EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000006137 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 27789 bases
Position: chrreftig_16:949615-977403
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000010413	Ribonuclease_3	PF00636.26	5.8e-62	1	2
ENSCSAVP00000010413	Ribonuclease_3	PF00636.26	5.8e-62	2	2
ENSCSAVP00000010414	Ribonuclease_3	PF00636.26	5.3e-26	1	1
ENSCSAVP00000010414	PAZ	PF02170.22	2.4e-33	1	1
ENSCSAVP00000010413	PAZ	PF02170.22	2.8e-33	1	1
ENSCSAVP00000010413	Ribonucleas_3_3	PF14622.6	5.6e-27	1	1
ENSCSAVP00000010414	Dicer_dimer	PF03368.14	5.5e-24	1	1
ENSCSAVP00000010413	Dicer_dimer	PF03368.14	9.3e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000010540	-	3609	-	ENSCSAVP00000010414	1203 (aa)	-	H2YYK3
ENSCSAVT00000010539	-	3689	-	ENSCSAVP00000010413	1222 (aa)	-	H2YYK2

Gene Model

Click here to download ENSCSAVG00000006137's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000006137's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000006137	-	86	79.592	ENSG00000100697	DICER1	55	79.592	Homo_sapiens
ENSCSAVG00000006137	-	86	79.592	ENSAPOG00000020381	dicer1	53	79.592	Acanthochromis_polyacanthus
ENSCSAVG00000006137	-	99	46.802	ENSAMEG00000006447	DICER1	52	79.592	Ailuropoda_melanoleuca
ENSCSAVG00000006137	-	81	79.592	ENSACIG00000000890	dicer1	51	79.592	Amphilophus_citrinellus
ENSCSAVG00000006137	-	86	79.592	ENSAOCG00000023381	dicer1	54	79.592	Amphiprion_ocellaris
ENSCSAVG00000006137	-	86	79.592	ENSAPEG00000022809	dicer1	52	79.592	Amphiprion_percula
ENSCSAVG00000006137	-	100	41.552	ENSATEG00000014048	dicer1	53	79.592	Anabas_testudineus
ENSCSAVG00000006137	-	99	41.899	ENSAPLG00000012407	DICER1	52	78.571	Anas_platyrhynchos
ENSCSAVG00000006137	-	99	47.284	ENSACAG00000013033	DICER1	52	78.571	Anolis_carolinensis
ENSCSAVG00000006137	-	86	79.592	ENSANAG00000023622	DICER1	55	79.592	Aotus_nancymaae
ENSCSAVG00000006137	-	99	46.382	ENSACLG00000007920	dicer1	52	79.592	Astatotilapia_calliptera
ENSCSAVG00000006137	-	99	41.566	ENSAMXG00000010730	dicer1	50	75.962	Astyanax_mexicanus
ENSCSAVG00000006137	-	86	79.592	ENSBTAG00000012852	DICER1	53	79.592	Bos_taurus
ENSCSAVG00000006137	-	92	38.584	WBGene00000939	dcr-1	51	50.000	Caenorhabditis_elegans
ENSCSAVG00000006137	-	86	79.592	ENSCJAG00000006225	DICER1	55	79.592	Callithrix_jacchus
ENSCSAVG00000006137	-	99	46.576	ENSCAFG00000017701	DICER1	52	79.592	Canis_familiaris
ENSCSAVG00000006137	-	99	46.576	ENSCAFG00020014247	DICER1	52	79.592	Canis_lupus_dingo
ENSCSAVG00000006137	-	99	46.396	ENSCHIG00000015885	DICER1	52	79.592	Capra_hircus
ENSCSAVG00000006137	-	81	64.865	ENSTSYG00000002044	DICER1	51	64.865	Carlito_syrichta
ENSCSAVG00000006137	-	76	75.510	ENSCAPG00000000101	DICER1	58	53.772	Cavia_aperea
ENSCSAVG00000006137	-	86	79.592	ENSCPOG00000004221	DICER1	52	79.592	Cavia_porcellus
ENSCSAVG00000006137	-	86	79.592	ENSCCAG00000027063	DICER1	55	79.592	Cebus_capucinus
ENSCSAVG00000006137	-	86	79.592	ENSCATG00000031403	DICER1	52	79.592	Cercocebus_atys
ENSCSAVG00000006137	-	99	47.389	ENSCLAG00000015000	DICER1	52	79.592	Chinchilla_lanigera
ENSCSAVG00000006137	-	86	79.592	ENSCSAG00000010696	DICER1	52	79.592	Chlorocebus_sabaeus
ENSCSAVG00000006137	-	86	78.571	ENSCPBG00000009859	DICER1	52	78.571	Chrysemys_picta_bellii
ENSCSAVG00000006137	-	99	72.500	ENSCING00000008383	-	67	72.261	Ciona_intestinalis
ENSCSAVG00000006137	-	86	79.592	ENSCANG00000031429	DICER1	52	79.592	Colobus_angolensis_palliatus
ENSCSAVG00000006137	-	99	47.594	ENSCGRG00001008088	Dicer1	52	79.592	Cricetulus_griseus_chok1gshd
ENSCSAVG00000006137	-	99	47.594	ENSCGRG00000012281	Dicer1	52	79.592	Cricetulus_griseus_crigri
ENSCSAVG00000006137	-	84	58.854	ENSCSEG00000017078	dicer1	56	58.854	Cynoglossus_semilaevis
ENSCSAVG00000006137	-	99	46.977	ENSCVAG00000020035	dicer1	54	79.592	Cyprinodon_variegatus
ENSCSAVG00000006137	-	99	48.259	ENSDARG00000001129	dicer1	54	79.592	Danio_rerio
ENSCSAVG00000006137	-	99	44.721	ENSDNOG00000004190	DICER1	57	50.548	Dasypus_novemcinctus
ENSCSAVG00000006137	-	86	79.592	ENSDORG00000006215	Dicer1	52	79.592	Dipodomys_ordii
ENSCSAVG00000006137	-	72	74.091	ENSETEG00000011000	DICER1	50	76.531	Echinops_telfairi
ENSCSAVG00000006137	-	89	74.757	ENSEBUG00000013802	dicer1	58	74.757	Eptatretus_burgeri
ENSCSAVG00000006137	-	86	79.592	ENSEASG00005021485	DICER1	52	79.592	Equus_asinus_asinus
ENSCSAVG00000006137	-	86	79.592	ENSECAG00000006079	DICER1	53	79.592	Equus_caballus
ENSCSAVG00000006137	-	83	57.069	ENSELUG00000024317	dicer1	52	79.592	Esox_lucius
ENSCSAVG00000006137	-	99	46.839	ENSFCAG00000003535	DICER1	51	84.375	Felis_catus
ENSCSAVG00000006137	-	86	78.571	ENSFALG00000002516	DICER1	52	78.571	Ficedula_albicollis
ENSCSAVG00000006137	-	86	79.592	ENSFDAG00000021287	DICER1	52	79.592	Fukomys_damarensis
ENSCSAVG00000006137	-	100	42.752	ENSFHEG00000016839	dicer1	57	50.630	Fundulus_heteroclitus
ENSCSAVG00000006137	-	81	64.865	ENSGMOG00000006057	dicer1	50	64.865	Gadus_morhua
ENSCSAVG00000006137	-	71	72.477	ENSGALG00000010999	DICER1	57	78.571	Gallus_gallus
ENSCSAVG00000006137	-	99	47.549	ENSGAFG00000010728	dicer1	50	79.592	Gambusia_affinis
ENSCSAVG00000006137	-	86	79.592	ENSGACG00000020134	dicer1	52	79.592	Gasterosteus_aculeatus
ENSCSAVG00000006137	-	96	46.008	ENSGAGG00000016379	DICER1	82	54.473	Gopherus_agassizii
ENSCSAVG00000006137	-	86	79.592	ENSGGOG00000003760	DICER1	55	79.592	Gorilla_gorilla
ENSCSAVG00000006137	-	100	41.847	ENSHBUG00000018941	dicer1	52	79.592	Haplochromis_burtoni
ENSCSAVG00000006137	-	99	47.348	ENSHGLG00000018124	DICER1	52	79.592	Heterocephalus_glaber_female
ENSCSAVG00000006137	-	99	47.348	ENSHGLG00100010985	DICER1	52	79.592	Heterocephalus_glaber_male
ENSCSAVG00000006137	-	86	78.571	ENSHCOG00000015738	dicer1	53	78.571	Hippocampus_comes
ENSCSAVG00000006137	-	78	43.684	ENSIPUG00000005080	dicer1	66	47.819	Ictalurus_punctatus
ENSCSAVG00000006137	-	99	47.121	ENSSTOG00000022439	DICER1	52	79.592	Ictidomys_tridecemlineatus
ENSCSAVG00000006137	-	86	79.592	ENSJJAG00000010766	Dicer1	52	79.592	Jaculus_jaculus
ENSCSAVG00000006137	-	88	78.571	ENSKMAG00000001429	dicer1	89	56.689	Kryptolebias_marmoratus
ENSCSAVG00000006137	-	86	79.592	ENSLBEG00000008928	dicer1	53	79.592	Labrus_bergylta
ENSCSAVG00000006137	-	87	75.926	ENSLACG00000008302	DICER1	52	75.926	Latimeria_chalumnae
ENSCSAVG00000006137	-	99	41.064	ENSLOCG00000008544	dicer1	52	79.592	Lepisosteus_oculatus
ENSCSAVG00000006137	-	86	79.592	ENSLAFG00000013632	DICER1	53	79.592	Loxodonta_africana
ENSCSAVG00000006137	-	86	79.592	ENSMFAG00000002987	DICER1	55	79.592	Macaca_fascicularis
ENSCSAVG00000006137	-	86	79.592	ENSMMUG00000023305	DICER1	55	79.592	Macaca_mulatta
ENSCSAVG00000006137	-	86	79.592	ENSMNEG00000021073	DICER1	55	79.592	Macaca_nemestrina
ENSCSAVG00000006137	-	86	79.592	ENSMLEG00000034800	DICER1	55	79.592	Mandrillus_leucophaeus
ENSCSAVG00000006137	-	86	79.592	ENSMAMG00000016806	dicer1	52	79.592	Mastacembelus_armatus
ENSCSAVG00000006137	-	99	46.382	ENSMZEG00005016989	dicer1	52	79.592	Maylandia_zebra
ENSCSAVG00000006137	-	90	78.571	ENSMGAG00000013207	DICER1	52	78.571	Meleagris_gallopavo
ENSCSAVG00000006137	-	99	47.637	ENSMAUG00000009936	Dicer1	52	79.592	Mesocricetus_auratus
ENSCSAVG00000006137	-	86	78.571	ENSMICG00000011690	DICER1	55	78.571	Microcebus_murinus
ENSCSAVG00000006137	-	99	47.590	ENSMOCG00000018636	Dicer1	52	79.592	Microtus_ochrogaster
ENSCSAVG00000006137	-	99	46.625	ENSMMOG00000018531	dicer1	66	46.926	Mola_mola
ENSCSAVG00000006137	-	86	78.571	ENSMODG00000012624	DICER1	52	78.571	Monodelphis_domestica
ENSCSAVG00000006137	-	86	79.592	ENSMALG00000009445	dicer1	52	79.592	Monopterus_albus
ENSCSAVG00000006137	-	86	79.592	ENSMUSG00000041415	Dicer1	52	79.592	Mus_musculus
ENSCSAVG00000006137	-	99	46.762	ENSMPUG00000003130	DICER1	57	54.299	Mustela_putorius_furo
ENSCSAVG00000006137	-	86	78.788	ENSMLUG00000003991	DICER1	52	78.788	Myotis_lucifugus
ENSCSAVG00000006137	-	99	47.803	ENSNGAG00000010103	Dicer1	52	79.592	Nannospalax_galili
ENSCSAVG00000006137	-	86	59.804	ENSNBRG00000022306	dicer1	53	59.804	Neolamprologus_brichardi
ENSCSAVG00000006137	-	86	79.592	ENSNLEG00000017309	DICER1	55	79.592	Nomascus_leucogenys
ENSCSAVG00000006137	-	86	79.592	ENSOPRG00000014698	DICER1	52	79.592	Ochotona_princeps
ENSCSAVG00000006137	-	99	47.256	ENSODEG00000008594	DICER1	52	79.592	Octodon_degus
ENSCSAVG00000006137	-	92	60.354	ENSONIG00000010424	dicer1	51	79.592	Oreochromis_niloticus
ENSCSAVG00000006137	-	99	41.700	ENSOANG00000012034	DICER1	52	78.571	Ornithorhynchus_anatinus
ENSCSAVG00000006137	-	86	79.592	ENSOCUG00000010849	DICER1	52	79.592	Oryctolagus_cuniculus
ENSCSAVG00000006137	-	84	54.647	ENSORLG00000011022	dicer1	58	64.343	Oryzias_latipes
ENSCSAVG00000006137	-	99	47.417	ENSORLG00020021795	dicer1	58	64.343	Oryzias_latipes_hni
ENSCSAVG00000006137	-	86	79.592	ENSOMEG00000018679	dicer1	54	79.592	Oryzias_melastigma
ENSCSAVG00000006137	-	86	78.571	ENSOGAG00000010719	DICER1	54	78.571	Otolemur_garnettii
ENSCSAVG00000006137	-	99	46.622	ENSOARG00000015465	DICER1	52	79.592	Ovis_aries
ENSCSAVG00000006137	-	86	79.592	ENSPPAG00000035143	DICER1	52	79.592	Pan_paniscus
ENSCSAVG00000006137	-	99	46.763	ENSPPRG00000001322	DICER1	54	79.592	Panthera_pardus
ENSCSAVG00000006137	-	86	79.592	ENSPTIG00000008215	DICER1	54	79.592	Panthera_tigris_altaica
ENSCSAVG00000006137	-	86	79.592	ENSPTRG00000023484	DICER1	55	79.592	Pan_troglodytes
ENSCSAVG00000006137	-	86	79.592	ENSPANG00000023078	DICER1	55	79.592	Papio_anubis
ENSCSAVG00000006137	-	86	78.571	ENSPKIG00000019962	dicer1	53	78.571	Paramormyrops_kingsleyae
ENSCSAVG00000006137	-	99	46.606	ENSPSIG00000010801	DICER1	52	78.571	Pelodiscus_sinensis
ENSCSAVG00000006137	-	100	41.619	ENSPMGG00000010210	dicer1	58	55.663	Periophthalmus_magnuspinnatus
ENSCSAVG00000006137	-	86	79.592	ENSPEMG00000014125	Dicer1	52	79.592	Peromyscus_maniculatus_bairdii
ENSCSAVG00000006137	-	61	87.097	ENSPMAG00000009075	dicer1	80	87.097	Petromyzon_marinus
ENSCSAVG00000006137	-	86	79.592	ENSPCIG00000018004	DICER1	52	79.592	Phascolarctos_cinereus
ENSCSAVG00000006137	-	99	47.450	ENSPFOG00000008531	dicer1	54	79.592	Poecilia_formosa
ENSCSAVG00000006137	-	99	47.450	ENSPLAG00000008539	dicer1	53	79.592	Poecilia_latipinna
ENSCSAVG00000006137	-	86	79.592	ENSPMEG00000014284	dicer1	54	79.592	Poecilia_mexicana
ENSCSAVG00000006137	-	99	47.564	ENSPREG00000012120	dicer1	54	79.592	Poecilia_reticulata
ENSCSAVG00000006137	-	86	79.592	ENSPPYG00000006112	DICER1	52	79.592	Pongo_abelii
ENSCSAVG00000006137	-	99	46.875	ENSPCOG00000022909	DICER1	55	78.571	Propithecus_coquereli
ENSCSAVG00000006137	-	95	51.389	ENSPVAG00000004811	DICER1	53	79.592	Pteropus_vampyrus
ENSCSAVG00000006137	-	99	46.535	ENSPNYG00000017939	dicer1	52	79.592	Pundamilia_nyererei
ENSCSAVG00000006137	-	84	55.921	ENSPNAG00000001012	dicer1	56	55.921	Pygocentrus_nattereri
ENSCSAVG00000006137	-	99	47.783	ENSRNOG00000010711	Dicer1	52	79.592	Rattus_norvegicus
ENSCSAVG00000006137	-	86	79.592	ENSRBIG00000020932	DICER1	55	79.592	Rhinopithecus_bieti
ENSCSAVG00000006137	-	86	79.592	ENSRROG00000031891	DICER1	55	79.592	Rhinopithecus_roxellana
ENSCSAVG00000006137	-	86	79.592	ENSSBOG00000028660	DICER1	55	79.592	Saimiri_boliviensis_boliviensis
ENSCSAVG00000006137	-	99	47.112	ENSSHAG00000012077	DICER1	52	78.571	Sarcophilus_harrisii
ENSCSAVG00000006137	-	86	79.592	ENSSFOG00015010804	dicer1	57	79.592	Scleropages_formosus
ENSCSAVG00000006137	-	86	79.592	ENSSMAG00000015520	dicer1	52	79.592	Scophthalmus_maximus
ENSCSAVG00000006137	-	86	79.592	ENSSDUG00000021652	dicer1	52	79.592	Seriola_dumerili
ENSCSAVG00000006137	-	82	79.592	ENSSLDG00000012087	dicer1	52	79.592	Seriola_lalandi_dorsalis
ENSCSAVG00000006137	-	99	46.830	ENSSPUG00000016222	DICER1	57	77.551	Sphenodon_punctatus
ENSCSAVG00000006137	-	100	40.747	ENSSPAG00000017128	dicer1	54	79.592	Stegastes_partitus
ENSCSAVG00000006137	-	83	84.375	ENSSSCG00000028225	DICER1	52	84.375	Sus_scrofa
ENSCSAVG00000006137	-	99	47.517	ENSTGUG00000012658	DICER1	52	78.571	Taeniopygia_guttata
ENSCSAVG00000006137	-	100	41.210	ENSTNIG00000005441	dicer1	52	79.592	Tetraodon_nigroviridis
ENSCSAVG00000006137	-	94	85.714	ENSTBEG00000012374	DICER1	51	79.592	Tupaia_belangeri
ENSCSAVG00000006137	-	86	79.592	ENSUAMG00000011912	DICER1	53	79.592	Ursus_americanus
ENSCSAVG00000006137	-	99	47.364	ENSUMAG00000003027	DICER1	59	84.375	Ursus_maritimus
ENSCSAVG00000006137	-	78	75.510	ENSVPAG00000006817	DICER1	51	61.194	Vicugna_pacos
ENSCSAVG00000006137	-	99	46.576	ENSVVUG00000018855	DICER1	51	84.375	Vulpes_vulpes
ENSCSAVG00000006137	-	86	77.551	ENSXETG00000023315	dicer1	54	77.551	Xenopus_tropicalis
ENSCSAVG00000006137	-	93	70.485	ENSXCOG00000009353	dicer1	56	79.592	Xiphophorus_couchianus
ENSCSAVG00000006137	-	99	47.483	ENSXMAG00000015721	dicer1	54	79.592	Xiphophorus_maculatus