EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000006072 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 10671 bases
Position: chrreftig_16:935530-946200
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000010304	CPL	PF08144.11	6.6e-44	1	1
ENSCSAVP00000010305	CPL	PF08144.11	8.6e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000010430	-	1719	-	ENSCSAVP00000010305	530 (aa)	-	H2YY94
ENSCSAVT00000010429	-	1987	-	ENSCSAVP00000010304	596 (aa)	-	H2YY93

Gene Model

Click here to download ENSCSAVG00000006072's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000006072's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000006072	-	99	41.255	ENSG00000080608	PUM3	91	39.409	Homo_sapiens
ENSCSAVG00000006072	-	99	39.238	ENSAPOG00000020252	pum3	84	39.029	Acanthochromis_polyacanthus
ENSCSAVG00000006072	-	99	40.762	ENSAMEG00000012187	PUM3	91	39.409	Ailuropoda_melanoleuca
ENSCSAVG00000006072	-	99	36.692	ENSACIG00000009786	pum3	90	36.738	Amphilophus_citrinellus
ENSCSAVG00000006072	-	99	39.429	ENSAOCG00000004439	pum3	88	38.687	Amphiprion_ocellaris
ENSCSAVG00000006072	-	99	39.429	ENSAPEG00000020523	pum3	88	38.687	Amphiprion_percula
ENSCSAVG00000006072	-	99	39.810	ENSATEG00000005799	pum3	90	38.769	Anabas_testudineus
ENSCSAVG00000006072	-	99	41.412	ENSAPLG00000002920	PUM3	87	41.058	Anas_platyrhynchos
ENSCSAVG00000006072	-	91	42.116	ENSACAG00000003174	PUM3	80	42.236	Anolis_carolinensis
ENSCSAVG00000006072	-	99	41.255	ENSANAG00000024520	PUM3	86	40.381	Aotus_nancymaae
ENSCSAVG00000006072	-	99	37.786	ENSACLG00000001017	pum3	83	38.000	Astatotilapia_calliptera
ENSCSAVG00000006072	-	97	36.935	ENSAMXG00000020911	pum3	86	40.073	Astyanax_mexicanus
ENSCSAVG00000006072	-	99	40.571	ENSBTAG00000013357	PUM3	91	39.109	Bos_taurus
ENSCSAVG00000006072	-	95	32.882	WBGene00014165	puf-12	67	32.957	Caenorhabditis_elegans
ENSCSAVG00000006072	-	99	41.143	ENSCJAG00000010917	PUM3	91	39.474	Callithrix_jacchus
ENSCSAVG00000006072	-	99	40.190	ENSCAFG00000002035	PUM3	90	39.203	Canis_familiaris
ENSCSAVG00000006072	-	99	40.190	ENSCAFG00020026867	PUM3	90	39.203	Canis_lupus_dingo
ENSCSAVG00000006072	-	99	41.143	ENSCHIG00000021559	PUM3	91	39.604	Capra_hircus
ENSCSAVG00000006072	-	99	40.875	ENSTSYG00000007481	PUM3	91	39.180	Carlito_syrichta
ENSCSAVG00000006072	-	99	39.810	ENSCAPG00000010592	-	91	38.158	Cavia_aperea
ENSCSAVG00000006072	-	99	40.952	ENSCPOG00000008552	-	91	39.238	Cavia_porcellus
ENSCSAVG00000006072	-	99	41.333	ENSCCAG00000032650	PUM3	91	39.638	Cebus_capucinus
ENSCSAVG00000006072	-	99	41.445	ENSCATG00000024880	PUM3	91	39.737	Cercocebus_atys
ENSCSAVG00000006072	-	99	41.143	ENSCLAG00000011892	PUM3	90	39.933	Chinchilla_lanigera
ENSCSAVG00000006072	-	99	41.255	ENSCSAG00000008691	PUM3	91	39.573	Chlorocebus_sabaeus
ENSCSAVG00000006072	-	78	37.170	ENSCHOG00000002535	PUM3	61	37.799	Choloepus_hoffmanni
ENSCSAVG00000006072	-	99	40.649	ENSCPBG00000025470	PUM3	77	40.952	Chrysemys_picta_bellii
ENSCSAVG00000006072	-	93	73.387	ENSCING00000024199	-	98	72.101	Ciona_intestinalis
ENSCSAVG00000006072	-	99	41.445	ENSCANG00000006142	PUM3	91	39.573	Colobus_angolensis_palliatus
ENSCSAVG00000006072	-	99	40.952	ENSCGRG00001016402	Pum3	86	40.278	Cricetulus_griseus_chok1gshd
ENSCSAVG00000006072	-	99	40.952	ENSCGRG00000010207	Pum3	86	40.278	Cricetulus_griseus_crigri
ENSCSAVG00000006072	-	82	39.862	ENSCSEG00000001565	pum3	74	40.553	Cynoglossus_semilaevis
ENSCSAVG00000006072	-	53	32.639	ENSCVAG00000006550	pum3	64	33.910	Cyprinodon_variegatus
ENSCSAVG00000006072	-	99	41.603	ENSDARG00000087779	pum3	90	39.765	Danio_rerio
ENSCSAVG00000006072	-	99	35.041	ENSDNOG00000008157	PUM3	63	35.197	Dasypus_novemcinctus
ENSCSAVG00000006072	-	66	30.051	FBgn0015527	peng	54	30.583	Drosophila_melanogaster
ENSCSAVG00000006072	-	99	37.905	ENSETEG00000015331	PUM3	83	37.341	Echinops_telfairi
ENSCSAVG00000006072	-	92	36.473	ENSEBUG00000011586	pum3	76	36.207	Eptatretus_burgeri
ENSCSAVG00000006072	-	99	41.333	ENSEASG00005010350	PUM3	91	39.703	Equus_asinus_asinus
ENSCSAVG00000006072	-	99	41.333	ENSECAG00000017193	PUM3	91	39.703	Equus_caballus
ENSCSAVG00000006072	-	91	36.929	ENSEEUG00000010314	PUM3	91	36.266	Erinaceus_europaeus
ENSCSAVG00000006072	-	99	39.122	ENSELUG00000002215	pum3	82	39.591	Esox_lucius
ENSCSAVG00000006072	-	99	41.031	ENSFALG00000010509	PUM3	83	41.405	Ficedula_albicollis
ENSCSAVG00000006072	-	99	40.762	ENSFDAG00000021027	PUM3	91	39.399	Fukomys_damarensis
ENSCSAVG00000006072	-	72	39.323	ENSFHEG00000015576	pum3	72	40.260	Fundulus_heteroclitus
ENSCSAVG00000006072	-	96	39.173	ENSGMOG00000014217	pum3	93	39.293	Gadus_morhua
ENSCSAVG00000006072	-	99	41.794	ENSGALG00000010178	PUM3	81	42.286	Gallus_gallus
ENSCSAVG00000006072	-	67	39.779	ENSGAFG00000001930	pum3	75	36.569	Gambusia_affinis
ENSCSAVG00000006072	-	99	38.857	ENSGACG00000017878	pum3	94	39.544	Gasterosteus_aculeatus
ENSCSAVG00000006072	-	99	39.885	ENSGAGG00000018983	PUM3	87	39.416	Gopherus_agassizii
ENSCSAVG00000006072	-	99	41.445	ENSGGOG00000006143	PUM3	91	39.737	Gorilla_gorilla
ENSCSAVG00000006072	-	96	34.185	ENSHBUG00000012903	pum3	80	35.098	Haplochromis_burtoni
ENSCSAVG00000006072	-	99	41.524	ENSHGLG00000015868	-	90	40.433	Heterocephalus_glaber_female
ENSCSAVG00000006072	-	99	41.524	ENSHGLG00100018825	PUM3	90	40.433	Heterocephalus_glaber_male
ENSCSAVG00000006072	-	99	39.238	ENSHCOG00000010306	pum3	89	38.779	Hippocampus_comes
ENSCSAVG00000006072	-	98	41.491	ENSIPUG00000024801	pum3	92	40.134	Ictalurus_punctatus
ENSCSAVG00000006072	-	99	41.714	ENSSTOG00000009586	PUM3	91	40.198	Ictidomys_tridecemlineatus
ENSCSAVG00000006072	-	99	41.143	ENSJJAG00000012563	Pum3	91	40.000	Jaculus_jaculus
ENSCSAVG00000006072	-	99	36.260	ENSKMAG00000010277	pum3	90	35.117	Kryptolebias_marmoratus
ENSCSAVG00000006072	-	99	39.238	ENSLBEG00000012213	pum3	87	38.540	Labrus_bergylta
ENSCSAVG00000006072	-	99	38.213	ENSLACG00000008312	PUM3	90	37.353	Latimeria_chalumnae
ENSCSAVG00000006072	-	99	40.458	ENSLOCG00000012529	pum3	91	39.623	Lepisosteus_oculatus
ENSCSAVG00000006072	-	99	40.304	ENSLAFG00000017341	PUM3	91	38.852	Loxodonta_africana
ENSCSAVG00000006072	-	99	41.445	ENSMFAG00000001430	PUM3	91	39.737	Macaca_fascicularis
ENSCSAVG00000006072	-	99	41.445	ENSMMUG00000002362	PUM3	90	39.737	Macaca_mulatta
ENSCSAVG00000006072	-	99	41.445	ENSMNEG00000035288	PUM3	91	39.737	Macaca_nemestrina
ENSCSAVG00000006072	-	99	41.445	ENSMLEG00000034820	PUM3	91	39.737	Mandrillus_leucophaeus
ENSCSAVG00000006072	-	98	38.432	ENSMAMG00000022861	pum3	81	38.828	Mastacembelus_armatus
ENSCSAVG00000006072	-	99	37.786	ENSMZEG00005014205	pum3	88	37.186	Maylandia_zebra
ENSCSAVG00000006072	-	99	38.213	ENSMGAG00000002255	PUM3	88	37.158	Meleagris_gallopavo
ENSCSAVG00000006072	-	99	40.952	ENSMAUG00000009733	Pum3	86	40.104	Mesocricetus_auratus
ENSCSAVG00000006072	-	99	41.825	ENSMICG00000045916	PUM3	79	40.164	Microcebus_murinus
ENSCSAVG00000006072	-	99	39.810	ENSMOCG00000014830	-	88	39.267	Microtus_ochrogaster
ENSCSAVG00000006072	-	99	40.952	ENSMOCG00000019519	-	89	37.856	Microtus_ochrogaster
ENSCSAVG00000006072	-	99	35.878	ENSMMOG00000012184	pum3	81	36.381	Mola_mola
ENSCSAVG00000006072	-	99	40.190	ENSMODG00000015417	PUM3	72	40.494	Monodelphis_domestica
ENSCSAVG00000006072	-	99	39.429	ENSMALG00000022164	pum3	81	39.493	Monopterus_albus
ENSCSAVG00000006072	-	99	40.952	MGP_CAROLIEiJ_G0022845	Pum3	80	41.635	Mus_caroli
ENSCSAVG00000006072	-	99	40.952	ENSMUSG00000041360	Pum3	80	41.635	Mus_musculus
ENSCSAVG00000006072	-	99	40.762	MGP_PahariEiJ_G0014338	Pum3	80	41.445	Mus_pahari
ENSCSAVG00000006072	-	99	40.762	MGP_SPRETEiJ_G0023763	Pum3	80	41.445	Mus_spretus
ENSCSAVG00000006072	-	99	39.429	ENSMPUG00000005125	PUM3	86	38.850	Mustela_putorius_furo
ENSCSAVG00000006072	-	99	40.114	ENSMLUG00000002309	PUM3	91	38.588	Myotis_lucifugus
ENSCSAVG00000006072	-	99	39.048	ENSNGAG00000019468	Pum3	89	37.669	Nannospalax_galili
ENSCSAVG00000006072	-	96	35.953	ENSNBRG00000021370	pum3	79	36.311	Neolamprologus_brichardi
ENSCSAVG00000006072	-	99	41.065	ENSNLEG00000008712	PUM3	91	39.409	Nomascus_leucogenys
ENSCSAVG00000006072	-	74	39.252	ENSMEUG00000013606	-	79	38.298	Notamacropus_eugenii
ENSCSAVG00000006072	-	65	35.652	ENSOPRG00000004225	-	59	34.177	Ochotona_princeps
ENSCSAVG00000006072	-	99	40.952	ENSODEG00000003625	-	90	39.933	Octodon_degus
ENSCSAVG00000006072	-	99	38.185	ENSODEG00000016477	-	86	37.759	Octodon_degus
ENSCSAVG00000006072	-	99	38.168	ENSONIG00000012733	pum3	89	37.645	Oreochromis_niloticus
ENSCSAVG00000006072	-	99	39.429	ENSOANG00000014995	PUM3	99	39.344	Ornithorhynchus_anatinus
ENSCSAVG00000006072	-	99	40.190	ENSOCUG00000026104	-	92	38.651	Oryctolagus_cuniculus
ENSCSAVG00000006072	-	99	40.571	ENSOCUG00000004189	-	91	38.816	Oryctolagus_cuniculus
ENSCSAVG00000006072	-	99	39.122	ENSORLG00000014935	pum3	90	38.655	Oryzias_latipes
ENSCSAVG00000006072	-	99	39.122	ENSORLG00020002841	pum3	90	38.655	Oryzias_latipes_hni
ENSCSAVG00000006072	-	99	38.740	ENSORLG00015015906	pum3	90	38.487	Oryzias_latipes_hsok
ENSCSAVG00000006072	-	99	38.740	ENSOMEG00000009427	pum3	89	38.255	Oryzias_melastigma
ENSCSAVG00000006072	-	96	32.227	ENSOGAG00000033481	-	81	32.710	Otolemur_garnettii
ENSCSAVG00000006072	-	99	41.065	ENSOGAG00000008125	-	91	39.573	Otolemur_garnettii
ENSCSAVG00000006072	-	99	40.952	ENSOARG00000013337	PUM3	91	39.439	Ovis_aries
ENSCSAVG00000006072	-	99	41.445	ENSPPAG00000041337	PUM3	91	39.737	Pan_paniscus
ENSCSAVG00000006072	-	99	41.524	ENSPPRG00000000809	PUM3	91	39.803	Panthera_pardus
ENSCSAVG00000006072	-	99	42.095	ENSPTIG00000021934	PUM3	91	40.296	Panthera_tigris_altaica
ENSCSAVG00000006072	-	99	41.445	ENSPTRG00000020735	PUM3	91	39.737	Pan_troglodytes
ENSCSAVG00000006072	-	99	41.445	ENSPANG00000025118	PUM3	91	39.737	Papio_anubis
ENSCSAVG00000006072	-	99	39.544	ENSPKIG00000022249	pum3	94	37.148	Paramormyrops_kingsleyae
ENSCSAVG00000006072	-	99	40.458	ENSPSIG00000016272	PUM3	85	39.781	Pelodiscus_sinensis
ENSCSAVG00000006072	-	94	37.600	ENSPMGG00000021261	pum3	99	37.795	Periophthalmus_magnuspinnatus
ENSCSAVG00000006072	-	99	33.460	ENSPEMG00000019340	-	84	38.679	Peromyscus_maniculatus_bairdii
ENSCSAVG00000006072	-	99	40.076	ENSPCIG00000030598	PUM3	72	39.781	Phascolarctos_cinereus
ENSCSAVG00000006072	-	99	39.695	ENSPFOG00000001719	pum3	87	40.223	Poecilia_formosa
ENSCSAVG00000006072	-	99	39.504	ENSPLAG00000020010	pum3	86	39.209	Poecilia_latipinna
ENSCSAVG00000006072	-	99	39.504	ENSPMEG00000017451	pum3	86	39.209	Poecilia_mexicana
ENSCSAVG00000006072	-	99	41.445	ENSPPYG00000019255	PUM3	91	39.737	Pongo_abelii
ENSCSAVG00000006072	-	78	40.528	ENSPCAG00000005797	PUM3	61	40.909	Procavia_capensis
ENSCSAVG00000006072	-	99	41.445	ENSPCOG00000027325	PUM3	91	40.100	Propithecus_coquereli
ENSCSAVG00000006072	-	99	40.875	ENSPVAG00000016135	PUM3	82	39.478	Pteropus_vampyrus
ENSCSAVG00000006072	-	99	37.786	ENSPNYG00000016124	pum3	84	38.182	Pundamilia_nyererei
ENSCSAVG00000006072	-	98	40.727	ENSPNAG00000026524	pum3	86	40.437	Pygocentrus_nattereri
ENSCSAVG00000006072	-	99	40.381	ENSRNOG00000048356	RGD1308750	86	39.931	Rattus_norvegicus
ENSCSAVG00000006072	-	99	40.381	ENSRNOG00000012574	Pum3	86	39.931	Rattus_norvegicus
ENSCSAVG00000006072	-	99	41.445	ENSRBIG00000036924	PUM3	91	39.573	Rhinopithecus_bieti
ENSCSAVG00000006072	-	99	41.445	ENSRROG00000041089	PUM3	91	39.573	Rhinopithecus_roxellana
ENSCSAVG00000006072	-	99	41.143	ENSSBOG00000028066	PUM3	91	39.474	Saimiri_boliviensis_boliviensis
ENSCSAVG00000006072	-	99	39.885	ENSSHAG00000003730	PUM3	82	39.744	Sarcophilus_harrisii
ENSCSAVG00000006072	-	99	39.885	ENSSFOG00015018778	pum3	93	35.511	Scleropages_formosus
ENSCSAVG00000006072	-	99	39.429	ENSSMAG00000013236	pum3	89	38.487	Scophthalmus_maximus
ENSCSAVG00000006072	-	99	39.238	ENSSDUG00000001887	pum3	81	39.383	Seriola_dumerili
ENSCSAVG00000006072	-	99	39.429	ENSSLDG00000015766	pum3	82	39.564	Seriola_lalandi_dorsalis
ENSCSAVG00000006072	-	99	39.238	ENSSARG00000000579	PUM3	95	38.056	Sorex_araneus
ENSCSAVG00000006072	-	99	39.504	ENSSPUG00000001707	PUM3	88	39.336	Sphenodon_punctatus
ENSCSAVG00000006072	-	99	39.429	ENSSPAG00000003976	pum3	80	40.114	Stegastes_partitus
ENSCSAVG00000006072	-	99	40.762	ENSSSCG00000005227	PUM3	91	39.274	Sus_scrofa
ENSCSAVG00000006072	-	99	40.840	ENSTGUG00000005339	PUM3	84	41.220	Taeniopygia_guttata
ENSCSAVG00000006072	-	99	39.583	ENSTRUG00000004074	pum3	79	39.779	Takifugu_rubripes
ENSCSAVG00000006072	-	98	39.848	ENSTNIG00000010325	pum3	86	39.746	Tetraodon_nigroviridis
ENSCSAVG00000006072	-	99	31.429	ENSTBEG00000013058	PUM3	80	31.749	Tupaia_belangeri
ENSCSAVG00000006072	-	78	41.007	ENSTTRG00000001062	PUM3	61	41.388	Tursiops_truncatus
ENSCSAVG00000006072	-	99	37.524	ENSUMAG00000018443	PUM3	99	37.451	Ursus_maritimus
ENSCSAVG00000006072	-	99	42.095	ENSVPAG00000010766	PUM3	90	41.089	Vicugna_pacos
ENSCSAVG00000006072	-	99	40.190	ENSVVUG00000006527	PUM3	90	39.203	Vulpes_vulpes
ENSCSAVG00000006072	-	99	37.121	ENSXETG00000011707	pum3	83	37.132	Xenopus_tropicalis
ENSCSAVG00000006072	-	99	37.214	ENSXCOG00000006725	pum3	97	36.667	Xiphophorus_couchianus
ENSCSAVG00000006072	-	99	38.740	ENSXMAG00000002926	pum3	86	38.989	Xiphophorus_maculatus