EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000006341 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 5436 bases
Position: chrreftig_44:782050-787485
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000010812	ResIII	PF04851.15	8.2e-07	1	1
ENSCSAVP00000010812	DEAD	PF00270.29	1.5e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000010943	-	1309	-	ENSCSAVP00000010812	374 (aa)	-	H2YZQ0

Gene Model

Click here to download ENSCSAVG00000006341's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000006341's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000006341	-	89	30.435	ENSCSAVG00000011566	-	70	30.435
ENSCSAVG00000006341	-	82	32.087	ENSCSAVG00000002353	-	70	30.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000006341	-	93	37.401	ENSG00000182810	DDX28	67	38.992	Homo_sapiens
ENSCSAVG00000006341	-	94	36.813	ENSAPOG00000000991	ddx28	63	37.088	Acanthochromis_polyacanthus
ENSCSAVG00000006341	-	94	38.133	ENSAMEG00000019426	DDX28	69	39.733	Ailuropoda_melanoleuca
ENSCSAVG00000006341	-	95	36.927	ENSACIG00000021615	ddx28	65	36.898	Amphilophus_citrinellus
ENSCSAVG00000006341	-	94	37.363	ENSAOCG00000004610	ddx28	63	37.637	Amphiprion_ocellaris
ENSCSAVG00000006341	-	94	37.363	ENSAPEG00000002143	ddx28	63	37.637	Amphiprion_percula
ENSCSAVG00000006341	-	98	35.958	ENSATEG00000018691	ddx28	66	35.696	Anabas_testudineus
ENSCSAVG00000006341	-	94	37.027	ENSACAG00000009755	DDX28	67	37.568	Anolis_carolinensis
ENSCSAVG00000006341	-	94	35.989	ENSACLG00000012984	ddx28	63	35.989	Astatotilapia_calliptera
ENSCSAVG00000006341	-	94	37.027	ENSAMXG00000005878	ddx28	64	36.757	Astyanax_mexicanus
ENSCSAVG00000006341	-	94	38.933	ENSBTAG00000004290	DDX28	67	38.933	Bos_taurus
ENSCSAVG00000006341	-	93	37.838	ENSCAFG00000020327	DDX28	69	39.189	Canis_familiaris
ENSCSAVG00000006341	-	93	37.838	ENSCAFG00020019785	DDX28	69	39.189	Canis_lupus_dingo
ENSCSAVG00000006341	-	94	39.084	ENSCHIG00000009658	DDX28	67	39.084	Capra_hircus
ENSCSAVG00000006341	-	94	38.378	ENSCPOG00000013746	DDX28	68	38.378	Cavia_porcellus
ENSCSAVG00000006341	-	94	39.623	ENSCSAG00000018472	DDX28	67	39.623	Chlorocebus_sabaeus
ENSCSAVG00000006341	-	98	37.795	ENSCPBG00000012105	DDX28	75	37.795	Chrysemys_picta_bellii
ENSCSAVG00000006341	-	91	39.402	ENSCGRG00001024412	Ddx28	68	39.402	Cricetulus_griseus_chok1gshd
ENSCSAVG00000006341	-	94	37.912	ENSCSEG00000011651	ddx28	63	37.912	Cynoglossus_semilaevis
ENSCSAVG00000006341	-	94	35.890	ENSCVAG00000004044	ddx28	64	36.164	Cyprinodon_variegatus
ENSCSAVG00000006341	-	94	39.394	ENSDARG00000060411	ddx28	64	39.669	Danio_rerio
ENSCSAVG00000006341	-	93	38.859	ENSDNOG00000033593	DDX28	98	39.946	Dasypus_novemcinctus
ENSCSAVG00000006341	-	94	39.142	ENSDORG00000028868	Ddx28	68	39.142	Dipodomys_ordii
ENSCSAVG00000006341	-	94	36.740	FBgn0086130	Dbp21E2	66	36.740	Drosophila_melanogaster
ENSCSAVG00000006341	-	94	38.235	ENSETEG00000001062	-	68	38.235	Echinops_telfairi
ENSCSAVG00000006341	-	69	46.032	ENSEBUG00000004791	ddx28	56	46.032	Eptatretus_burgeri
ENSCSAVG00000006341	-	94	38.172	ENSEASG00005020387	DDX28	68	40.054	Equus_asinus_asinus
ENSCSAVG00000006341	-	94	38.710	ENSECAG00000006451	DDX28	68	40.591	Equus_caballus
ENSCSAVG00000006341	-	61	37.751	ENSEEUG00000005017	DDX28	57	37.751	Erinaceus_europaeus
ENSCSAVG00000006341	-	94	36.512	ENSELUG00000005302	ddx28	69	36.785	Esox_lucius
ENSCSAVG00000006341	-	94	39.247	ENSFCAG00000012858	DDX28	68	39.247	Felis_catus
ENSCSAVG00000006341	-	94	35.792	ENSFHEG00000012573	ddx28	65	35.792	Fundulus_heteroclitus
ENSCSAVG00000006341	-	94	36.413	ENSGMOG00000017045	ddx28	69	36.413	Gadus_morhua
ENSCSAVG00000006341	-	94	35.561	ENSGALG00000048700	DDX28	64	35.561	Gallus_gallus
ENSCSAVG00000006341	-	94	35.890	ENSGAFG00000009249	ddx28	64	36.164	Gambusia_affinis
ENSCSAVG00000006341	-	94	37.602	ENSGACG00000016367	ddx28	67	37.602	Gasterosteus_aculeatus
ENSCSAVG00000006341	-	81	35.127	ENSGAGG00000004565	DDX28	69	35.127	Gopherus_agassizii
ENSCSAVG00000006341	-	94	37.203	ENSGGOG00000001220	DDX28	68	38.786	Gorilla_gorilla
ENSCSAVG00000006341	-	94	37.363	ENSHBUG00000001016	ddx28	64	37.637	Haplochromis_burtoni
ENSCSAVG00000006341	-	94	35.215	ENSHCOG00000017590	ddx28	65	35.215	Hippocampus_comes
ENSCSAVG00000006341	-	94	38.187	ENSIPUG00000017350	Ddx28	63	38.462	Ictalurus_punctatus
ENSCSAVG00000006341	-	94	37.903	ENSSTOG00000002064	DDX28	68	37.903	Ictidomys_tridecemlineatus
ENSCSAVG00000006341	-	93	37.297	ENSJJAG00000012460	-	67	38.649	Jaculus_jaculus
ENSCSAVG00000006341	-	94	36.438	ENSKMAG00000018183	ddx28	64	36.438	Kryptolebias_marmoratus
ENSCSAVG00000006341	-	94	36.885	ENSLBEG00000006072	ddx28	65	37.158	Labrus_bergylta
ENSCSAVG00000006341	-	94	37.534	ENSLACG00000005578	DDX28	63	37.534	Latimeria_chalumnae
ENSCSAVG00000006341	-	94	37.875	ENSLOCG00000017604	ddx28	64	38.147	Lepisosteus_oculatus
ENSCSAVG00000006341	-	94	37.968	ENSLAFG00000031239	DDX28	68	38.235	Loxodonta_africana
ENSCSAVG00000006341	-	94	39.459	ENSMMUG00000010836	DDX28	67	39.459	Macaca_mulatta
ENSCSAVG00000006341	-	94	36.438	ENSMAMG00000020220	ddx28	64	36.438	Mastacembelus_armatus
ENSCSAVG00000006341	-	94	37.912	ENSMZEG00005009292	ddx28	64	37.912	Maylandia_zebra
ENSCSAVG00000006341	-	94	33.702	ENSMICG00000012346	-	63	33.702	Microcebus_murinus
ENSCSAVG00000006341	-	94	40.323	ENSMOCG00000009815	Ddx28	68	40.323	Microtus_ochrogaster
ENSCSAVG00000006341	-	94	36.986	ENSMMOG00000000270	ddx28	65	37.088	Mola_mola
ENSCSAVG00000006341	-	94	39.947	ENSMODG00000005303	DDX28	66	39.947	Monodelphis_domestica
ENSCSAVG00000006341	-	94	36.066	ENSMALG00000008864	ddx28	64	36.339	Monopterus_albus
ENSCSAVG00000006341	-	94	40.591	MGP_CAROLIEiJ_G0031510	Ddx28	68	40.591	Mus_caroli
ENSCSAVG00000006341	-	94	40.162	ENSMUSG00000045538	Ddx28	67	39.788	Mus_musculus
ENSCSAVG00000006341	-	94	40.323	MGP_PahariEiJ_G0023110	Ddx28	68	40.323	Mus_pahari
ENSCSAVG00000006341	-	94	40.053	MGP_SPRETEiJ_G0032628	Ddx28	67	40.053	Mus_spretus
ENSCSAVG00000006341	-	89	35.211	ENSMPUG00000006915	DDX28	86	36.901	Mustela_putorius_furo
ENSCSAVG00000006341	-	93	40.650	ENSMLUG00000005899	DDX28	67	41.192	Myotis_lucifugus
ENSCSAVG00000006341	-	94	39.314	ENSNGAG00000015762	Ddx28	68	39.314	Nannospalax_galili
ENSCSAVG00000006341	-	94	37.912	ENSNBRG00000001337	ddx28	65	38.187	Neolamprologus_brichardi
ENSCSAVG00000006341	-	94	37.912	ENSONIG00000020597	ddx28	64	37.912	Oreochromis_niloticus
ENSCSAVG00000006341	-	72	38.989	ENSOANG00000003551	-	97	38.989	Ornithorhynchus_anatinus
ENSCSAVG00000006341	-	94	37.466	ENSOCUG00000023074	DDX28	67	37.466	Oryctolagus_cuniculus
ENSCSAVG00000006341	-	94	36.339	ENSORLG00000011968	ddx28	65	36.339	Oryzias_latipes
ENSCSAVG00000006341	-	94	36.339	ENSORLG00020001951	ddx28	66	36.339	Oryzias_latipes_hni
ENSCSAVG00000006341	-	94	36.066	ENSORLG00015023030	ddx28	66	36.066	Oryzias_latipes_hsok
ENSCSAVG00000006341	-	94	36.066	ENSOMEG00000012445	ddx28	64	36.066	Oryzias_melastigma
ENSCSAVG00000006341	-	94	40.591	ENSOGAG00000016895	DDX28	67	40.591	Otolemur_garnettii
ENSCSAVG00000006341	-	94	36.388	ENSOARG00000003313	DDX28	81	36.388	Ovis_aries
ENSCSAVG00000006341	-	94	36.412	ENSPPAG00000036971	DDX28	66	36.412	Pan_paniscus
ENSCSAVG00000006341	-	94	39.516	ENSPPRG00000018322	DDX28	68	39.516	Panthera_pardus
ENSCSAVG00000006341	-	94	39.516	ENSPTIG00000006444	DDX28	69	39.516	Panthera_tigris_altaica
ENSCSAVG00000006341	-	94	39.050	ENSPTRG00000008258	DDX28	68	39.050	Pan_troglodytes
ENSCSAVG00000006341	-	95	35.695	ENSPKIG00000021200	ddx28	67	35.695	Paramormyrops_kingsleyae
ENSCSAVG00000006341	-	74	36.691	ENSPSIG00000001127	DDX28	93	36.691	Pelodiscus_sinensis
ENSCSAVG00000006341	-	93	36.212	ENSPMGG00000007908	ddx28	63	36.212	Periophthalmus_magnuspinnatus
ENSCSAVG00000006341	-	94	40.107	ENSPEMG00000003395	Ddx28	68	39.842	Peromyscus_maniculatus_bairdii
ENSCSAVG00000006341	-	72	38.182	ENSPMAG00000006983	DDX28	92	38.182	Petromyzon_marinus
ENSCSAVG00000006341	-	97	36.340	ENSPFOG00000020952	ddx28	65	36.340	Poecilia_formosa
ENSCSAVG00000006341	-	94	36.986	ENSPFOG00000020838	DDX28	64	36.986	Poecilia_formosa
ENSCSAVG00000006341	-	97	35.450	ENSPLAG00000016292	ddx28	65	35.450	Poecilia_latipinna
ENSCSAVG00000006341	-	94	36.986	ENSPMEG00000011311	ddx28	63	36.986	Poecilia_mexicana
ENSCSAVG00000006341	-	97	36.074	ENSPREG00000002899	ddx28	65	36.074	Poecilia_reticulata
ENSCSAVG00000006341	-	94	36.675	ENSPPYG00000007481	DDX28	68	38.259	Pongo_abelii
ENSCSAVG00000006341	-	94	38.814	ENSPCOG00000024632	DDX28	67	39.096	Propithecus_coquereli
ENSCSAVG00000006341	-	94	37.912	ENSPNYG00000018804	ddx28	64	38.187	Pundamilia_nyererei
ENSCSAVG00000006341	-	94	38.630	ENSPNAG00000014597	ddx28	66	38.630	Pygocentrus_nattereri
ENSCSAVG00000006341	-	94	39.247	ENSRNOG00000019817	Ddx28	68	39.247	Rattus_norvegicus
ENSCSAVG00000006341	-	95	33.693	ENSSFOG00015010181	ddx28	66	34.232	Scleropages_formosus
ENSCSAVG00000006341	-	94	36.314	ENSSMAG00000006831	ddx28	67	36.314	Scophthalmus_maximus
ENSCSAVG00000006341	-	98	36.883	ENSSDUG00000003257	ddx28	66	36.623	Seriola_dumerili
ENSCSAVG00000006341	-	98	36.883	ENSSLDG00000004513	ddx28	66	36.364	Seriola_lalandi_dorsalis
ENSCSAVG00000006341	-	94	39.510	ENSSARG00000014169	DDX28	67	39.510	Sorex_araneus
ENSCSAVG00000006341	-	94	36.957	ENSSPAG00000000988	ddx28	64	37.228	Stegastes_partitus
ENSCSAVG00000006341	-	94	40.054	ENSSSCG00000026038	DDX28	68	40.054	Sus_scrofa
ENSCSAVG00000006341	-	94	36.813	ENSTRUG00000007815	ddx28	66	36.813	Takifugu_rubripes
ENSCSAVG00000006341	-	94	36.438	ENSTNIG00000011352	ddx28	73	36.438	Tetraodon_nigroviridis
ENSCSAVG00000006341	-	94	38.400	ENSUAMG00000016116	DDX28	68	40.000	Ursus_americanus
ENSCSAVG00000006341	-	94	38.133	ENSUMAG00000019200	DDX28	75	39.733	Ursus_maritimus
ENSCSAVG00000006341	-	69	33.692	ENSVVUG00000012876	DDX28	54	35.484	Vulpes_vulpes
ENSCSAVG00000006341	-	97	34.748	ENSXETG00000005435	ddx28	73	34.748	Xenopus_tropicalis
ENSCSAVG00000006341	-	97	35.714	ENSXCOG00000012364	ddx28	66	35.714	Xiphophorus_couchianus
ENSCSAVG00000006341	-	94	36.712	ENSXMAG00000019603	ddx28	65	36.712	Xiphophorus_maculatus