EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000006533 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 39682 bases
Position: chrreftig_20:706895-746576
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000011178	UPF1_Zn_bind	PF09416.10	1.4e-73	1	1
ENSCSAVP00000011178	ResIII	PF04851.15	2.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000011309	-	3727	-	ENSCSAVP00000011178	1093 (aa)	-	H2Z0R6

Gene Model

Click here to download ENSCSAVG00000006533's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000006533's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000006533	-	99	71.972	ENSG00000005007	UPF1	99	71.972	Homo_sapiens
ENSCSAVG00000006533	-	99	73.333	ENSAPOG00000023773	upf1	99	73.153	Acanthochromis_polyacanthus
ENSCSAVG00000006533	-	99	73.495	ENSAPOG00000010916	-	99	73.226	Acanthochromis_polyacanthus
ENSCSAVG00000006533	-	99	71.441	ENSAMEG00000011474	UPF1	99	71.353	Ailuropoda_melanoleuca
ENSCSAVG00000006533	-	99	72.516	ENSACIG00000019949	upf1	99	72.907	Amphilophus_citrinellus
ENSCSAVG00000006533	-	93	74.419	ENSACIG00000010985	-	99	74.516	Amphilophus_citrinellus
ENSCSAVG00000006533	-	99	72.760	ENSAOCG00000018519	upf1	99	72.579	Amphiprion_ocellaris
ENSCSAVG00000006533	-	99	73.585	ENSAOCG00000006352	-	99	73.226	Amphiprion_ocellaris
ENSCSAVG00000006533	-	99	72.760	ENSAPEG00000016344	upf1	99	72.579	Amphiprion_percula
ENSCSAVG00000006533	-	99	73.585	ENSAPEG00000006292	-	99	73.226	Amphiprion_percula
ENSCSAVG00000006533	-	99	73.405	ENSATEG00000016606	-	99	73.136	Anabas_testudineus
ENSCSAVG00000006533	-	99	71.454	ENSATEG00000017867	upf1	99	71.745	Anabas_testudineus
ENSCSAVG00000006533	-	94	73.605	ENSAPLG00000009175	UPF1	99	73.321	Anas_platyrhynchos
ENSCSAVG00000006533	-	94	72.375	ENSANAG00000024107	UPF1	94	72.375	Aotus_nancymaae
ENSCSAVG00000006533	-	99	73.112	ENSACLG00000007181	upf1	99	73.063	Astatotilapia_calliptera
ENSCSAVG00000006533	-	99	73.405	ENSACLG00000022630	-	99	73.136	Astatotilapia_calliptera
ENSCSAVG00000006533	-	99	71.928	ENSAMXG00000042187	upf1	99	72.392	Astyanax_mexicanus
ENSCSAVG00000006533	-	99	71.404	ENSBTAG00000020922	UPF1	99	71.404	Bos_taurus
ENSCSAVG00000006533	-	78	54.114	WBGene00004880	smg-2	79	54.114	Caenorhabditis_elegans
ENSCSAVG00000006533	-	99	71.278	ENSCJAG00000019627	UPF1	99	71.278	Callithrix_jacchus
ENSCSAVG00000006533	-	99	71.216	ENSCAFG00000014578	UPF1	99	71.129	Canis_familiaris
ENSCSAVG00000006533	-	99	71.908	ENSCAFG00020012347	UPF1	99	71.820	Canis_lupus_dingo
ENSCSAVG00000006533	-	99	72.099	ENSCHIG00000011018	UPF1	99	72.099	Capra_hircus
ENSCSAVG00000006533	-	94	73.321	ENSTSYG00000008877	UPF1	97	73.321	Carlito_syrichta
ENSCSAVG00000006533	-	95	72.719	ENSCAPG00000005758	UPF1	95	73.510	Cavia_aperea
ENSCSAVG00000006533	-	99	72.460	ENSCPOG00000025463	UPF1	99	72.316	Cavia_porcellus
ENSCSAVG00000006533	-	99	71.972	ENSCCAG00000032175	UPF1	99	71.972	Cebus_capucinus
ENSCSAVG00000006533	-	94	73.415	ENSCATG00000040306	UPF1	97	73.415	Cercocebus_atys
ENSCSAVG00000006533	-	94	73.415	ENSCLAG00000004037	UPF1	99	73.415	Chinchilla_lanigera
ENSCSAVG00000006533	-	99	71.972	ENSCSAG00000005276	UPF1	99	71.972	Chlorocebus_sabaeus
ENSCSAVG00000006533	-	99	72.380	ENSCPBG00000012513	UPF1	99	72.114	Chrysemys_picta_bellii
ENSCSAVG00000006533	-	78	95.294	ENSCING00000021399	-	99	95.294	Ciona_intestinalis
ENSCSAVG00000006533	-	94	73.415	ENSCANG00000029819	UPF1	97	73.415	Colobus_angolensis_palliatus
ENSCSAVG00000006533	-	99	72.291	ENSCGRG00001021067	Upf1	99	72.291	Cricetulus_griseus_chok1gshd
ENSCSAVG00000006533	-	94	73.415	ENSCGRG00000013480	Upf1	98	73.415	Cricetulus_griseus_crigri
ENSCSAVG00000006533	-	99	73.514	ENSCSEG00000016159	-	99	73.514	Cynoglossus_semilaevis
ENSCSAVG00000006533	-	99	69.820	ENSCSEG00000017239	upf1	99	69.538	Cynoglossus_semilaevis
ENSCSAVG00000006533	-	99	72.735	ENSCVAG00000010561	upf1	99	72.662	Cyprinodon_variegatus
ENSCSAVG00000006533	-	99	72.457	ENSDARG00000016302	upf1	99	72.547	Danio_rerio
ENSCSAVG00000006533	-	94	72.023	ENSDORG00000009984	Upf1	95	72.023	Dipodomys_ordii
ENSCSAVG00000006533	-	85	67.340	FBgn0030354	Upf1	79	67.234	Drosophila_melanogaster
ENSCSAVG00000006533	-	54	76.254	ENSEBUG00000010069	upf1	95	76.254	Eptatretus_burgeri
ENSCSAVG00000006533	-	99	72.099	ENSEASG00005006549	UPF1	99	72.099	Equus_asinus_asinus
ENSCSAVG00000006533	-	99	72.099	ENSECAG00000010639	UPF1	99	72.099	Equus_caballus
ENSCSAVG00000006533	-	99	71.710	ENSELUG00000020917	upf1	99	71.825	Esox_lucius
ENSCSAVG00000006533	-	99	71.825	ENSELUG00000012916	-	99	71.939	Esox_lucius
ENSCSAVG00000006533	-	99	71.304	ENSFCAG00000009757	UPF1	99	71.216	Felis_catus
ENSCSAVG00000006533	-	95	73.754	ENSFALG00000009312	UPF1	95	74.095	Ficedula_albicollis
ENSCSAVG00000006533	-	94	73.321	ENSFDAG00000014816	UPF1	99	73.321	Fukomys_damarensis
ENSCSAVG00000006533	-	99	71.312	ENSFHEG00000006428	upf1	99	71.312	Fundulus_heteroclitus
ENSCSAVG00000006533	-	85	76.215	ENSFHEG00000016276	-	95	76.215	Fundulus_heteroclitus
ENSCSAVG00000006533	-	99	71.733	ENSGMOG00000007541	upf1	99	71.569	Gadus_morhua
ENSCSAVG00000006533	-	99	72.035	ENSGALG00000003220	UPF1	99	71.770	Gallus_gallus
ENSCSAVG00000006533	-	99	73.129	ENSGAFG00000004831	upf1	99	73.129	Gambusia_affinis
ENSCSAVG00000006533	-	62	78.261	ENSGAFG00000015443	-	85	78.261	Gambusia_affinis
ENSCSAVG00000006533	-	99	72.257	ENSGAGG00000022217	UPF1	99	72.079	Gopherus_agassizii
ENSCSAVG00000006533	-	94	74.187	ENSGGOG00000002608	UPF1	98	74.187	Gorilla_gorilla
ENSCSAVG00000006533	-	87	77.681	ENSHBUG00000008939	upf1	95	77.462	Haplochromis_burtoni
ENSCSAVG00000006533	-	89	68.293	ENSHBUG00000014694	upf1	99	68.293	Haplochromis_burtoni
ENSCSAVG00000006533	-	99	71.016	ENSHGLG00000010900	UPF1	99	71.016	Heterocephalus_glaber_female
ENSCSAVG00000006533	-	94	73.479	ENSHGLG00100005904	UPF1	96	73.479	Heterocephalus_glaber_male
ENSCSAVG00000006533	-	99	73.291	ENSHCOG00000008918	upf1	99	73.896	Hippocampus_comes
ENSCSAVG00000006533	-	99	72.361	ENSIPUG00000005108	UPF1	99	72.556	Ictalurus_punctatus
ENSCSAVG00000006533	-	99	71.972	ENSSTOG00000009196	UPF1	99	71.972	Ictidomys_tridecemlineatus
ENSCSAVG00000006533	-	99	71.718	ENSJJAG00000023151	Upf1	99	71.718	Jaculus_jaculus
ENSCSAVG00000006533	-	99	73.226	ENSKMAG00000004962	upf1	99	72.956	Kryptolebias_marmoratus
ENSCSAVG00000006533	-	99	73.232	ENSLBEG00000027848	-	99	72.980	Labrus_bergylta
ENSCSAVG00000006533	-	99	70.473	ENSLBEG00000014862	upf1	99	71.708	Labrus_bergylta
ENSCSAVG00000006533	-	63	72.663	ENSLACG00000008482	UPF1	100	72.663	Latimeria_chalumnae
ENSCSAVG00000006533	-	99	72.735	ENSLOCG00000002072	upf1	99	72.956	Lepisosteus_oculatus
ENSCSAVG00000006533	-	99	71.341	ENSLAFG00000014963	UPF1	99	71.253	Loxodonta_africana
ENSCSAVG00000006533	-	99	71.781	ENSMFAG00000037748	UPF1	99	71.605	Macaca_fascicularis
ENSCSAVG00000006533	-	99	71.592	ENSMMUG00000023286	UPF1	99	71.592	Macaca_mulatta
ENSCSAVG00000006533	-	99	71.781	ENSMNEG00000000046	UPF1	99	71.605	Macaca_nemestrina
ENSCSAVG00000006533	-	94	73.415	ENSMLEG00000028404	UPF1	99	73.415	Mandrillus_leucophaeus
ENSCSAVG00000006533	-	99	71.555	ENSMAMG00000006229	upf1	99	72.011	Mastacembelus_armatus
ENSCSAVG00000006533	-	99	72.401	ENSMAMG00000006231	-	99	72.711	Mastacembelus_armatus
ENSCSAVG00000006533	-	99	73.405	ENSMZEG00005016386	-	99	73.136	Maylandia_zebra
ENSCSAVG00000006533	-	99	72.202	ENSMZEG00005003489	upf1	99	72.000	Maylandia_zebra
ENSCSAVG00000006533	-	94	73.157	ENSMGAG00000004745	UPF1	99	72.873	Meleagris_gallopavo
ENSCSAVG00000006533	-	94	73.415	ENSMAUG00000011398	Upf1	94	73.415	Mesocricetus_auratus
ENSCSAVG00000006533	-	99	71.972	ENSMICG00000001659	UPF1	99	71.972	Microcebus_murinus
ENSCSAVG00000006533	-	99	71.592	ENSMOCG00000005699	Upf1	99	71.680	Microtus_ochrogaster
ENSCSAVG00000006533	-	99	72.464	ENSMMOG00000007881	upf1	99	72.736	Mola_mola
ENSCSAVG00000006533	-	94	73.967	ENSMMOG00000007537	-	99	74.398	Mola_mola
ENSCSAVG00000006533	-	99	70.681	ENSMODG00000003689	UPF1	99	70.681	Monodelphis_domestica
ENSCSAVG00000006533	-	99	72.679	ENSMALG00000018100	-	99	72.337	Monopterus_albus
ENSCSAVG00000006533	-	99	73.551	ENSMALG00000000144	upf1	99	73.279	Monopterus_albus
ENSCSAVG00000006533	-	99	72.202	MGP_CAROLIEiJ_G0031142	Upf1	99	72.202	Mus_caroli
ENSCSAVG00000006533	-	99	72.202	ENSMUSG00000058301	Upf1	99	72.202	Mus_musculus
ENSCSAVG00000006533	-	99	72.202	MGP_PahariEiJ_G0021607	Upf1	99	72.202	Mus_pahari
ENSCSAVG00000006533	-	99	72.202	MGP_SPRETEiJ_G0032260	Upf1	99	72.202	Mus_spretus
ENSCSAVG00000006533	-	99	71.908	ENSMPUG00000015516	UPF1	99	71.820	Mustela_putorius_furo
ENSCSAVG00000006533	-	99	71.922	ENSMLUG00000012122	UPF1	99	71.833	Myotis_lucifugus
ENSCSAVG00000006533	-	99	71.404	ENSNGAG00000024107	Upf1	99	71.491	Nannospalax_galili
ENSCSAVG00000006533	-	99	70.711	ENSNBRG00000022069	-	99	73.578	Neolamprologus_brichardi
ENSCSAVG00000006533	-	99	71.429	ENSNBRG00000000670	upf1	99	71.377	Neolamprologus_brichardi
ENSCSAVG00000006533	-	94	68.461	ENSNLEG00000006062	UPF1	99	68.461	Nomascus_leucogenys
ENSCSAVG00000006533	-	83	65.637	ENSMEUG00000014146	-	83	65.637	Notamacropus_eugenii
ENSCSAVG00000006533	-	94	69.761	ENSOPRG00000014018	UPF1	99	69.665	Ochotona_princeps
ENSCSAVG00000006533	-	99	71.950	ENSODEG00000012426	UPF1	99	71.950	Octodon_degus
ENSCSAVG00000006533	-	99	72.202	ENSONIG00000010452	upf1	99	72.089	Oreochromis_niloticus
ENSCSAVG00000006533	-	99	73.405	ENSONIG00000012729	-	99	73.136	Oreochromis_niloticus
ENSCSAVG00000006533	-	99	71.328	ENSOANG00000004568	UPF1	99	71.328	Ornithorhynchus_anatinus
ENSCSAVG00000006533	-	99	72.556	ENSORLG00000008453	upf1	99	72.287	Oryzias_latipes
ENSCSAVG00000006533	-	99	72.491	ENSORLG00020014758	upf1	99	72.312	Oryzias_latipes_hni
ENSCSAVG00000006533	-	99	72.491	ENSORLG00015010165	upf1	99	72.312	Oryzias_latipes_hsok
ENSCSAVG00000006533	-	99	72.825	ENSOMEG00000003665	upf1	99	72.646	Oryzias_melastigma
ENSCSAVG00000006533	-	99	71.972	ENSOGAG00000012866	UPF1	99	71.972	Otolemur_garnettii
ENSCSAVG00000006533	-	96	70.856	ENSOARG00000010739	UPF1	100	70.856	Ovis_aries
ENSCSAVG00000006533	-	94	73.415	ENSPPAG00000043884	UPF1	95	73.415	Pan_paniscus
ENSCSAVG00000006533	-	99	71.304	ENSPPRG00000023470	UPF1	99	71.216	Panthera_pardus
ENSCSAVG00000006533	-	94	74.352	ENSPTIG00000010159	UPF1	99	74.352	Panthera_tigris_altaica
ENSCSAVG00000006533	-	99	71.781	ENSPTRG00000010721	UPF1	99	71.605	Pan_troglodytes
ENSCSAVG00000006533	-	99	71.781	ENSPANG00000008847	UPF1	99	71.605	Papio_anubis
ENSCSAVG00000006533	-	92	74.263	ENSPKIG00000006069	upf1	97	74.165	Paramormyrops_kingsleyae
ENSCSAVG00000006533	-	69	72.892	ENSPSIG00000009491	UPF1	100	72.892	Pelodiscus_sinensis
ENSCSAVG00000006533	-	99	71.903	ENSPMGG00000017327	upf1	99	72.018	Periophthalmus_magnuspinnatus
ENSCSAVG00000006533	-	99	71.592	ENSPEMG00000001085	Upf1	99	71.592	Peromyscus_maniculatus_bairdii
ENSCSAVG00000006533	-	99	72.321	ENSPMAG00000001206	upf1	99	72.029	Petromyzon_marinus
ENSCSAVG00000006533	-	99	71.883	ENSPCIG00000006156	UPF1	99	71.883	Phascolarctos_cinereus
ENSCSAVG00000006533	-	99	71.964	ENSPLAG00000018155	-	99	71.467	Poecilia_latipinna
ENSCSAVG00000006533	-	99	73.129	ENSPLAG00000016232	-	99	73.129	Poecilia_latipinna
ENSCSAVG00000006533	-	99	72.637	ENSPMEG00000011443	-	99	72.137	Poecilia_mexicana
ENSCSAVG00000006533	-	99	73.063	ENSPMEG00000016319	-	99	73.063	Poecilia_mexicana
ENSCSAVG00000006533	-	99	72.217	ENSPREG00000009940	upf1	99	71.658	Poecilia_reticulata
ENSCSAVG00000006533	-	99	73.129	ENSPREG00000011247	-	99	73.219	Poecilia_reticulata
ENSCSAVG00000006533	-	99	68.426	ENSPPYG00000009752	UPF1	99	68.426	Pongo_abelii
ENSCSAVG00000006533	-	70	89.226	ENSPCAG00000012962	UPF1	68	89.226	Procavia_capensis
ENSCSAVG00000006533	-	99	71.655	ENSPCOG00000023813	UPF1	99	71.743	Propithecus_coquereli
ENSCSAVG00000006533	-	68	77.291	ENSPVAG00000003183	UPF1	68	77.291	Pteropus_vampyrus
ENSCSAVG00000006533	-	99	73.405	ENSPNYG00000016731	-	99	73.136	Pundamilia_nyererei
ENSCSAVG00000006533	-	99	72.202	ENSPNYG00000003694	upf1	99	72.000	Pundamilia_nyererei
ENSCSAVG00000006533	-	99	72.133	ENSPNAG00000025614	upf1	99	72.482	Pygocentrus_nattereri
ENSCSAVG00000006533	-	99	72.202	ENSRNOG00000020134	Upf1	99	72.202	Rattus_norvegicus
ENSCSAVG00000006533	-	94	71.618	ENSRBIG00000013894	UPF1	98	74.351	Rhinopithecus_bieti
ENSCSAVG00000006533	-	94	73.415	ENSRROG00000040935	UPF1	98	74.351	Rhinopithecus_roxellana
ENSCSAVG00000006533	-	71	56.538	YMR080C	NAM7	80	56.483	Saccharomyces_cerevisiae
ENSCSAVG00000006533	-	94	73.415	ENSSBOG00000023632	UPF1	96	73.415	Saimiri_boliviensis_boliviensis
ENSCSAVG00000006533	-	94	73.088	ENSSHAG00000010499	UPF1	99	73.088	Sarcophilus_harrisii
ENSCSAVG00000006533	-	99	72.801	ENSSFOG00015021095	upf1	99	73.971	Scleropages_formosus
ENSCSAVG00000006533	-	99	73.339	ENSSMAG00000021018	-	99	73.160	Scophthalmus_maximus
ENSCSAVG00000006533	-	99	71.353	ENSSMAG00000005055	upf1	99	71.695	Scophthalmus_maximus
ENSCSAVG00000006533	-	99	73.339	ENSSDUG00000009629	-	99	73.070	Seriola_dumerili
ENSCSAVG00000006533	-	99	70.578	ENSSDUG00000013320	upf1	99	71.479	Seriola_dumerili
ENSCSAVG00000006533	-	99	72.103	ENSSLDG00000020868	upf1	99	72.386	Seriola_lalandi_dorsalis
ENSCSAVG00000006533	-	99	73.339	ENSSLDG00000006878	-	99	73.070	Seriola_lalandi_dorsalis
ENSCSAVG00000006533	-	99	72.371	ENSSPUG00000010538	UPF1	99	72.014	Sphenodon_punctatus
ENSCSAVG00000006533	-	99	70.646	ENSSPAG00000000003	upf1	99	70.657	Stegastes_partitus
ENSCSAVG00000006533	-	99	73.651	ENSSPAG00000011521	-	99	73.315	Stegastes_partitus
ENSCSAVG00000006533	-	99	72.099	ENSSSCG00000039301	UPF1	99	74.187	Sus_scrofa
ENSCSAVG00000006533	-	82	69.141	ENSTGUG00000001057	UPF1	99	74.521	Taeniopygia_guttata
ENSCSAVG00000006533	-	99	72.939	ENSTRUG00000005131	-	99	73.267	Takifugu_rubripes
ENSCSAVG00000006533	-	99	73.364	ENSTRUG00000000150	upf1	99	73.000	Takifugu_rubripes
ENSCSAVG00000006533	-	99	68.822	ENSTTRG00000011544	UPF1	99	68.822	Tursiops_truncatus
ENSCSAVG00000006533	-	99	71.908	ENSUAMG00000007093	UPF1	99	71.820	Ursus_americanus
ENSCSAVG00000006533	-	94	74.187	ENSUMAG00000006652	UPF1	99	75.077	Ursus_maritimus
ENSCSAVG00000006533	-	99	71.908	ENSVVUG00000007797	UPF1	99	71.820	Vulpes_vulpes
ENSCSAVG00000006533	-	99	63.112	ENSXETG00000013602	upf1	99	63.034	Xenopus_tropicalis
ENSCSAVG00000006533	-	94	73.821	ENSXCOG00000005764	-	100	73.917	Xiphophorus_couchianus
ENSCSAVG00000006533	-	97	73.427	ENSXCOG00000015275	-	96	73.095	Xiphophorus_couchianus
ENSCSAVG00000006533	-	99	73.063	ENSXMAG00000002540	-	99	73.063	Xiphophorus_maculatus
ENSCSAVG00000006533	-	99	73.297	ENSXMAG00000001703	-	99	72.975	Xiphophorus_maculatus