EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000006222 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 12629 bases
Position: chrreftig_26:724933-737561
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000010582	R3H	PF01424.22	4.9e-10	1	1
ENSCSAVP00000010583	R3H	PF01424.22	5.2e-10	1	1
ENSCSAVP00000010582	ResIII	PF04851.15	3.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000010711	-	3015	-	ENSCSAVP00000010582	989 (aa)	-	H2YZ21
ENSCSAVT00000010712	-	1926	-	ENSCSAVP00000010583	642 (aa)	-	H2YZ22

Gene Model

Click here to download ENSCSAVG00000006222's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000006222's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000006222	-	99	46.766	ENSG00000132740	IGHMBP2	99	46.766	Homo_sapiens
ENSCSAVG00000006222	-	99	44.786	ENSAPOG00000009399	ighmbp2	99	45.780	Acanthochromis_polyacanthus
ENSCSAVG00000006222	-	99	46.766	ENSAMEG00000008568	IGHMBP2	99	46.752	Ailuropoda_melanoleuca
ENSCSAVG00000006222	-	99	45.573	ENSACIG00000004670	ighmbp2	99	45.792	Amphilophus_citrinellus
ENSCSAVG00000006222	-	99	45.382	ENSAOCG00000019390	ighmbp2	99	45.780	Amphiprion_ocellaris
ENSCSAVG00000006222	-	99	45.283	ENSAPEG00000021713	ighmbp2	99	45.680	Amphiprion_percula
ENSCSAVG00000006222	-	99	45.276	ENSATEG00000010246	ighmbp2	95	45.731	Anabas_testudineus
ENSCSAVG00000006222	-	99	43.570	ENSAPLG00000003251	IGHMBP2	99	44.044	Anas_platyrhynchos
ENSCSAVG00000006222	-	99	44.529	ENSACAG00000013702	IGHMBP2	99	43.282	Anolis_carolinensis
ENSCSAVG00000006222	-	91	55.455	ENSANAG00000027309	IGHMBP2	99	46.567	Aotus_nancymaae
ENSCSAVG00000006222	-	99	44.638	ENSACLG00000014140	ighmbp2	99	45.680	Astatotilapia_calliptera
ENSCSAVG00000006222	-	99	44.262	ENSAMXG00000000503	ighmbp2	99	44.455	Astyanax_mexicanus
ENSCSAVG00000006222	-	99	45.776	ENSBTAG00000022185	IGHMBP2	99	45.829	Bos_taurus
ENSCSAVG00000006222	-	99	45.535	ENSCJAG00000015887	IGHMBP2	93	45.437	Callithrix_jacchus
ENSCSAVG00000006222	-	99	46.100	ENSCAFG00000010745	IGHMBP2	99	45.994	Canis_familiaris
ENSCSAVG00000006222	-	99	43.881	ENSCAFG00020015362	IGHMBP2	89	43.194	Canis_lupus_dingo
ENSCSAVG00000006222	-	99	46.305	ENSCHIG00000011703	IGHMBP2	99	46.176	Capra_hircus
ENSCSAVG00000006222	-	97	45.190	ENSCAPG00000001471	IGHMBP2	98	45.094	Cavia_aperea
ENSCSAVG00000006222	-	99	45.401	ENSCPOG00000007063	IGHMBP2	94	45.077	Cavia_porcellus
ENSCSAVG00000006222	-	99	46.085	ENSCCAG00000027106	IGHMBP2	99	45.517	Cebus_capucinus
ENSCSAVG00000006222	-	99	42.022	ENSCATG00000031229	IGHMBP2	99	42.572	Cercocebus_atys
ENSCSAVG00000006222	-	99	44.327	ENSCLAG00000015500	IGHMBP2	99	44.519	Chinchilla_lanigera
ENSCSAVG00000006222	-	99	45.427	ENSCSAG00000009185	IGHMBP2	99	45.222	Chlorocebus_sabaeus
ENSCSAVG00000006222	-	93	45.825	ENSCPBG00000008799	IGHMBP2	100	45.825	Chrysemys_picta_bellii
ENSCSAVG00000006222	-	99	65.439	ENSCING00000005102	zf(an1/a20like)-2	99	65.625	Ciona_intestinalis
ENSCSAVG00000006222	-	90	49.182	ENSCANG00000043714	IGHMBP2	99	44.862	Colobus_angolensis_palliatus
ENSCSAVG00000006222	-	99	44.995	ENSCGRG00001019126	Ighmbp2	99	44.739	Cricetulus_griseus_chok1gshd
ENSCSAVG00000006222	-	99	44.995	ENSCGRG00000009642	Ighmbp2	99	44.739	Cricetulus_griseus_crigri
ENSCSAVG00000006222	-	99	45.482	ENSCSEG00000007513	ighmbp2	99	45.437	Cynoglossus_semilaevis
ENSCSAVG00000006222	-	99	42.661	ENSCVAG00000007876	ighmbp2	98	45.361	Cyprinodon_variegatus
ENSCSAVG00000006222	-	99	44.521	ENSDARG00000069274	ighmbp2	99	44.675	Danio_rerio
ENSCSAVG00000006222	-	99	45.139	ENSDNOG00000002334	IGHMBP2	99	44.641	Dasypus_novemcinctus
ENSCSAVG00000006222	-	100	41.041	ENSDORG00000026350	Ighmbp2	99	43.897	Dipodomys_ordii
ENSCSAVG00000006222	-	92	46.893	ENSETEG00000003178	IGHMBP2	93	46.893	Echinops_telfairi
ENSCSAVG00000006222	-	99	41.831	ENSEBUG00000010471	ighmbp2	100	41.831	Eptatretus_burgeri
ENSCSAVG00000006222	-	99	45.854	ENSEASG00005007735	IGHMBP2	99	46.537	Equus_asinus_asinus
ENSCSAVG00000006222	-	96	45.610	ENSECAG00000019360	IGHMBP2	98	46.465	Equus_caballus
ENSCSAVG00000006222	-	99	43.225	ENSELUG00000023450	ighmbp2	99	42.857	Esox_lucius
ENSCSAVG00000006222	-	99	45.784	ENSFCAG00000010879	IGHMBP2	99	46.373	Felis_catus
ENSCSAVG00000006222	-	99	41.935	ENSFALG00000011604	IGHMBP2	99	43.513	Ficedula_albicollis
ENSCSAVG00000006222	-	87	59.813	ENSFDAG00000005011	IGHMBP2	92	54.805	Fukomys_damarensis
ENSCSAVG00000006222	-	99	45.059	ENSFHEG00000021211	ighmbp2	99	45.050	Fundulus_heteroclitus
ENSCSAVG00000006222	-	99	44.766	ENSGMOG00000017553	ighmbp2	99	44.346	Gadus_morhua
ENSCSAVG00000006222	-	99	43.465	ENSGALG00000004328	IGHMBP2	99	44.444	Gallus_gallus
ENSCSAVG00000006222	-	99	42.965	ENSGAFG00000020770	ighmbp2	99	44.828	Gambusia_affinis
ENSCSAVG00000006222	-	90	54.962	ENSGACG00000005293	ighmbp2	99	44.179	Gasterosteus_aculeatus
ENSCSAVG00000006222	-	99	45.472	ENSGAGG00000020312	IGHMBP2	92	45.358	Gopherus_agassizii
ENSCSAVG00000006222	-	99	45.837	ENSGGOG00000012131	IGHMBP2	99	45.784	Gorilla_gorilla
ENSCSAVG00000006222	-	99	44.306	ENSHBUG00000018318	ighmbp2	99	45.879	Haplochromis_burtoni
ENSCSAVG00000006222	-	99	46.507	ENSHGLG00000006468	IGHMBP2	99	46.553	Heterocephalus_glaber_female
ENSCSAVG00000006222	-	99	46.607	ENSHGLG00100009290	IGHMBP2	99	46.607	Heterocephalus_glaber_male
ENSCSAVG00000006222	-	99	45.788	ENSHCOG00000018786	ighmbp2	99	45.748	Hippocampus_comes
ENSCSAVG00000006222	-	99	44.773	ENSIPUG00000023036	ighmbp2	99	44.848	Ictalurus_punctatus
ENSCSAVG00000006222	-	92	47.750	ENSSTOG00000003792	IGHMBP2	86	48.649	Ictidomys_tridecemlineatus
ENSCSAVG00000006222	-	99	43.714	ENSJJAG00000022964	Ighmbp2	99	44.347	Jaculus_jaculus
ENSCSAVG00000006222	-	99	45.726	ENSKMAG00000020284	ighmbp2	99	45.726	Kryptolebias_marmoratus
ENSCSAVG00000006222	-	99	44.721	ENSLBEG00000014501	ighmbp2	100	44.750	Labrus_bergylta
ENSCSAVG00000006222	-	99	43.053	ENSLACG00000018792	IGHMBP2	99	42.982	Latimeria_chalumnae
ENSCSAVG00000006222	-	100	43.199	ENSLOCG00000001512	ighmbp2	99	41.228	Lepisosteus_oculatus
ENSCSAVG00000006222	-	99	43.976	ENSLAFG00000022445	IGHMBP2	99	44.228	Loxodonta_africana
ENSCSAVG00000006222	-	99	45.850	ENSMFAG00000043909	IGHMBP2	99	45.607	Macaca_fascicularis
ENSCSAVG00000006222	-	99	44.334	ENSMNEG00000043511	IGHMBP2	99	44.126	Macaca_nemestrina
ENSCSAVG00000006222	-	99	45.717	ENSMLEG00000043529	IGHMBP2	99	45.508	Mandrillus_leucophaeus
ENSCSAVG00000006222	-	99	45.090	ENSMAMG00000005532	ighmbp2	99	45.345	Mastacembelus_armatus
ENSCSAVG00000006222	-	99	44.638	ENSMZEG00005000665	ighmbp2	99	45.680	Maylandia_zebra
ENSCSAVG00000006222	-	99	42.966	ENSMGAG00000002792	IGHMBP2	99	44.356	Meleagris_gallopavo
ENSCSAVG00000006222	-	99	45.382	ENSMAUG00000019893	Ighmbp2	99	45.382	Mesocricetus_auratus
ENSCSAVG00000006222	-	99	45.517	ENSMICG00000043944	IGHMBP2	99	50.209	Microcebus_murinus
ENSCSAVG00000006222	-	99	45.238	ENSMOCG00000018939	Ighmbp2	99	45.040	Microtus_ochrogaster
ENSCSAVG00000006222	-	100	44.665	ENSMMOG00000001234	ighmbp2	99	45.734	Mola_mola
ENSCSAVG00000006222	-	99	43.696	ENSMODG00000004040	IGHMBP2	89	42.816	Monodelphis_domestica
ENSCSAVG00000006222	-	99	43.806	ENSMALG00000006457	ighmbp2	99	43.905	Monopterus_albus
ENSCSAVG00000006222	-	99	45.751	MGP_CAROLIEiJ_G0022463	Ighmbp2	99	46.032	Mus_caroli
ENSCSAVG00000006222	-	99	46.016	ENSMUSG00000024831	Ighmbp2	99	45.714	Mus_musculus
ENSCSAVG00000006222	-	99	44.554	MGP_PahariEiJ_G0013960	Ighmbp2	99	45.527	Mus_pahari
ENSCSAVG00000006222	-	99	46.016	MGP_SPRETEiJ_G0014700	Ighmbp2	99	45.526	Mus_spretus
ENSCSAVG00000006222	-	99	43.452	ENSMPUG00000004439	IGHMBP2	99	45.152	Mustela_putorius_furo
ENSCSAVG00000006222	-	99	44.807	ENSNGAG00000006566	Ighmbp2	99	44.467	Nannospalax_galili
ENSCSAVG00000006222	-	94	44.343	ENSNBRG00000014911	ighmbp2	99	45.654	Neolamprologus_brichardi
ENSCSAVG00000006222	-	99	43.572	ENSNLEG00000006609	IGHMBP2	99	43.572	Nomascus_leucogenys
ENSCSAVG00000006222	-	79	45.714	ENSOPRG00000011904	-	86	45.714	Ochotona_princeps
ENSCSAVG00000006222	-	99	45.739	ENSODEG00000017354	IGHMBP2	99	45.570	Octodon_degus
ENSCSAVG00000006222	-	99	45.171	ENSONIG00000015506	ighmbp2	99	45.472	Oreochromis_niloticus
ENSCSAVG00000006222	-	99	45.281	ENSORLG00000006561	ighmbp2	99	45.500	Oryzias_latipes
ENSCSAVG00000006222	-	99	44.831	ENSORLG00020008462	ighmbp2	99	44.732	Oryzias_latipes_hni
ENSCSAVG00000006222	-	99	44.769	ENSORLG00015001563	ighmbp2	99	44.769	Oryzias_latipes_hsok
ENSCSAVG00000006222	-	99	43.965	ENSOMEG00000019296	ighmbp2	99	44.444	Oryzias_melastigma
ENSCSAVG00000006222	-	99	43.343	ENSOGAG00000011671	IGHMBP2	99	43.702	Otolemur_garnettii
ENSCSAVG00000006222	-	99	43.519	ENSOARG00000016959	IGHMBP2	99	42.974	Ovis_aries
ENSCSAVG00000006222	-	99	46.383	ENSPPAG00000027355	IGHMBP2	99	45.980	Pan_paniscus
ENSCSAVG00000006222	-	99	45.796	ENSPPRG00000024194	IGHMBP2	99	46.411	Panthera_pardus
ENSCSAVG00000006222	-	99	46.779	ENSPTRG00000003989	IGHMBP2	99	46.779	Pan_troglodytes
ENSCSAVG00000006222	-	99	42.729	ENSPANG00000023650	IGHMBP2	99	42.646	Papio_anubis
ENSCSAVG00000006222	-	99	48.571	ENSPKIG00000019306	ighmbp2	99	44.521	Paramormyrops_kingsleyae
ENSCSAVG00000006222	-	91	46.219	ENSPSIG00000015808	IGHMBP2	100	45.851	Pelodiscus_sinensis
ENSCSAVG00000006222	-	67	39.180	ENSPMGG00000016277	ighmbp2	84	40.492	Periophthalmus_magnuspinnatus
ENSCSAVG00000006222	-	99	45.419	ENSPEMG00000017775	Ighmbp2	99	45.464	Peromyscus_maniculatus_bairdii
ENSCSAVG00000006222	-	91	47.925	ENSPCIG00000011064	IGHMBP2	84	51.064	Phascolarctos_cinereus
ENSCSAVG00000006222	-	99	44.675	ENSPFOG00000010607	ighmbp2	99	45.015	Poecilia_formosa
ENSCSAVG00000006222	-	99	44.760	ENSPLAG00000003917	ighmbp2	99	44.946	Poecilia_latipinna
ENSCSAVG00000006222	-	99	44.259	ENSPMEG00000021063	ighmbp2	99	44.423	Poecilia_mexicana
ENSCSAVG00000006222	-	99	44.074	ENSPREG00000011223	ighmbp2	99	44.455	Poecilia_reticulata
ENSCSAVG00000006222	-	99	44.030	ENSPPYG00000002965	-	99	43.472	Pongo_abelii
ENSCSAVG00000006222	-	73	53.333	ENSPCAG00000003490	-	54	52.459	Procavia_capensis
ENSCSAVG00000006222	-	99	44.750	ENSPCOG00000018759	IGHMBP2	99	44.838	Propithecus_coquereli
ENSCSAVG00000006222	-	91	42.097	ENSPVAG00000012921	IGHMBP2	100	42.124	Pteropus_vampyrus
ENSCSAVG00000006222	-	99	44.317	ENSPNYG00000015003	ighmbp2	99	45.726	Pundamilia_nyererei
ENSCSAVG00000006222	-	99	45.196	ENSPNAG00000013815	ighmbp2	99	45.588	Pygocentrus_nattereri
ENSCSAVG00000006222	-	99	45.581	ENSRNOG00000013456	Ighmbp2	98	45.581	Rattus_norvegicus
ENSCSAVG00000006222	-	99	46.208	ENSRBIG00000044249	IGHMBP2	99	46.230	Rhinopithecus_bieti
ENSCSAVG00000006222	-	99	45.954	ENSRROG00000045646	IGHMBP2	99	46.032	Rhinopithecus_roxellana
ENSCSAVG00000006222	-	65	34.111	YKL017C	HCS1	99	34.111	Saccharomyces_cerevisiae
ENSCSAVG00000006222	-	99	43.211	ENSSBOG00000021342	IGHMBP2	99	44.246	Saimiri_boliviensis_boliviensis
ENSCSAVG00000006222	-	97	43.385	ENSSHAG00000001585	-	99	43.219	Sarcophilus_harrisii
ENSCSAVG00000006222	-	99	44.048	ENSSFOG00015016074	ighmbp2	90	44.048	Scleropages_formosus
ENSCSAVG00000006222	-	99	44.936	ENSSMAG00000013687	ighmbp2	99	44.543	Scophthalmus_maximus
ENSCSAVG00000006222	-	99	45.044	ENSSDUG00000013150	ighmbp2	99	44.851	Seriola_dumerili
ENSCSAVG00000006222	-	99	42.560	ENSSLDG00000023119	ighmbp2	99	44.643	Seriola_lalandi_dorsalis
ENSCSAVG00000006222	-	98	43.558	ENSSPUG00000008810	IGHMBP2	99	43.921	Sphenodon_punctatus
ENSCSAVG00000006222	-	99	41.902	ENSSPAG00000011541	ighmbp2	99	45.427	Stegastes_partitus
ENSCSAVG00000006222	-	99	44.290	ENSSSCG00000012878	IGHMBP2	99	44.036	Sus_scrofa
ENSCSAVG00000006222	-	99	42.792	ENSTGUG00000006705	-	99	43.939	Taeniopygia_guttata
ENSCSAVG00000006222	-	99	45.339	ENSTRUG00000003491	ighmbp2	100	45.706	Takifugu_rubripes
ENSCSAVG00000006222	-	99	46.116	ENSTNIG00000016069	ighmbp2	99	46.509	Tetraodon_nigroviridis
ENSCSAVG00000006222	-	86	44.413	ENSTBEG00000017260	IGHMBP2	93	44.413	Tupaia_belangeri
ENSCSAVG00000006222	-	96	43.231	ENSTTRG00000013636	IGHMBP2	88	50.847	Tursiops_truncatus
ENSCSAVG00000006222	-	99	46.400	ENSUAMG00000024817	IGHMBP2	99	46.471	Ursus_americanus
ENSCSAVG00000006222	-	99	43.134	ENSUMAG00000018347	IGHMBP2	97	45.483	Ursus_maritimus
ENSCSAVG00000006222	-	99	45.196	ENSVVUG00000004811	IGHMBP2	99	45.171	Vulpes_vulpes
ENSCSAVG00000006222	-	100	43.158	ENSXETG00000031258	IGHMBP2	100	44.269	Xenopus_tropicalis
ENSCSAVG00000006222	-	99	45.410	ENSXCOG00000003758	ighmbp2	99	45.751	Xiphophorus_couchianus
ENSCSAVG00000006222	-	99	45.292	ENSXMAG00000003705	ighmbp2	99	45.437	Xiphophorus_maculatus