EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000006093 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 5507 bases
Position: chrreftig_65:806958-812464
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000010349	RRM_1	PF00076.22	4.2e-33	1	2
ENSCSAVP00000010349	RRM_1	PF00076.22	4.2e-33	2	2
ENSCSAVP00000010348	RRM_1	PF00076.22	8.1e-33	1	2
ENSCSAVP00000010348	RRM_1	PF00076.22	8.1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000010473	-	1153	-	ENSCSAVP00000010348	233 (aa)	-	H2YYD7
ENSCSAVT00000010474	-	769	-	ENSCSAVP00000010349	195 (aa)	-	H2YYD8

Gene Model

Click here to download ENSCSAVG00000006093's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000006093's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000006093	-	65	70.866	ENSCSAVG00000003567	-	76	72.441
ENSCSAVG00000006093	-	96	38.776	ENSCSAVG00000002581	-	88	39.655
ENSCSAVG00000006093	-	54	37.963	ENSCSAVG00000007369	-	59	38.532
ENSCSAVG00000006093	-	83	36.508	ENSCSAVG00000011376	-	73	37.234

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000006093	-	85	69.591	ENSACIG00000002623	-	90	71.930	Amphilophus_citrinellus
ENSCSAVG00000006093	-	91	67.895	ENSACLG00000021693	-	76	67.895	Astatotilapia_calliptera
ENSCSAVG00000006093	-	91	70.950	ENSACLG00000005676	-	73	72.376	Astatotilapia_calliptera
ENSCSAVG00000006093	-	90	59.574	WBGene00004700	rsp-3	73	62.766	Caenorhabditis_elegans
ENSCSAVG00000006093	-	66	75.194	ENSCING00000000257	-	75	75.194	Ciona_intestinalis
ENSCSAVG00000006093	-	95	91.892	ENSCING00000007375	-	79	91.892	Ciona_intestinalis
ENSCSAVG00000006093	-	94	58.947	FBgn0283477	SF2	71	62.295	Drosophila_melanogaster
ENSCSAVG00000006093	-	91	69.101	ENSEBUG00000009582	-	78	69.101	Eptatretus_burgeri
ENSCSAVG00000006093	-	92	68.984	ENSFHEG00000017425	-	92	70.690	Fundulus_heteroclitus
ENSCSAVG00000006093	-	85	70.414	ENSGMOG00000010606	-	90	71.006	Gadus_morhua
ENSCSAVG00000006093	-	91	71.823	ENSGAFG00000012721	-	73	72.928	Gambusia_affinis
ENSCSAVG00000006093	-	93	68.063	ENSGAFG00000000609	-	75	70.053	Gambusia_affinis
ENSCSAVG00000006093	-	85	70.414	ENSGACG00000011094	-	90	71.598	Gasterosteus_aculeatus
ENSCSAVG00000006093	-	51	52.475	ENSHBUG00000015600	-	86	52.475	Haplochromis_burtoni
ENSCSAVG00000006093	-	91	68.254	ENSHBUG00000015576	-	76	68.254	Haplochromis_burtoni
ENSCSAVG00000006093	-	91	66.667	ENSHCOG00000008016	-	73	66.667	Hippocampus_comes
ENSCSAVG00000006093	-	91	69.780	ENSMFAG00000034223	-	61	70.330	Macaca_fascicularis
ENSCSAVG00000006093	-	91	68.085	ENSMZEG00005019071	-	92	69.886	Maylandia_zebra
ENSCSAVG00000006093	-	91	70.950	ENSMZEG00005007947	-	73	72.376	Maylandia_zebra
ENSCSAVG00000006093	-	91	68.681	ENSMMOG00000018849	-	74	70.330	Mola_mola
ENSCSAVG00000006093	-	91	70.950	ENSNBRG00000019981	-	73	72.376	Neolamprologus_brichardi
ENSCSAVG00000006093	-	91	71.508	ENSNBRG00000008134	-	71	73.743	Neolamprologus_brichardi
ENSCSAVG00000006093	-	79	59.740	ENSOPRG00000004745	-	92	59.740	Ochotona_princeps
ENSCSAVG00000006093	-	91	67.539	ENSONIG00000004857	-	75	69.634	Oreochromis_niloticus
ENSCSAVG00000006093	-	60	65.833	ENSOANG00000007320	-	52	78.571	Ornithorhynchus_anatinus
ENSCSAVG00000006093	-	79	46.795	ENSOCUG00000026856	-	89	49.359	Oryctolagus_cuniculus
ENSCSAVG00000006093	-	91	69.399	ENSORLG00000005314	-	71	72.131	Oryzias_latipes
ENSCSAVG00000006093	-	91	69.399	ENSORLG00015015497	-	71	72.131	Oryzias_latipes_hsok
ENSCSAVG00000006093	-	91	68.617	ENSOMEG00000017711	-	76	66.495	Oryzias_melastigma
ENSCSAVG00000006093	-	85	71.598	ENSPLAG00000019613	-	67	72.781	Poecilia_latipinna
ENSCSAVG00000006093	-	91	70.718	ENSPLAG00000019553	-	87	71.098	Poecilia_latipinna
ENSCSAVG00000006093	-	93	68.783	ENSPREG00000016792	-	75	70.811	Poecilia_reticulata
ENSCSAVG00000006093	-	91	70.950	ENSPNYG00000017115	-	73	72.376	Pundamilia_nyererei
ENSCSAVG00000006093	-	91	67.895	ENSPNYG00000020651	-	73	70.000	Pundamilia_nyererei
ENSCSAVG00000006093	-	96	70.681	ENSSFOG00015004989	-	66	71.823	Scleropages_formosus
ENSCSAVG00000006093	-	91	65.990	ENSSDUG00000003887	-	75	67.513	Seriola_dumerili
ENSCSAVG00000006093	-	91	70.391	ENSTRUG00000017058	-	75	71.667	Takifugu_rubripes
ENSCSAVG00000006093	-	91	66.667	ENSTNIG00000009993	-	75	69.613	Tetraodon_nigroviridis
ENSCSAVG00000006093	-	91	70.718	ENSXCOG00000009643	-	78	69.681	Xiphophorus_couchianus
ENSCSAVG00000006093	-	93	72.283	ENSXCOG00000017888	-	78	70.430	Xiphophorus_couchianus
ENSCSAVG00000006093	-	93	68.421	ENSXMAG00000010797	-	75	70.430	Xiphophorus_maculatus