EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000006042 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 3187 bases
Position: chrreftig_324:34182-37368
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000010252	MMR_HSR1	PF01926.23	2.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000010377	-	1077	-	ENSCSAVP00000010252	208 (aa)	-	H2YY41

Gene Model

Click here to download ENSCSAVG00000006042's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000006042's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000006042	-	57	40.336	ENSCSAVG00000000613	-	73	40.336
ENSCSAVG00000006042	-	79	31.429	ENSCSAVG00000010245	-	62	31.429
ENSCSAVG00000006042	-	73	34.194	ENSCSAVG00000001356	-	64	34.194
ENSCSAVG00000006042	-	79	37.500	ENSCSAVG00000010348	-	80	37.500
ENSCSAVG00000006042	-	70	30.573	ENSCSAVG00000002804	-	75	30.573
ENSCSAVG00000006042	-	70	30.263	ENSCSAVG00000008995	-	94	30.263
ENSCSAVG00000006042	-	75	33.333	ENSCSAVG00000002088	-	75	33.333
ENSCSAVG00000006042	-	73	33.121	ENSCSAVG00000008684	-	75	33.121
ENSCSAVG00000006042	-	91	30.653	ENSCSAVG00000009128	-	93	30.653
ENSCSAVG00000006042	-	75	34.591	ENSCSAVG00000000160	-	74	34.591
ENSCSAVG00000006042	-	76	33.735	ENSCSAVG00000011162	-	81	33.735
ENSCSAVG00000006042	-	72	34.395	ENSCSAVG00000009147	-	75	34.395

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000006042	-	89	65.591	ENSG00000144134	RABL2A	83	72.632	Homo_sapiens
ENSCSAVG00000006042	-	89	65.054	ENSG00000079974	RABL2B	81	71.250	Homo_sapiens
ENSCSAVG00000006042	-	87	70.556	ENSAPOG00000023708	rabl2	81	70.556	Acanthochromis_polyacanthus
ENSCSAVG00000006042	-	87	66.848	ENSAMEG00000003173	-	81	66.848	Ailuropoda_melanoleuca
ENSCSAVG00000006042	-	90	68.783	ENSACIG00000000670	rabl2	85	68.783	Amphilophus_citrinellus
ENSCSAVG00000006042	-	92	67.692	ENSAOCG00000008069	rabl2	87	67.692	Amphiprion_ocellaris
ENSCSAVG00000006042	-	92	68.205	ENSAPEG00000003164	rabl2	87	68.205	Amphiprion_percula
ENSCSAVG00000006042	-	94	65.854	ENSATEG00000001111	rabl2	92	65.854	Anabas_testudineus
ENSCSAVG00000006042	-	78	71.779	ENSACAG00000000418	-	93	71.779	Anolis_carolinensis
ENSCSAVG00000006042	-	88	67.204	ENSANAG00000021001	-	81	67.204	Aotus_nancymaae
ENSCSAVG00000006042	-	98	65.854	ENSACLG00000025632	rabl2	91	65.854	Astatotilapia_calliptera
ENSCSAVG00000006042	-	87	75.000	ENSAMXG00000040611	rabl2	81	75.000	Astyanax_mexicanus
ENSCSAVG00000006042	-	86	67.416	ENSBTAG00000004876	RABL2B	78	67.797	Bos_taurus
ENSCSAVG00000006042	-	86	67.978	ENSCJAG00000018414	-	78	67.978	Callithrix_jacchus
ENSCSAVG00000006042	-	87	68.333	ENSCAFG00020006938	-	81	68.333	Canis_lupus_dingo
ENSCSAVG00000006042	-	86	67.598	ENSCHIG00000000591	-	77	68.362	Capra_hircus
ENSCSAVG00000006042	-	90	64.948	ENSTSYG00000004323	-	85	64.948	Carlito_syrichta
ENSCSAVG00000006042	-	87	68.333	ENSCPOG00000026899	-	81	68.333	Cavia_porcellus
ENSCSAVG00000006042	-	86	68.539	ENSCCAG00000025944	-	78	68.539	Cebus_capucinus
ENSCSAVG00000006042	-	87	67.778	ENSCATG00000034307	-	79	67.778	Cercocebus_atys
ENSCSAVG00000006042	-	87	70.000	ENSCLAG00000017218	-	81	70.000	Chinchilla_lanigera
ENSCSAVG00000006042	-	86	69.101	ENSCSAG00000004698	-	77	69.101	Chlorocebus_sabaeus
ENSCSAVG00000006042	-	87	70.000	ENSCPBG00000011715	-	80	70.000	Chrysemys_picta_bellii
ENSCSAVG00000006042	-	99	88.889	ENSCING00000004961	-	97	88.889	Ciona_intestinalis
ENSCSAVG00000006042	-	87	68.333	ENSCANG00000030879	-	79	68.333	Colobus_angolensis_palliatus
ENSCSAVG00000006042	-	86	68.539	ENSCGRG00001021894	Rabl2	80	68.539	Cricetulus_griseus_chok1gshd
ENSCSAVG00000006042	-	87	71.111	ENSCSEG00000005479	rabl2	80	71.111	Cynoglossus_semilaevis
ENSCSAVG00000006042	-	92	67.188	ENSCVAG00000011432	rabl2	88	67.188	Cyprinodon_variegatus
ENSCSAVG00000006042	-	89	70.430	ENSDARG00000063321	rabl2	85	70.430	Danio_rerio
ENSCSAVG00000006042	-	87	69.444	ENSDNOG00000035151	-	81	69.444	Dasypus_novemcinctus
ENSCSAVG00000006042	-	87	68.889	ENSDORG00000000003	Rabl2	81	68.889	Dipodomys_ordii
ENSCSAVG00000006042	-	90	65.608	ENSEASG00005008239	-	85	65.608	Equus_asinus_asinus
ENSCSAVG00000006042	-	90	65.608	ENSECAG00000026942	-	85	65.608	Equus_caballus
ENSCSAVG00000006042	-	87	67.778	ENSFCAG00000033642	-	81	67.778	Felis_catus
ENSCSAVG00000006042	-	87	68.889	ENSFDAG00000002113	-	81	68.889	Fukomys_damarensis
ENSCSAVG00000006042	-	90	67.196	ENSFHEG00000015015	rabl2	72	67.196	Fundulus_heteroclitus
ENSCSAVG00000006042	-	88	70.652	ENSGMOG00000018928	rabl2	93	70.652	Gadus_morhua
ENSCSAVG00000006042	-	87	68.333	ENSGALG00000032458	RABL2B	81	68.333	Gallus_gallus
ENSCSAVG00000006042	-	90	67.196	ENSGAFG00000005188	rabl2	85	67.196	Gambusia_affinis
ENSCSAVG00000006042	-	87	68.333	ENSGACG00000012474	rabl2	81	68.333	Gasterosteus_aculeatus
ENSCSAVG00000006042	-	98	65.854	ENSHBUG00000010964	rabl2	91	65.854	Haplochromis_burtoni
ENSCSAVG00000006042	-	87	68.889	ENSHGLG00000005750	-	81	68.889	Heterocephalus_glaber_female
ENSCSAVG00000006042	-	87	68.889	ENSHGLG00100016281	-	81	68.889	Heterocephalus_glaber_male
ENSCSAVG00000006042	-	87	68.889	ENSSTOG00000002723	-	81	68.889	Ictidomys_tridecemlineatus
ENSCSAVG00000006042	-	87	68.889	ENSJJAG00000010792	Rabl2	81	68.889	Jaculus_jaculus
ENSCSAVG00000006042	-	90	68.783	ENSKMAG00000012723	rabl2	85	68.783	Kryptolebias_marmoratus
ENSCSAVG00000006042	-	87	71.111	ENSLBEG00000003644	rabl2	81	71.111	Labrus_bergylta
ENSCSAVG00000006042	-	92	69.792	ENSLACG00000003722	rabl2	86	69.792	Latimeria_chalumnae
ENSCSAVG00000006042	-	92	70.312	ENSLOCG00000016767	rabl2	85	70.312	Lepisosteus_oculatus
ENSCSAVG00000006042	-	87	68.333	ENSMFAG00000044775	-	79	68.333	Macaca_fascicularis
ENSCSAVG00000006042	-	87	68.333	ENSMMUG00000022914	RABL2B	79	68.333	Macaca_mulatta
ENSCSAVG00000006042	-	87	68.333	ENSMNEG00000028460	-	79	68.333	Macaca_nemestrina
ENSCSAVG00000006042	-	87	67.778	ENSMLEG00000032621	-	79	67.778	Mandrillus_leucophaeus
ENSCSAVG00000006042	-	90	70.899	ENSMAMG00000008168	rabl2	85	70.899	Mastacembelus_armatus
ENSCSAVG00000006042	-	89	69.519	ENSMZEG00005019758	rabl2	87	69.519	Maylandia_zebra
ENSCSAVG00000006042	-	86	68.539	ENSMAUG00000010955	Rabl2	80	68.539	Mesocricetus_auratus
ENSCSAVG00000006042	-	86	70.787	ENSMICG00000031301	-	78	70.787	Microcebus_murinus
ENSCSAVG00000006042	-	86	67.978	ENSMOCG00000002775	Rabl2	80	67.978	Microtus_ochrogaster
ENSCSAVG00000006042	-	89	68.280	ENSMODG00000010838	-	85	68.280	Monodelphis_domestica
ENSCSAVG00000006042	-	93	68.528	ENSMALG00000005944	rabl2	88	68.528	Monopterus_albus
ENSCSAVG00000006042	-	87	67.778	MGP_CAROLIEiJ_G0020176	Rabl2	80	67.778	Mus_caroli
ENSCSAVG00000006042	-	87	67.778	ENSMUSG00000022621	Rabl2	81	67.778	Mus_musculus
ENSCSAVG00000006042	-	87	67.778	MGP_PahariEiJ_G0020181	Rabl2	81	67.778	Mus_pahari
ENSCSAVG00000006042	-	87	67.778	MGP_SPRETEiJ_G0021073	Rabl2	81	67.778	Mus_spretus
ENSCSAVG00000006042	-	89	66.667	ENSMPUG00000001806	-	83	66.667	Mustela_putorius_furo
ENSCSAVG00000006042	-	87	67.778	ENSNGAG00000012843	Rabl2	78	67.778	Nannospalax_galili
ENSCSAVG00000006042	-	98	65.854	ENSNBRG00000000489	rabl2	91	65.854	Neolamprologus_brichardi
ENSCSAVG00000006042	-	86	67.978	ENSNLEG00000030435	-	78	67.978	Nomascus_leucogenys
ENSCSAVG00000006042	-	86	70.787	ENSODEG00000015650	-	80	70.787	Octodon_degus
ENSCSAVG00000006042	-	98	65.854	ENSONIG00000014885	rabl2	91	65.854	Oreochromis_niloticus
ENSCSAVG00000006042	-	87	70.556	ENSORLG00000009874	rabl2	80	70.556	Oryzias_latipes
ENSCSAVG00000006042	-	87	70.556	ENSORLG00020001721	rabl2	80	70.556	Oryzias_latipes_hni
ENSCSAVG00000006042	-	87	70.556	ENSORLG00015014268	rabl2	80	70.556	Oryzias_latipes_hsok
ENSCSAVG00000006042	-	92	68.229	ENSOMEG00000008576	rabl2	88	68.229	Oryzias_melastigma
ENSCSAVG00000006042	-	87	69.444	ENSOGAG00000009123	-	79	69.444	Otolemur_garnettii
ENSCSAVG00000006042	-	87	67.582	ENSPPRG00000014642	-	80	67.582	Panthera_pardus
ENSCSAVG00000006042	-	87	67.778	ENSPTIG00000018747	-	81	67.778	Panthera_tigris_altaica
ENSCSAVG00000006042	-	89	62.755	ENSPTRG00000014555	-	82	62.755	Pan_troglodytes
ENSCSAVG00000006042	-	89	64.103	ENSPANG00000036121	-	82	64.103	Papio_anubis
ENSCSAVG00000006042	-	91	70.051	ENSPKIG00000025372	rabl2	88	70.051	Paramormyrops_kingsleyae
ENSCSAVG00000006042	-	87	71.111	ENSPSIG00000014041	-	80	71.111	Pelodiscus_sinensis
ENSCSAVG00000006042	-	88	68.306	ENSPMGG00000012946	rabl2	89	68.306	Periophthalmus_magnuspinnatus
ENSCSAVG00000006042	-	87	67.222	ENSPEMG00000024045	Rabl2	81	67.222	Peromyscus_maniculatus_bairdii
ENSCSAVG00000006042	-	89	68.280	ENSPCIG00000012436	-	77	68.280	Phascolarctos_cinereus
ENSCSAVG00000006042	-	91	67.188	ENSPFOG00000017960	rabl2	86	67.188	Poecilia_formosa
ENSCSAVG00000006042	-	91	67.895	ENSPLAG00000015685	rabl2	86	67.895	Poecilia_latipinna
ENSCSAVG00000006042	-	91	67.895	ENSPMEG00000004703	rabl2	86	67.895	Poecilia_mexicana
ENSCSAVG00000006042	-	90	67.725	ENSPREG00000014761	rabl2	94	67.725	Poecilia_reticulata
ENSCSAVG00000006042	-	89	67.204	ENSPPYG00000012000	-	81	67.204	Pongo_abelii
ENSCSAVG00000006042	-	87	69.444	ENSPCOG00000024865	-	79	69.444	Propithecus_coquereli
ENSCSAVG00000006042	-	87	63.021	ENSPVAG00000004539	-	81	63.021	Pteropus_vampyrus
ENSCSAVG00000006042	-	98	65.854	ENSPNYG00000004845	rabl2	91	65.854	Pundamilia_nyererei
ENSCSAVG00000006042	-	87	72.778	ENSPNAG00000024254	rabl2	81	72.778	Pygocentrus_nattereri
ENSCSAVG00000006042	-	87	67.778	ENSRNOG00000013947	Rabl2	72	67.778	Rattus_norvegicus
ENSCSAVG00000006042	-	87	68.333	ENSRBIG00000033607	-	79	68.333	Rhinopithecus_bieti
ENSCSAVG00000006042	-	87	68.333	ENSRROG00000031130	-	79	68.333	Rhinopithecus_roxellana
ENSCSAVG00000006042	-	86	68.539	ENSSBOG00000033266	-	78	68.539	Saimiri_boliviensis_boliviensis
ENSCSAVG00000006042	-	92	68.586	ENSSFOG00015020738	rabl2	81	71.667	Scleropages_formosus
ENSCSAVG00000006042	-	90	69.312	ENSSMAG00000004606	rabl2	85	69.312	Scophthalmus_maximus
ENSCSAVG00000006042	-	98	66.829	ENSSDUG00000014765	rabl2	91	66.829	Seriola_dumerili
ENSCSAVG00000006042	-	75	66.879	ENSSSCG00000025041	-	92	66.879	Sus_scrofa
ENSCSAVG00000006042	-	87	66.667	ENSTGUG00000016028	-	87	66.667	Taeniopygia_guttata
ENSCSAVG00000006042	-	87	71.111	ENSTRUG00000012454	rabl2	81	71.111	Takifugu_rubripes
ENSCSAVG00000006042	-	92	68.718	ENSTNIG00000017951	rabl2	87	68.718	Tetraodon_nigroviridis
ENSCSAVG00000006042	-	86	68.539	ENSUAMG00000015761	-	79	68.539	Ursus_americanus
ENSCSAVG00000006042	-	87	68.333	ENSUMAG00000017116	-	81	68.333	Ursus_maritimus
ENSCSAVG00000006042	-	87	68.333	ENSVVUG00000025761	-	81	68.333	Vulpes_vulpes
ENSCSAVG00000006042	-	99	63.768	ENSXETG00000015712	rabl2b	92	63.768	Xenopus_tropicalis
ENSCSAVG00000006042	-	90	68.254	ENSXMAG00000004569	rabl2	85	68.254	Xiphophorus_maculatus