EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSCSAVG00000006538 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Plus strand
Length: 4247 bases
Position: chrreftig_17:934842-939088
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000011183	Sof1	PF04158.14	2e-32	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000011314	-	1956	-	ENSCSAVP00000011183	445 (aa)	-	H2Z0S1

Gene Model

Click here to download ENSCSAVG00000006538's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000006538's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000006538	-	98	63.303	ENSG00000164934	DCAF13	95	71.429	Homo_sapiens
ENSCSAVG00000006538	-	99	64.334	ENSAPOG00000000524	dcaf13	99	64.334	Acanthochromis_polyacanthus
ENSCSAVG00000006538	-	99	62.613	ENSAMEG00000001595	DCAF13	99	62.613	Ailuropoda_melanoleuca
ENSCSAVG00000006538	-	99	62.528	ENSACIG00000003110	dcaf13	99	62.528	Amphilophus_citrinellus
ENSCSAVG00000006538	-	99	63.883	ENSAOCG00000011982	dcaf13	99	63.883	Amphiprion_ocellaris
ENSCSAVG00000006538	-	99	57.399	ENSAPEG00000021156	dcaf13	99	57.399	Amphiprion_percula
ENSCSAVG00000006538	-	99	63.205	ENSATEG00000024751	dcaf13	99	63.205	Anabas_testudineus
ENSCSAVG00000006538	-	95	63.294	ENSAPLG00000002811	DCAF13	95	63.294	Anas_platyrhynchos
ENSCSAVG00000006538	-	100	62.332	ENSACAG00000009465	DCAF13	100	62.332	Anolis_carolinensis
ENSCSAVG00000006538	-	99	50.113	ENSANAG00000023472	-	99	50.340	Aotus_nancymaae
ENSCSAVG00000006538	-	99	63.883	ENSANAG00000020798	DCAF13	99	63.883	Aotus_nancymaae
ENSCSAVG00000006538	-	99	62.754	ENSACLG00000025212	dcaf13	89	62.754	Astatotilapia_calliptera
ENSCSAVG00000006538	-	100	63.677	ENSAMXG00000037008	dcaf13	100	63.677	Astyanax_mexicanus
ENSCSAVG00000006538	-	98	63.303	ENSBTAG00000021449	DCAF13	99	63.575	Bos_taurus
ENSCSAVG00000006538	-	94	47.733	WBGene00022742	ZK430.7	93	47.733	Caenorhabditis_elegans
ENSCSAVG00000006538	-	98	63.303	ENSCJAG00000016181	DCAF13	99	63.431	Callithrix_jacchus
ENSCSAVG00000006538	-	99	63.801	ENSCAFG00000000663	DCAF13	99	63.801	Canis_familiaris
ENSCSAVG00000006538	-	99	63.801	ENSCAFG00020003044	DCAF13	99	63.801	Canis_lupus_dingo
ENSCSAVG00000006538	-	99	64.253	ENSCHIG00000020556	DCAF13	99	64.253	Capra_hircus
ENSCSAVG00000006538	-	99	62.670	ENSTSYG00000003307	DCAF13	99	62.670	Carlito_syrichta
ENSCSAVG00000006538	-	94	56.699	ENSCAPG00000007305	DCAF13	99	55.502	Cavia_aperea
ENSCSAVG00000006538	-	99	62.980	ENSCPOG00000012291	DCAF13	99	62.980	Cavia_porcellus
ENSCSAVG00000006538	-	99	63.205	ENSCCAG00000033103	DCAF13	76	63.205	Cebus_capucinus
ENSCSAVG00000006538	-	99	46.606	ENSCATG00000037371	-	95	46.606	Cercocebus_atys
ENSCSAVG00000006538	-	99	63.883	ENSCATG00000032160	DCAF13	85	63.883	Cercocebus_atys
ENSCSAVG00000006538	-	99	62.980	ENSCLAG00000006565	DCAF13	99	62.980	Chinchilla_lanigera
ENSCSAVG00000006538	-	99	64.027	ENSCSAG00000011887	DCAF13	99	64.027	Chlorocebus_sabaeus
ENSCSAVG00000006538	-	71	53.628	ENSCHOG00000003007	-	73	53.628	Choloepus_hoffmanni
ENSCSAVG00000006538	-	99	64.108	ENSCPBG00000026050	DCAF13	99	64.108	Chrysemys_picta_bellii
ENSCSAVG00000006538	-	99	87.075	ENSCING00000005282	-	99	87.075	Ciona_intestinalis
ENSCSAVG00000006538	-	99	58.014	ENSCANG00000043032	DCAF13	75	58.014	Colobus_angolensis_palliatus
ENSCSAVG00000006538	-	99	45.125	ENSCANG00000038828	-	95	45.125	Colobus_angolensis_palliatus
ENSCSAVG00000006538	-	99	63.801	ENSCGRG00001023256	Dcaf13	99	63.801	Cricetulus_griseus_chok1gshd
ENSCSAVG00000006538	-	95	62.884	ENSCGRG00000004862	Dcaf13	92	62.884	Cricetulus_griseus_crigri
ENSCSAVG00000006538	-	99	62.896	ENSCSEG00000013595	dcaf13	99	63.122	Cynoglossus_semilaevis
ENSCSAVG00000006538	-	99	55.530	ENSCVAG00000010337	dcaf13	99	55.530	Cyprinodon_variegatus
ENSCSAVG00000006538	-	100	62.108	ENSDARG00000002267	dcaf13	100	62.108	Danio_rerio
ENSCSAVG00000006538	-	81	60.497	ENSDNOG00000044885	DCAF13	95	60.497	Dasypus_novemcinctus
ENSCSAVG00000006538	-	99	62.217	ENSDORG00000011873	Dcaf13	99	62.217	Dipodomys_ordii
ENSCSAVG00000006538	-	99	55.079	FBgn0036500	CG7275	99	55.079	Drosophila_melanogaster
ENSCSAVG00000006538	-	99	61.124	ENSETEG00000004777	DCAF13	77	61.124	Echinops_telfairi
ENSCSAVG00000006538	-	100	53.139	ENSEBUG00000008116	dcaf13	100	53.139	Eptatretus_burgeri
ENSCSAVG00000006538	-	99	63.657	ENSEASG00005001266	DCAF13	99	63.657	Equus_asinus_asinus
ENSCSAVG00000006538	-	99	63.657	ENSECAG00000009654	DCAF13	99	63.657	Equus_caballus
ENSCSAVG00000006538	-	99	56.180	ENSEEUG00000003286	DCAF13	77	56.180	Erinaceus_europaeus
ENSCSAVG00000006538	-	99	59.729	ENSELUG00000006191	dcaf13	99	63.391	Esox_lucius
ENSCSAVG00000006538	-	99	63.801	ENSFCAG00000027256	DCAF13	99	63.801	Felis_catus
ENSCSAVG00000006538	-	99	63.431	ENSFALG00000005982	DCAF13	99	63.431	Ficedula_albicollis
ENSCSAVG00000006538	-	99	63.205	ENSFDAG00000014869	DCAF13	99	63.205	Fukomys_damarensis
ENSCSAVG00000006538	-	99	62.302	ENSFHEG00000009965	dcaf13	99	62.302	Fundulus_heteroclitus
ENSCSAVG00000006538	-	99	62.443	ENSGMOG00000005753	dcaf13	99	62.443	Gadus_morhua
ENSCSAVG00000006538	-	99	64.334	ENSGALG00000034618	DCAF13	78	64.334	Gallus_gallus
ENSCSAVG00000006538	-	94	63.158	ENSGAFG00000000368	dcaf13	88	63.158	Gambusia_affinis
ENSCSAVG00000006538	-	99	62.528	ENSGACG00000004840	dcaf13	99	62.528	Gasterosteus_aculeatus
ENSCSAVG00000006538	-	99	64.108	ENSGAGG00000025283	DCAF13	99	64.108	Gopherus_agassizii
ENSCSAVG00000006538	-	93	62.954	ENSGGOG00000015124	DCAF13	79	63.095	Gorilla_gorilla
ENSCSAVG00000006538	-	99	62.754	ENSHBUG00000015794	dcaf13	89	62.754	Haplochromis_burtoni
ENSCSAVG00000006538	-	99	62.077	ENSHGLG00000008862	DCAF13	99	62.077	Heterocephalus_glaber_female
ENSCSAVG00000006538	-	99	62.077	ENSHGLG00100017157	DCAF13	99	62.077	Heterocephalus_glaber_male
ENSCSAVG00000006538	-	99	62.754	ENSHCOG00000014302	dcaf13	99	62.754	Hippocampus_comes
ENSCSAVG00000006538	-	100	64.798	ENSIPUG00000022430	dcaf13	100	64.798	Ictalurus_punctatus
ENSCSAVG00000006538	-	98	63.073	ENSSTOG00000008009	DCAF13	99	63.348	Ictidomys_tridecemlineatus
ENSCSAVG00000006538	-	81	62.881	ENSJJAG00000000742	-	94	62.881	Jaculus_jaculus
ENSCSAVG00000006538	-	99	56.109	ENSJJAG00000001990	-	99	56.109	Jaculus_jaculus
ENSCSAVG00000006538	-	99	62.217	ENSKMAG00000002350	dcaf13	99	62.217	Kryptolebias_marmoratus
ENSCSAVG00000006538	-	99	64.108	ENSLBEG00000002441	dcaf13	99	64.108	Labrus_bergylta
ENSCSAVG00000006538	-	99	65.611	ENSLACG00000013358	DCAF13	99	65.611	Latimeria_chalumnae
ENSCSAVG00000006538	-	100	64.574	ENSLOCG00000009498	dcaf13	100	64.574	Lepisosteus_oculatus
ENSCSAVG00000006538	-	99	63.801	ENSLAFG00000009807	DCAF13	99	63.801	Loxodonta_africana
ENSCSAVG00000006538	-	99	64.108	ENSMFAG00000008982	-	76	64.108	Macaca_fascicularis
ENSCSAVG00000006538	-	99	62.443	ENSMFAG00000043378	-	99	62.443	Macaca_fascicularis
ENSCSAVG00000006538	-	99	64.027	ENSMMUG00000019594	-	99	64.027	Macaca_mulatta
ENSCSAVG00000006538	-	80	61.690	ENSMMUG00000019405	-	70	61.690	Macaca_mulatta
ENSCSAVG00000006538	-	99	62.670	ENSMNEG00000035898	-	99	62.670	Macaca_nemestrina
ENSCSAVG00000006538	-	99	56.433	ENSMNEG00000033963	-	75	56.433	Macaca_nemestrina
ENSCSAVG00000006538	-	99	45.249	ENSMNEG00000030562	-	95	45.249	Macaca_nemestrina
ENSCSAVG00000006538	-	99	47.856	ENSMLEG00000039177	-	99	47.856	Mandrillus_leucophaeus
ENSCSAVG00000006538	-	99	64.027	ENSMLEG00000041996	DCAF13	99	64.027	Mandrillus_leucophaeus
ENSCSAVG00000006538	-	99	63.122	ENSMAMG00000003196	dcaf13	99	63.122	Mastacembelus_armatus
ENSCSAVG00000006538	-	99	62.754	ENSMZEG00005012249	dcaf13	89	62.754	Maylandia_zebra
ENSCSAVG00000006538	-	94	63.571	ENSMGAG00000012340	DCAF13	98	63.571	Meleagris_gallopavo
ENSCSAVG00000006538	-	99	54.977	ENSMAUG00000017580	Dcaf13	99	54.977	Mesocricetus_auratus
ENSCSAVG00000006538	-	98	63.073	ENSMICG00000006907	DCAF13	99	63.348	Microcebus_murinus
ENSCSAVG00000006538	-	99	62.754	ENSMOCG00000011609	Dcaf13	99	62.754	Microtus_ochrogaster
ENSCSAVG00000006538	-	99	63.883	ENSMMOG00000017905	dcaf13	99	63.883	Mola_mola
ENSCSAVG00000006538	-	99	64.027	ENSMODG00000005549	DCAF13	99	64.253	Monodelphis_domestica
ENSCSAVG00000006538	-	99	62.302	ENSMALG00000007415	dcaf13	99	62.302	Monopterus_albus
ENSCSAVG00000006538	-	99	63.348	MGP_CAROLIEiJ_G0019757	Dcaf13	99	63.348	Mus_caroli
ENSCSAVG00000006538	-	99	63.883	ENSMUSG00000022300	Dcaf13	99	63.883	Mus_musculus
ENSCSAVG00000006538	-	99	63.575	MGP_PahariEiJ_G0019766	Dcaf13	99	63.575	Mus_pahari
ENSCSAVG00000006538	-	99	63.801	MGP_SPRETEiJ_G0020654	Dcaf13	99	63.801	Mus_spretus
ENSCSAVG00000006538	-	91	56.188	ENSMPUG00000004976	-	98	56.188	Mustela_putorius_furo
ENSCSAVG00000006538	-	98	63.073	ENSMLUG00000007375	DCAF13	99	63.348	Myotis_lucifugus
ENSCSAVG00000006538	-	99	62.980	ENSNGAG00000021670	Dcaf13	99	62.980	Nannospalax_galili
ENSCSAVG00000006538	-	99	62.754	ENSNBRG00000007078	dcaf13	99	62.754	Neolamprologus_brichardi
ENSCSAVG00000006538	-	99	46.032	ENSNLEG00000032043	-	99	46.032	Nomascus_leucogenys
ENSCSAVG00000006538	-	98	63.532	ENSNLEG00000003791	DCAF13	74	63.657	Nomascus_leucogenys
ENSCSAVG00000006538	-	75	66.129	ENSMEUG00000014697	-	79	65.600	Notamacropus_eugenii
ENSCSAVG00000006538	-	99	62.896	ENSODEG00000000870	DCAF13	99	62.896	Octodon_degus
ENSCSAVG00000006538	-	99	62.528	ENSONIG00000000142	dcaf13	99	62.528	Oreochromis_niloticus
ENSCSAVG00000006538	-	99	63.122	ENSOCUG00000009197	DCAF13	99	63.122	Oryctolagus_cuniculus
ENSCSAVG00000006538	-	99	62.302	ENSORLG00000002363	dcaf13	99	62.302	Oryzias_latipes
ENSCSAVG00000006538	-	99	62.302	ENSORLG00020001143	dcaf13	99	62.302	Oryzias_latipes_hni
ENSCSAVG00000006538	-	99	61.851	ENSORLG00015015911	dcaf13	99	61.851	Oryzias_latipes_hsok
ENSCSAVG00000006538	-	99	62.980	ENSOMEG00000006040	dcaf13	99	62.980	Oryzias_melastigma
ENSCSAVG00000006538	-	98	63.303	ENSOGAG00000002277	DCAF13	99	63.575	Otolemur_garnettii
ENSCSAVG00000006538	-	99	64.480	ENSOARG00000016227	DCAF13	99	64.480	Ovis_aries
ENSCSAVG00000006538	-	98	63.073	ENSPPAG00000029408	DCAF13	74	63.348	Pan_paniscus
ENSCSAVG00000006538	-	99	63.348	ENSPPRG00000005766	DCAF13	99	63.348	Panthera_pardus
ENSCSAVG00000006538	-	99	63.801	ENSPTIG00000016790	DCAF13	99	63.801	Panthera_tigris_altaica
ENSCSAVG00000006538	-	98	63.073	ENSPTRG00000020493	DCAF13	74	63.348	Pan_troglodytes
ENSCSAVG00000006538	-	99	63.883	ENSPANG00000010643	-	76	63.883	Papio_anubis
ENSCSAVG00000006538	-	99	61.991	ENSPANG00000026479	-	99	61.991	Papio_anubis
ENSCSAVG00000006538	-	99	62.443	ENSPKIG00000017471	dcaf13	99	62.443	Paramormyrops_kingsleyae
ENSCSAVG00000006538	-	99	61.625	ENSPSIG00000016768	DCAF13	99	61.851	Pelodiscus_sinensis
ENSCSAVG00000006538	-	99	60.497	ENSPMGG00000022144	dcaf13	99	60.497	Periophthalmus_magnuspinnatus
ENSCSAVG00000006538	-	99	63.348	ENSPEMG00000011958	Dcaf13	99	63.348	Peromyscus_maniculatus_bairdii
ENSCSAVG00000006538	-	99	63.122	ENSPCIG00000026186	DCAF13	99	63.348	Phascolarctos_cinereus
ENSCSAVG00000006538	-	99	63.431	ENSPFOG00000019444	dcaf13	99	63.431	Poecilia_formosa
ENSCSAVG00000006538	-	99	63.431	ENSPLAG00000015924	dcaf13	99	63.431	Poecilia_latipinna
ENSCSAVG00000006538	-	99	63.431	ENSPMEG00000004022	dcaf13	99	63.431	Poecilia_mexicana
ENSCSAVG00000006538	-	99	63.431	ENSPREG00000016063	dcaf13	99	63.431	Poecilia_reticulata
ENSCSAVG00000006538	-	98	63.073	ENSPPYG00000018809	-	99	63.348	Pongo_abelii
ENSCSAVG00000006538	-	98	60.780	ENSPCAG00000007620	DCAF13	75	60.948	Procavia_capensis
ENSCSAVG00000006538	-	97	58.565	ENSPCOG00000028064	-	99	58.904	Propithecus_coquereli
ENSCSAVG00000006538	-	99	64.253	ENSPVAG00000017178	DCAF13	75	64.253	Pteropus_vampyrus
ENSCSAVG00000006538	-	99	62.754	ENSPNYG00000003861	dcaf13	99	62.754	Pundamilia_nyererei
ENSCSAVG00000006538	-	100	63.004	ENSPNAG00000010091	dcaf13	100	63.004	Pygocentrus_nattereri
ENSCSAVG00000006538	-	99	63.348	ENSRNOG00000004301	Dcaf13	99	63.348	Rattus_norvegicus
ENSCSAVG00000006538	-	99	63.883	ENSRBIG00000032300	DCAF13	85	63.883	Rhinopithecus_bieti
ENSCSAVG00000006538	-	99	63.801	ENSRROG00000040442	DCAF13	99	63.801	Rhinopithecus_roxellana
ENSCSAVG00000006538	-	98	44.749	ENSRROG00000032221	-	98	44.749	Rhinopithecus_roxellana
ENSCSAVG00000006538	-	99	42.796	YLL011W	-	94	42.796	Saccharomyces_cerevisiae
ENSCSAVG00000006538	-	99	63.657	ENSSBOG00000025597	DCAF13	99	63.657	Saimiri_boliviensis_boliviensis
ENSCSAVG00000006538	-	99	62.754	ENSSHAG00000006588	DCAF13	99	62.980	Sarcophilus_harrisii
ENSCSAVG00000006538	-	99	61.765	ENSSFOG00015006138	dcaf13	99	61.765	Scleropages_formosus
ENSCSAVG00000006538	-	99	62.528	ENSSMAG00000009568	dcaf13	99	62.528	Scophthalmus_maximus
ENSCSAVG00000006538	-	99	62.980	ENSSLDG00000010517	dcaf13	99	62.980	Seriola_lalandi_dorsalis
ENSCSAVG00000006538	-	100	62.780	ENSSPUG00000009148	DCAF13	100	63.004	Sphenodon_punctatus
ENSCSAVG00000006538	-	99	63.883	ENSSPAG00000019890	dcaf13	99	63.883	Stegastes_partitus
ENSCSAVG00000006538	-	99	62.670	ENSSSCG00000006048	DCAF13	99	62.670	Sus_scrofa
ENSCSAVG00000006538	-	94	63.095	ENSTGUG00000012152	DCAF13	99	63.333	Taeniopygia_guttata
ENSCSAVG00000006538	-	100	62.780	ENSTRUG00000007438	dcaf13	100	62.780	Takifugu_rubripes
ENSCSAVG00000006538	-	94	62.857	ENSTNIG00000008215	dcaf13	85	62.857	Tetraodon_nigroviridis
ENSCSAVG00000006538	-	98	54.358	ENSTTRG00000014906	DCAF13	74	54.525	Tursiops_truncatus
ENSCSAVG00000006538	-	99	63.575	ENSUAMG00000017931	DCAF13	99	63.575	Ursus_americanus
ENSCSAVG00000006538	-	99	57.955	ENSUMAG00000019830	DCAF13	75	57.955	Ursus_maritimus
ENSCSAVG00000006538	-	99	63.883	ENSVPAG00000006725	DCAF13	75	63.883	Vicugna_pacos
ENSCSAVG00000006538	-	94	63.876	ENSVVUG00000016884	DCAF13	89	63.876	Vulpes_vulpes
ENSCSAVG00000006538	-	82	63.562	ENSXETG00000004092	dcaf13	100	63.562	Xenopus_tropicalis
ENSCSAVG00000006538	-	99	60.271	ENSXCOG00000017005	dcaf13	99	60.271	Xiphophorus_couchianus
ENSCSAVG00000006538	-	99	63.657	ENSXMAG00000026809	dcaf13	99	63.657	Xiphophorus_maculatus