENSCSAVG00000006729	-	69	33.628
ENSCSAVG00000005904	-	97	41.441	ENSCSAVG00000009583	-	99	41.441
ENSCSAVG00000005904	-	100	36.429	ENSCSAVG00000006745	-	98	36.429
ENSCSAVG00000005904	-	99	43.137	ENSCSAVG00000006028	-	51	43.137
ENSCSAVG00000005904	-	100	37.975	ENSCSAVG00000009819	-	73	37.975
ENSCSAVG00000005904	-	100	42.857	ENSCSAVG00000010960	-	99	42.857
ENSCSAVG00000005904	-	100	40.876	ENSCSAVG00000000520	-	100	40.876
ENSCSAVG00000005904	-	100	43.312	ENSCSAVG00000008862	-	99	43.312
ENSCSAVG00000005904	-	97	41.558	ENSCSAVG00000000649	-	99	41.558
ENSCSAVG00000005904	-	100	40.945	ENSCSAVG00000009739	-	57	40.945
ENSCSAVG00000005904	-	99	43.860	ENSCSAVG00000004543	-	99	38.168
ENSCSAVG00000005904	-	96	42.581	ENSCSAVG00000007918	-	100	42.581
ENSCSAVG00000005904	-	96	45.161	ENSCSAVG00000000293	-	100	45.161
ENSCSAVG00000005904	-	100	44.853	ENSCSAVG00000001989	-	100	44.853
ENSCSAVG00000005904	-	100	45.977	ENSCSAVG00000006608	-	99	47.692
ENSCSAVG00000005904	-	96	44.444	ENSCSAVG00000009953	-	95	44.444
ENSCSAVG00000005904	-	97	41.905	ENSCSAVG00000004678	-	99	41.905
ENSCSAVG00000005904	-	100	45.185	ENSCSAVG00000001834	-	100	45.185
ENSCSAVG00000005904	-	97	44.737	ENSCSAVG00000001830	-	99	44.737
ENSCSAVG00000005904	-	96	40.741	ENSCSAVG00000004762	-	100	40.741
ENSCSAVG00000005904	-	98	35.659	ENSCSAVG00000005896	-	68	35.659
ENSCSAVG00000005904	-	100	45.902	ENSCSAVG00000004703	-	99	45.902
ENSCSAVG00000005904	-	83	35.000	ENSCSAVG00000006755	-	72	35.000
ENSCSAVG00000005904	-	97	43.636	ENSCSAVG00000000655	-	100	43.636
ENSCSAVG00000005904	-	97	47.619	ENSCSAVG00000004499	-	100	47.619
ENSCSAVG00000005904	-	96	41.912	ENSCSAVG00000000642	-	100	40.650
ENSCSAVG00000005904	-	96	42.963	ENSCSAVG00000000673	-	100	42.963
ENSCSAVG00000005904	-	54	33.333	ENSCSAVG00000003690	-	99	33.333
ENSCSAVG00000005904	-	100	39.744	ENSCSAVG00000009574	-	99	39.744
ENSCSAVG00000005904	-	96	43.103	ENSCSAVG00000002179	-	100	43.103
ENSCSAVG00000005904	-	97	47.368	ENSCSAVG00000006650	-	99	47.368
ENSCSAVG00000005904	-	95	38.318	ENSCSAVG00000011749	-	78	38.318
ENSCSAVG00000005904	-	96	40.964	ENSCSAVG00000001808	-	100	40.964
ENSCSAVG00000005904	-	100	43.548	ENSCSAVG00000000690	-	99	44.444
ENSCSAVG00000005904	-	95	44.211	ENSCSAVG00000003895	-	100	44.211
ENSCSAVG00000005904	-	100	46.104	ENSCSAVG00000006141	-	100	46.104
ENSCSAVG00000005904	-	100	35.948	ENSCSAVG00000009217	-	99	35.948
ENSCSAVG00000005904	-	100	42.593	ENSCSAVG00000010156	-	92	42.593
ENSCSAVG00000005904	-	83	49.412	ENSCSAVG00000011146	-	60	49.412
ENSCSAVG00000005904	-	100	42.647	ENSCSAVG00000007589	-	100	42.647
ENSCSAVG00000005904	-	87	53.086	ENSCSAVG00000001949	-	99	53.086

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000005904	-	100	77.160	ENSAMEG00000013858	-	92	77.160	Ailuropoda_melanoleuca
ENSCSAVG00000005904	-	88	63.380	ENSACIG00000002180	-	97	63.380	Amphilophus_citrinellus
ENSCSAVG00000005904	-	100	77.160	ENSAPLG00000015700	GFI1	50	77.160	Anas_platyrhynchos
ENSCSAVG00000005904	-	68	75.455	ENSACLG00000001258	-	89	75.455	Astatotilapia_calliptera
ENSCSAVG00000005904	-	100	76.543	ENSAMXG00000006669	GFI1	52	76.543	Astyanax_mexicanus
ENSCSAVG00000005904	-	70	81.579	ENSCAPG00000016268	-	100	81.579	Cavia_aperea
ENSCSAVG00000005904	-	83	78.519	ENSCPBG00000015742	-	100	78.519	Chrysemys_picta_bellii
ENSCSAVG00000005904	-	99	92.547	ENSCING00000011342	-	85	92.547	Ciona_intestinalis
ENSCSAVG00000005904	-	83	79.259	ENSCGRG00000013485	-	100	79.259	Cricetulus_griseus_crigri
ENSCSAVG00000005904	-	83	79.259	ENSDORG00000023443	-	100	79.259	Dipodomys_ordii
ENSCSAVG00000005904	-	100	74.074	ENSEBUG00000008075	gfi1ab	56	74.074	Eptatretus_burgeri
ENSCSAVG00000005904	-	83	79.259	ENSFDAG00000019296	-	100	79.259	Fukomys_damarensis
ENSCSAVG00000005904	-	83	78.519	ENSGAGG00000015899	GFI1	100	78.519	Gopherus_agassizii
ENSCSAVG00000005904	-	100	77.778	ENSHCOG00000019555	GFI1	50	77.778	Hippocampus_comes
ENSCSAVG00000005904	-	97	58.125	ENSIPUG00000021407	-	52	58.125	Ictalurus_punctatus
ENSCSAVG00000005904	-	70	81.579	ENSJJAG00000022622	-	100	81.579	Jaculus_jaculus
ENSCSAVG00000005904	-	100	71.515	ENSLACG00000017590	-	52	71.515	Latimeria_chalumnae
ENSCSAVG00000005904	-	83	79.259	ENSMMUG00000005068	GFI1	100	79.259	Macaca_mulatta
ENSCSAVG00000005904	-	83	79.259	ENSMAUG00000021273	-	100	79.259	Mesocricetus_auratus
ENSCSAVG00000005904	-	83	79.259	ENSMOCG00000004478	-	100	79.259	Microtus_ochrogaster
ENSCSAVG00000005904	-	100	79.012	ENSMMOG00000005556	gfi1ab	51	79.012	Mola_mola
ENSCSAVG00000005904	-	100	77.160	MGP_CAROLIEiJ_G0027508	Gfi1	100	79.259	Mus_caroli
ENSCSAVG00000005904	-	100	77.160	MGP_PahariEiJ_G0017280	Gfi1	100	79.259	Mus_pahari
ENSCSAVG00000005904	-	83	79.259	ENSNGAG00000002549	-	100	79.259	Nannospalax_galili
ENSCSAVG00000005904	-	68	74.545	ENSNBRG00000010351	-	85	74.545	Neolamprologus_brichardi
ENSCSAVG00000005904	-	70	75.221	ENSNBRG00000001834	-	89	75.221	Neolamprologus_brichardi
ENSCSAVG00000005904	-	83	79.259	ENSODEG00000006410	-	100	79.259	Octodon_degus
ENSCSAVG00000005904	-	97	77.707	ENSOANG00000022289	-	83	77.707	Ornithorhynchus_anatinus
ENSCSAVG00000005904	-	72	79.487	ENSPTIG00000002680	-	87	79.487	Panthera_tigris_altaica
ENSCSAVG00000005904	-	100	76.543	ENSPMGG00000011041	GFI1	51	76.543	Periophthalmus_magnuspinnatus
ENSCSAVG00000005904	-	100	78.395	ENSPLAG00000010879	gfi1ab	55	78.395	Poecilia_latipinna
ENSCSAVG00000005904	-	99	77.500	ENSPREG00000007997	GFI1	51	77.500	Poecilia_reticulata
ENSCSAVG00000005904	-	68	75.455	ENSPNYG00000001775	-	86	75.455	Pundamilia_nyererei
ENSCSAVG00000005904	-	99	58.750	ENSPNAG00000014299	-	51	58.750	Pygocentrus_nattereri
ENSCSAVG00000005904	-	80	69.466	ENSSLDG00000017614	-	95	69.466	Seriola_lalandi_dorsalis
ENSCSAVG00000005904	-	100	78.395	ENSSPAG00000009140	gfi1ab	58	78.395	Stegastes_partitus
ENSCSAVG00000005904	-	100	77.160	ENSTGUG00000006060	GFI1	53	77.160	Taeniopygia_guttata
ENSCSAVG00000005904	-	83	79.259	ENSUMAG00000011251	-	100	79.259	Ursus_maritimus
ENSCSAVG00000005904	-	87	82.883	ENSXCOG00000009186	-	89	82.883	Xiphophorus_couchianus