EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSCSAVG00000006729 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ciona_savignyi
Status: putative
Strand: Minus strand
Length: 2575 bases
Position: chrreftig_17:961191-963765
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSCSAVP00000011478	zf-C2H2	PF00096.26	1.9e-43	1	8
ENSCSAVP00000011478	zf-C2H2	PF00096.26	1.9e-43	2	8
ENSCSAVP00000011478	zf-C2H2	PF00096.26	1.9e-43	3	8
ENSCSAVP00000011478	zf-C2H2	PF00096.26	1.9e-43	4	8
ENSCSAVP00000011478	zf-C2H2	PF00096.26	1.9e-43	5	8
ENSCSAVP00000011478	zf-C2H2	PF00096.26	1.9e-43	6	8
ENSCSAVP00000011478	zf-C2H2	PF00096.26	1.9e-43	7	8
ENSCSAVP00000011478	zf-C2H2	PF00096.26	1.9e-43	8	8
ENSCSAVP00000011478	zf-met	PF12874.7	5.4e-15	1	2
ENSCSAVP00000011478	zf-met	PF12874.7	5.4e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSCSAVT00000011611	-	1668	-	ENSCSAVP00000011478	540 (aa)	-	H2Z1L6

Gene Model

Click here to download ENSCSAVG00000006729's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000006729's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSCSAVG00000006729	-	100	68.488	ENSCSAVG00000005896	-	100	67.942
ENSCSAVG00000006729	-	71	39.785	ENSCSAVG00000000690	-	88	48.101
ENSCSAVG00000006729	-	68	33.065	ENSCSAVG00000000520	-	100	33.577
ENSCSAVG00000006729	-	69	35.088	ENSCSAVG00000009583	-	100	35.088
ENSCSAVG00000006729	-	67	34.188	ENSCSAVG00000011749	-	98	33.929
ENSCSAVG00000006729	-	71	33.851	ENSCSAVG00000001808	-	99	34.286
ENSCSAVG00000006729	-	68	37.615	ENSCSAVG00000000655	-	98	37.615
ENSCSAVG00000006729	-	94	45.161	ENSCSAVG00000004499	-	100	44.444
ENSCSAVG00000006729	-	69	36.792	ENSCSAVG00000000673	-	100	33.918
ENSCSAVG00000006729	-	75	37.391	ENSCSAVG00000007589	-	100	37.391
ENSCSAVG00000006729	-	74	34.722	ENSCSAVG00000001989	-	100	34.076
ENSCSAVG00000006729	-	69	33.577	ENSCSAVG00000009819	-	76	33.577
ENSCSAVG00000006729	-	71	33.648	ENSCSAVG00000010960	-	99	32.895
ENSCSAVG00000006729	-	71	40.541	ENSCSAVG00000008862	-	100	40.541
ENSCSAVG00000006729	-	67	33.333	ENSCSAVG00000001949	-	99	33.333
ENSCSAVG00000006729	-	68	38.462	ENSCSAVG00000006650	-	99	38.462
ENSCSAVG00000006729	-	69	33.628	ENSCSAVG00000005904	-	100	33.628
ENSCSAVG00000006729	-	68	37.931	ENSCSAVG00000004543	-	99	32.867
ENSCSAVG00000006729	-	72	39.623	ENSCSAVG00000006141	-	100	39.252
ENSCSAVG00000006729	-	68	36.029	ENSCSAVG00000007918	-	100	32.370
ENSCSAVG00000006729	-	70	31.379	ENSCSAVG00000002179	-	99	31.379
ENSCSAVG00000006729	-	68	35.252	ENSCSAVG00000009739	-	57	35.252
ENSCSAVG00000006729	-	69	33.235	ENSCSAVG00000004678	-	99	32.822
ENSCSAVG00000006729	-	71	35.514	ENSCSAVG00000009574	-	99	35.514
ENSCSAVG00000006729	-	83	34.286	ENSCSAVG00000000293	-	100	37.838
ENSCSAVG00000006729	-	88	35.200	ENSCSAVG00000001834	-	99	44.898
ENSCSAVG00000006729	-	68	36.957	ENSCSAVG00000001830	-	99	36.957
ENSCSAVG00000006729	-	52	36.735	ENSCSAVG00000006028	-	51	36.735
ENSCSAVG00000006729	-	70	35.455	ENSCSAVG00000010156	-	91	35.455
ENSCSAVG00000006729	-	66	40.506	ENSCSAVG00000011146	-	87	40.506
ENSCSAVG00000006729	-	69	33.077	ENSCSAVG00000000649	-	99	33.077
ENSCSAVG00000006729	-	68	35.507	ENSCSAVG00000000642	-	100	35.294
ENSCSAVG00000006729	-	69	33.898	ENSCSAVG00000004762	-	100	33.898
ENSCSAVG00000006729	-	69	34.884	ENSCSAVG00000006608	-	100	33.693
ENSCSAVG00000006729	-	84	32.964	ENSCSAVG00000004703	-	99	38.793
ENSCSAVG00000006729	-	68	37.391	ENSCSAVG00000003895	-	99	37.391
ENSCSAVG00000006729	-	76	33.427	ENSCSAVG00000009953	-	98	33.427

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSCSAVG00000006729	-	80	33.784	ENSACIG00000017166	-	65	32.432	Amphilophus_citrinellus
ENSCSAVG00000006729	-	67	36.000	ENSAOCG00000018579	-	77	36.000	Amphiprion_ocellaris
ENSCSAVG00000006729	-	76	37.838	ENSAPEG00000007889	-	81	37.838	Amphiprion_percula
ENSCSAVG00000006729	-	71	32.402	ENSAPEG00000019755	-	88	32.402	Amphiprion_percula
ENSCSAVG00000006729	-	74	32.597	ENSAPEG00000007910	-	52	32.597	Amphiprion_percula
ENSCSAVG00000006729	-	70	32.065	ENSAMXG00000032845	-	53	31.522	Astyanax_mexicanus
ENSCSAVG00000006729	-	64	31.206	WBGene00021374	Y37E11B.1	88	31.206	Caenorhabditis_elegans
ENSCSAVG00000006729	-	68	32.051	ENSCING00000003384	-	98	31.410	Ciona_intestinalis
ENSCSAVG00000006729	-	100	62.637	ENSCING00000004861	zf(c2h2)-12	100	62.637	Ciona_intestinalis
ENSCSAVG00000006729	-	68	33.088	ENSCING00000005713	-	68	32.836	Ciona_intestinalis
ENSCSAVG00000006729	-	80	31.527	ENSCSEG00000005491	-	94	31.527	Cynoglossus_semilaevis
ENSCSAVG00000006729	-	63	30.380	ENSCVAG00000019574	-	79	30.380	Cyprinodon_variegatus
ENSCSAVG00000006729	-	74	32.544	ENSCVAG00000016098	-	91	32.544	Cyprinodon_variegatus
ENSCSAVG00000006729	-	69	37.273	ENSCVAG00000002295	-	80	37.273	Cyprinodon_variegatus
ENSCSAVG00000006729	-	69	36.111	FBgn0033934	CG17385	81	37.226	Drosophila_melanogaster
ENSCSAVG00000006729	-	68	41.250	FBgn0028895	CG17328	65	37.037	Drosophila_melanogaster
ENSCSAVG00000006729	-	68	43.478	ENSEBUG00000008392	-	76	38.043	Eptatretus_burgeri
ENSCSAVG00000006729	-	74	34.532	ENSEBUG00000004841	-	86	34.532	Eptatretus_burgeri
ENSCSAVG00000006729	-	74	35.250	ENSEBUG00000015522	-	74	35.250	Eptatretus_burgeri
ENSCSAVG00000006729	-	71	34.943	ENSEBUG00000000735	-	98	35.310	Eptatretus_burgeri
ENSCSAVG00000006729	-	79	31.398	ENSELUG00000020794	-	69	31.266	Esox_lucius
ENSCSAVG00000006729	-	74	34.975	ENSFHEG00000013644	-	76	34.225	Fundulus_heteroclitus
ENSCSAVG00000006729	-	84	31.661	ENSFHEG00000007344	-	55	31.661	Fundulus_heteroclitus
ENSCSAVG00000006729	-	81	30.263	ENSFHEG00000012990	-	89	35.227	Fundulus_heteroclitus
ENSCSAVG00000006729	-	71	31.250	ENSFHEG00000020889	-	81	31.250	Fundulus_heteroclitus
ENSCSAVG00000006729	-	69	35.000	ENSGACG00000018415	-	100	35.000	Gasterosteus_aculeatus
ENSCSAVG00000006729	-	71	35.429	ENSHCOG00000017437	-	81	35.429	Hippocampus_comes
ENSCSAVG00000006729	-	75	32.824	ENSHCOG00000001313	-	62	32.061	Hippocampus_comes
ENSCSAVG00000006729	-	69	30.649	ENSKMAG00000012909	-	87	31.694	Kryptolebias_marmoratus
ENSCSAVG00000006729	-	71	33.333	ENSKMAG00000007658	-	87	36.937	Kryptolebias_marmoratus
ENSCSAVG00000006729	-	74	31.852	ENSLBEG00000026573	-	71	31.852	Labrus_bergylta
ENSCSAVG00000006729	-	65	30.303	ENSMALG00000013521	-	70	35.366	Monopterus_albus
ENSCSAVG00000006729	-	71	37.647	ENSONIG00000007812	-	99	37.647	Oreochromis_niloticus
ENSCSAVG00000006729	-	74	32.967	ENSONIG00000016416	-	99	32.971	Oreochromis_niloticus
ENSCSAVG00000006729	-	69	33.333	ENSONIG00000009894	-	100	33.333	Oreochromis_niloticus
ENSCSAVG00000006729	-	68	34.225	ENSONIG00000003471	-	99	32.821	Oreochromis_niloticus
ENSCSAVG00000006729	-	70	35.417	ENSORLG00015018254	-	94	34.868	Oryzias_latipes_hsok
ENSCSAVG00000006729	-	69	33.140	ENSPMGG00000019842	-	74	33.140	Periophthalmus_magnuspinnatus
ENSCSAVG00000006729	-	80	33.333	ENSPMGG00000000218	-	75	33.071	Periophthalmus_magnuspinnatus
ENSCSAVG00000006729	-	69	31.169	ENSPMGG00000000489	-	78	31.169	Periophthalmus_magnuspinnatus
ENSCSAVG00000006729	-	71	32.177	ENSPMGG00000022524	-	93	32.177	Periophthalmus_magnuspinnatus
ENSCSAVG00000006729	-	74	30.597	ENSPMGG00000000458	-	91	33.333	Periophthalmus_magnuspinnatus
ENSCSAVG00000006729	-	69	34.000	ENSPMGG00000000243	-	77	30.288	Periophthalmus_magnuspinnatus
ENSCSAVG00000006729	-	73	30.435	ENSPMGG00000010664	-	94	30.435	Periophthalmus_magnuspinnatus
ENSCSAVG00000006729	-	68	33.523	ENSPMAG00000007983	-	99	33.523	Petromyzon_marinus
ENSCSAVG00000006729	-	68	32.973	ENSPFOG00000020691	-	89	34.010	Poecilia_formosa
ENSCSAVG00000006729	-	70	34.021	ENSPFOG00000002879	-	99	33.957	Poecilia_formosa
ENSCSAVG00000006729	-	71	33.962	ENSPLAG00000006174	-	75	34.146	Poecilia_latipinna
ENSCSAVG00000006729	-	67	35.338	ENSPLAG00000011254	-	58	35.338	Poecilia_latipinna
ENSCSAVG00000006729	-	69	31.563	ENSPMEG00000019229	-	67	31.563	Poecilia_mexicana
ENSCSAVG00000006729	-	88	32.386	ENSPMEG00000007503	-	91	32.386	Poecilia_mexicana
ENSCSAVG00000006729	-	69	35.556	ENSPMEG00000022676	-	94	31.847	Poecilia_mexicana
ENSCSAVG00000006729	-	84	35.075	ENSPREG00000015352	-	88	35.075	Poecilia_reticulata
ENSCSAVG00000006729	-	69	35.200	ENSPREG00000016204	-	73	31.980	Poecilia_reticulata
ENSCSAVG00000006729	-	74	31.268	ENSPREG00000007146	-	72	31.268	Poecilia_reticulata
ENSCSAVG00000006729	-	79	30.653	ENSSMAG00000000404	-	65	31.694	Scophthalmus_maximus
ENSCSAVG00000006729	-	77	36.697	ENSSDUG00000000946	-	96	36.697	Seriola_dumerili
ENSCSAVG00000006729	-	69	34.437	ENSSLDG00000002515	-	71	33.846	Seriola_lalandi_dorsalis
ENSCSAVG00000006729	-	69	35.429	ENSSPAG00000009405	-	53	35.429	Stegastes_partitus
ENSCSAVG00000006729	-	73	31.128	ENSTNIG00000008154	-	99	31.128	Tetraodon_nigroviridis
ENSCSAVG00000006729	-	69	32.710	ENSXCOG00000005697	-	97	38.462	Xiphophorus_couchianus
ENSCSAVG00000006729	-	62	35.338	ENSXMAG00000022242	-	75	35.338	Xiphophorus_maculatus