EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSCSAVG00000006813 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
-
Gene Type
protein_coding
Species
Ciona_savignyi
Status
putative
Strand
Plus strand
Length
5677 bases
Position
chrreftig_16:1116447-1122123
Accession
-
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSCSAVP00000011611TransformerPF06495.116.8e-0711
ENSCSAVP00000011612RRM_1PF00076.224.8e-3313
ENSCSAVP00000011612RRM_1PF00076.224.8e-3323
ENSCSAVP00000011612RRM_1PF00076.224.8e-3333
ENSCSAVP00000011611RRM_1PF00076.225.2e-3313
ENSCSAVP00000011611RRM_1PF00076.225.2e-3323
ENSCSAVP00000011611RRM_1PF00076.225.2e-3333
ENSCSAVP00000011610RRM_1PF00076.226e-3313
ENSCSAVP00000011610RRM_1PF00076.226e-3323
ENSCSAVP00000011610RRM_1PF00076.226e-3333
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSCSAVT00000011745-1928-ENSCSAVP00000011610477 (aa)-H2Z1Z8
ENSCSAVT00000011747-1749-ENSCSAVP00000011612456 (aa)-H2Z200
ENSCSAVT00000011746-1575-ENSCSAVP00000011611462 (aa)-H2Z1Z9
Gene Model
Click here to download ENSCSAVG00000006813's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSCSAVG00000006813's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSCSAVG00000006813-8569.643ENSG00000063244U2AF29971.010Homo_sapiens
ENSCSAVG00000006813-6766.873ENSAPOG00000023155u2af2a9966.873Acanthochromis_polyacanthus
ENSCSAVG00000006813-9362.500ENSAPOG00000002208-8368.974Acanthochromis_polyacanthus
ENSCSAVG00000006813-7866.209ENSAMEG00000003864U2AF28468.571Ailuropoda_melanoleuca
ENSCSAVG00000006813-8567.089ENSACIG00000005749u2af2a9069.072Amphilophus_citrinellus
ENSCSAVG00000006813-9560.510ENSACIG00000014173-8666.917Amphilophus_citrinellus
ENSCSAVG00000006813-9963.100ENSAOCG00000015571u2af2a8569.330Amphiprion_ocellaris
ENSCSAVG00000006813-9362.500ENSAOCG00000003595-8368.974Amphiprion_ocellaris
ENSCSAVG00000006813-8567.342ENSAPEG00000009376u2af2a9169.330Amphiprion_percula
ENSCSAVG00000006813-9562.092ENSAPEG00000020062-8468.380Amphiprion_percula
ENSCSAVG00000006813-9862.281ENSATEG00000022332u2af2a8269.330Anabas_testudineus
ENSCSAVG00000006813-9562.554ENSATEG00000020577-8569.231Anabas_testudineus
ENSCSAVG00000006813-8668.750ENSACAG00000015489U2AF28468.861Anolis_carolinensis
ENSCSAVG00000006813-7270.567ENSANAG00000028042U2AF27971.377Aotus_nancymaae
ENSCSAVG00000006813-8567.089ENSACLG00000022181u2af2a9069.072Astatotilapia_calliptera
ENSCSAVG00000006813-9362.281ENSACLG00000020793-8368.718Astatotilapia_calliptera
ENSCSAVG00000006813-9761.978ENSAMXG00000039454u2af2b8568.638Astyanax_mexicanus
ENSCSAVG00000006813-9062.791ENSAMXG00000033347u2af2a8566.667Astyanax_mexicanus
ENSCSAVG00000006813-8767.246ENSBTAG00000002830U2AF28569.588Bos_taurus
ENSCSAVG00000006813-8955.314WBGene00006697uaf-110053.425Caenorhabditis_elegans
ENSCSAVG00000006813-8568.939ENSCJAG00000017128U2AF28668.939Callithrix_jacchus
ENSCSAVG00000006813-8569.643ENSCAFG00000002551U2AF28269.845Canis_familiaris
ENSCSAVG00000006813-8668.828ENSCAFG00020015445U2AF28368.939Canis_lupus_dingo
ENSCSAVG00000006813-8757.143ENSCHIG00000023595U2AF28658.897Capra_hircus
ENSCSAVG00000006813-9065.558ENSTSYG00000007432U2AF28668.939Carlito_syrichta
ENSCSAVG00000006813-8569.192ENSCAPG00000008466U2AF28669.192Cavia_aperea
ENSCSAVG00000006813-8569.192ENSCPOG00000001582U2AF28369.192Cavia_porcellus
ENSCSAVG00000006813-8568.939ENSCCAG00000023336U2AF28368.939Cebus_capucinus
ENSCSAVG00000006813-8569.643ENSCATG00000004637U2AF28269.845Cercocebus_atys
ENSCSAVG00000006813-8569.643ENSCLAG00000000596U2AF28269.845Chinchilla_lanigera
ENSCSAVG00000006813-8569.643ENSCSAG00000001722U2AF28269.845Chlorocebus_sabaeus
ENSCSAVG00000006813-8667.734ENSCPBG00000004485U2AF29971.010Chrysemys_picta_bellii
ENSCSAVG00000006813-9689.394ENSCING00000003455-9690.043Ciona_intestinalis
ENSCSAVG00000006813-7867.582ENSCANG00000031002-7870.000Colobus_angolensis_palliatus
ENSCSAVG00000006813-8761.557ENSCANG00000043845-8464.394Colobus_angolensis_palliatus
ENSCSAVG00000006813-8864.146ENSCGRG00001007486-8266.321Cricetulus_griseus_chok1gshd
ENSCSAVG00000006813-8767.494ENSCGRG00001003185-8569.845Cricetulus_griseus_chok1gshd
ENSCSAVG00000006813-5070.130ENSCGRG00000004524-7967.347Cricetulus_griseus_crigri
ENSCSAVG00000006813-8864.146ENSCGRG00000018587-8266.321Cricetulus_griseus_crigri
ENSCSAVG00000006813-9563.844ENSCSEG00000020504-8668.312Cynoglossus_semilaevis
ENSCSAVG00000006813-7464.557ENSCSEG00000018709u2af2a8064.557Cynoglossus_semilaevis
ENSCSAVG00000006813-9461.978ENSCVAG00000023307-8368.653Cyprinodon_variegatus
ENSCSAVG00000006813-9962.882ENSCVAG00000001259u2af2a8469.072Cyprinodon_variegatus
ENSCSAVG00000006813-9064.218ENSDARG00000012505u2af2a8468.286Danio_rerio
ENSCSAVG00000006813-9263.048ENSDARG00000011740u2af2b9165.022Danio_rerio
ENSCSAVG00000006813-7867.582ENSDNOG00000047039U2AF27870.000Dasypus_novemcinctus
ENSCSAVG00000006813-8568.939ENSDORG00000003250U2af28368.939Dipodomys_ordii
ENSCSAVG00000006813-8663.300FBgn0005411U2af5010065.946Drosophila_melanogaster
ENSCSAVG00000006813-8946.682FBgn0034834LS28849.257Drosophila_melanogaster
ENSCSAVG00000006813-9353.147ENSEBUG00000001732U2AF28557.584Eptatretus_burgeri
ENSCSAVG00000006813-9262.963ENSEBUG00000010917U2AF28767.168Eptatretus_burgeri
ENSCSAVG00000006813-8568.939ENSEASG00005020708U2AF27868.939Equus_asinus_asinus
ENSCSAVG00000006813-8767.494ENSECAG00000010110U2AF28569.845Equus_caballus
ENSCSAVG00000006813-9065.625ENSELUG00000018459-8767.866Esox_lucius
ENSCSAVG00000006813-9962.554ENSELUG00000022291u2af2b8569.744Esox_lucius
ENSCSAVG00000006813-8667.327ENSELUG00000015850u2af2a8367.506Esox_lucius
ENSCSAVG00000006813-8568.939ENSFCAG00000011504U2AF28368.939Felis_catus
ENSCSAVG00000006813-8569.192ENSFDAG00000011264U2AF28369.192Fukomys_damarensis
ENSCSAVG00000006813-9962.882ENSFHEG00000016025u2af2a8469.072Fundulus_heteroclitus
ENSCSAVG00000006813-8566.919ENSGMOG00000004535u2af2a8568.542Gadus_morhua
ENSCSAVG00000006813-8767.246ENSGALG00000052748U2AF25569.531Gallus_gallus
ENSCSAVG00000006813-8767.250ENSGAFG00000005628-8568.462Gambusia_affinis
ENSCSAVG00000006813-9962.882ENSGAFG00000013626u2af2a7469.072Gambusia_affinis
ENSCSAVG00000006813-9065.311ENSGACG00000010632U2AF28568.974Gasterosteus_aculeatus
ENSCSAVG00000006813-9362.084ENSGACG00000014500-8368.193Gasterosteus_aculeatus
ENSCSAVG00000006813-6771.010ENSGAGG00000011849U2AF29971.010Gopherus_agassizii
ENSCSAVG00000006813-9362.281ENSHBUG00000017424-8368.718Haplochromis_burtoni
ENSCSAVG00000006813-8567.089ENSHBUG00000013935u2af2a9069.072Haplochromis_burtoni
ENSCSAVG00000006813-8568.939ENSHGLG00000005889U2AF28368.939Heterocephalus_glaber_female
ENSCSAVG00000006813-8568.939ENSHGLG00100004757U2AF28668.939Heterocephalus_glaber_male
ENSCSAVG00000006813-9262.529ENSHCOG00000019367u2af2a8567.172Hippocampus_comes
ENSCSAVG00000006813-8566.919ENSIPUG00000009077u2af28468.895Ictalurus_punctatus
ENSCSAVG00000006813-9962.039ENSIPUG00000009844-8668.205Ictalurus_punctatus
ENSCSAVG00000006813-9164.539ENSIPUG00000007717u2af2a8468.367Ictalurus_punctatus
ENSCSAVG00000006813-8568.939ENSSTOG00000019595U2AF28368.939Ictidomys_tridecemlineatus
ENSCSAVG00000006813-8568.939ENSJJAG00000017705U2af28368.939Jaculus_jaculus
ENSCSAVG00000006813-9464.434ENSKMAG00000005960u2af2a8869.072Kryptolebias_marmoratus
ENSCSAVG00000006813-9962.882ENSLBEG00000016162u2af2a8469.072Labrus_bergylta
ENSCSAVG00000006813-9660.377ENSLBEG00000005001-8667.168Labrus_bergylta
ENSCSAVG00000006813-8267.192ENSLACG00000001648U2AF29969.482Latimeria_chalumnae
ENSCSAVG00000006813-9562.000ENSLOCG00000010843-8369.231Lepisosteus_oculatus
ENSCSAVG00000006813-5674.319ENSLOCG00000008050u2af2b7474.319Lepisosteus_oculatus
ENSCSAVG00000006813-9960.304ENSLAFG00000028496-8366.071Loxodonta_africana
ENSCSAVG00000006813-9065.330ENSLAFG00000018056-8368.939Loxodonta_africana
ENSCSAVG00000006813-8568.939ENSMFAG00000038383U2AF28368.939Macaca_fascicularis
ENSCSAVG00000006813-8568.687ENSMMUG00000004810U2AF28368.687Macaca_mulatta
ENSCSAVG00000006813-8569.643ENSMNEG00000042096U2AF28668.939Macaca_nemestrina
ENSCSAVG00000006813-8569.643ENSMLEG00000032219U2AF27669.643Mandrillus_leucophaeus
ENSCSAVG00000006813-8566.334ENSMAMG00000019817u2af2a8867.526Mastacembelus_armatus
ENSCSAVG00000006813-9260.088ENSMAMG00000020158-8367.179Mastacembelus_armatus
ENSCSAVG00000006813-9962.882ENSMZEG00005016563u2af2a8469.072Maylandia_zebra
ENSCSAVG00000006813-9362.281ENSMZEG00005023318-8368.718Maylandia_zebra
ENSCSAVG00000006813-8568.939ENSMAUG00000008180U2af28469.133Mesocricetus_auratus
ENSCSAVG00000006813-8569.643ENSMICG00000027681U2AF28668.939Microcebus_murinus
ENSCSAVG00000006813-6768.506ENSMOCG00000001018-9968.506Microtus_ochrogaster
ENSCSAVG00000006813-8568.939ENSMOCG00000013214-8368.939Microtus_ochrogaster
ENSCSAVG00000006813-9958.017ENSMOCG00000007227-8364.541Microtus_ochrogaster
ENSCSAVG00000006813-8663.107ENSMMOG00000000531-8664.851Mola_mola
ENSCSAVG00000006813-8567.342ENSMMOG00000016600u2af2a8969.330Mola_mola
ENSCSAVG00000006813-9963.181ENSMALG00000009985u2af2a8469.072Monopterus_albus
ENSCSAVG00000006813-8569.643MGP_CAROLIEiJ_G0029150U2af28368.939Mus_caroli
ENSCSAVG00000006813-8569.643ENSMUSG00000030435U2af29971.010Mus_musculus
ENSCSAVG00000006813-8569.643MGP_PahariEiJ_G0021017U2af28368.939Mus_pahari
ENSCSAVG00000006813-8569.643MGP_SPRETEiJ_G0030203U2af28368.939Mus_spretus
ENSCSAVG00000006813-8569.643ENSMPUG00000007135U2AF28269.845Mustela_putorius_furo
ENSCSAVG00000006813-5067.949ENSMLUG00000011051-9767.949Myotis_lucifugus
ENSCSAVG00000006813-8568.939ENSNGAG00000020369U2af28368.939Nannospalax_galili
ENSCSAVG00000006813-8567.089ENSNBRG00000002568u2af2a9069.072Neolamprologus_brichardi
ENSCSAVG00000006813-9560.934ENSNBRG00000011100-8667.168Neolamprologus_brichardi
ENSCSAVG00000006813-9458.072ENSNLEG00000010562U2AF29971.010Nomascus_leucogenys
ENSCSAVG00000006813-8657.214ENSMEUG00000002346U2AF28558.763Notamacropus_eugenii
ENSCSAVG00000006813-9850.889ENSODEG00000009254-8357.967Octodon_degus
ENSCSAVG00000006813-8761.707ENSODEG00000012729-8263.636Octodon_degus
ENSCSAVG00000006813-9364.055ENSONIG00000012793u2af2a8269.072Oreochromis_niloticus
ENSCSAVG00000006813-9362.281ENSONIG00000009682-8368.718Oreochromis_niloticus
ENSCSAVG00000006813-9164.085ENSORLG00000011545u2af2a8869.072Oryzias_latipes
ENSCSAVG00000006813-9164.085ENSORLG00020006941u2af2a8869.072Oryzias_latipes_hni
ENSCSAVG00000006813-9164.085ENSORLG00015012843u2af2a8269.072Oryzias_latipes_hsok
ENSCSAVG00000006813-8965.860ENSOMEG00000011386u2af2a8969.072Oryzias_melastigma
ENSCSAVG00000006813-9842.644ENSOGAG00000034729-7951.093Otolemur_garnettii
ENSCSAVG00000006813-8568.939ENSOGAG00000007206-8368.939Otolemur_garnettii
ENSCSAVG00000006813-9758.643ENSOARG00000001091U2AF28364.646Ovis_aries
ENSCSAVG00000006813-8568.939ENSPPAG00000039782U2AF28368.939Pan_paniscus
ENSCSAVG00000006813-8568.939ENSPPRG00000013843U2AF28368.939Panthera_pardus
ENSCSAVG00000006813-9756.992ENSPTIG00000005489U2AF28564.484Panthera_tigris_altaica
ENSCSAVG00000006813-9960.129ENSPTRG00000011523U2AF29971.010Pan_troglodytes
ENSCSAVG00000006813-8569.643ENSPANG00000008459U2AF28269.845Papio_anubis
ENSCSAVG00000006813-9264.419ENSPKIG00000024346u2af2b8969.152Paramormyrops_kingsleyae
ENSCSAVG00000006813-9664.786ENSPKIG00000014878-8368.718Paramormyrops_kingsleyae
ENSCSAVG00000006813-8851.408ENSPSIG00000008014U2AF28552.854Pelodiscus_sinensis
ENSCSAVG00000006813-9459.954ENSPMGG00000022980u2af2a8863.889Periophthalmus_magnuspinnatus
ENSCSAVG00000006813-8568.939ENSPEMG00000007378U2af29971.010Peromyscus_maniculatus_bairdii
ENSCSAVG00000006813-8568.090ENSPMAG00000004097u2af2a10065.510Petromyzon_marinus
ENSCSAVG00000006813-8569.192ENSPCIG00000018013U2AF28369.192Phascolarctos_cinereus
ENSCSAVG00000006813-9262.584ENSPFOG00000006433-8568.974Poecilia_formosa
ENSCSAVG00000006813-8965.942ENSPFOG00000010799u2af2a8369.072Poecilia_formosa
ENSCSAVG00000006813-9962.882ENSPLAG00000014365u2af2a8469.072Poecilia_latipinna
ENSCSAVG00000006813-9262.361ENSPLAG00000003275-8668.718Poecilia_latipinna
ENSCSAVG00000006813-9962.882ENSPMEG00000002969u2af2a8469.072Poecilia_mexicana
ENSCSAVG00000006813-9262.138ENSPMEG00000003734-8668.462Poecilia_mexicana
ENSCSAVG00000006813-8767.500ENSPREG00000013036-10061.905Poecilia_reticulata
ENSCSAVG00000006813-9464.434ENSPREG00000008739u2af2a8869.072Poecilia_reticulata
ENSCSAVG00000006813-5969.928ENSPPYG00000010429-7769.928Pongo_abelii
ENSCSAVG00000006813-8563.010ENSPCAG00000003709-9563.010Procavia_capensis
ENSCSAVG00000006813-8753.285ENSPCAG00000014399-8355.164Procavia_capensis
ENSCSAVG00000006813-9863.420ENSPCOG00000025870U2AF28668.939Propithecus_coquereli
ENSCSAVG00000006813-8568.687ENSPVAG00000004540U2AF28368.687Pteropus_vampyrus
ENSCSAVG00000006813-9362.281ENSPNYG00000011605-8368.718Pundamilia_nyererei
ENSCSAVG00000006813-8567.089ENSPNYG00000001438u2af2a9069.072Pundamilia_nyererei
ENSCSAVG00000006813-8566.582ENSPNAG00000007182-8368.718Pygocentrus_nattereri
ENSCSAVG00000006813-9163.850ENSPNAG00000017620u2af2a8468.286Pygocentrus_nattereri
ENSCSAVG00000006813-9761.978ENSPNAG00000027289u2af2b8569.152Pygocentrus_nattereri
ENSCSAVG00000006813-8569.643ENSRNOG00000015914U2af28269.845Rattus_norvegicus
ENSCSAVG00000006813-8568.939ENSRBIG00000041018U2AF28368.939Rhinopithecus_bieti
ENSCSAVG00000006813-8563.000ENSRROG00000031103-8569.405Rhinopithecus_roxellana
ENSCSAVG00000006813-9961.304ENSRROG00000031238-8266.158Rhinopithecus_roxellana
ENSCSAVG00000006813-8569.643ENSSBOG00000023891U2AF28269.845Saimiri_boliviensis_boliviensis
ENSCSAVG00000006813-5954.375ENSSHAG00000001167U2AF26560.993Sarcophilus_harrisii
ENSCSAVG00000006813-9962.690ENSSFOG00015003884-9368.123Scleropages_formosus
ENSCSAVG00000006813-8567.172ENSSFOG00015019182u2af2b8769.152Scleropages_formosus
ENSCSAVG00000006813-9361.404ENSSMAG00000013779-8367.949Scophthalmus_maximus
ENSCSAVG00000006813-9462.870ENSSMAG00000012582u2af2a8469.072Scophthalmus_maximus
ENSCSAVG00000006813-9560.888ENSSDUG00000021434-8167.082Seriola_dumerili
ENSCSAVG00000006813-9963.100ENSSDUG00000009457u2af2a8569.330Seriola_dumerili
ENSCSAVG00000006813-9963.100ENSSLDG00000022742u2af2a8469.330Seriola_lalandi_dorsalis
ENSCSAVG00000006813-9560.888ENSSLDG00000016151-8667.082Seriola_lalandi_dorsalis
ENSCSAVG00000006813-8667.901ENSSPUG00000010229U2AF28468.000Sphenodon_punctatus
ENSCSAVG00000006813-9962.473ENSSPAG00000022519u2af2a8569.330Stegastes_partitus
ENSCSAVG00000006813-9362.500ENSSPAG00000005241-8368.974Stegastes_partitus
ENSCSAVG00000006813-8569.643ENSSSCG00000034815U2AF28569.845Sus_scrofa
ENSCSAVG00000006813-9862.389ENSTRUG00000005514u2af2a8668.217Takifugu_rubripes
ENSCSAVG00000006813-8965.217ENSTNIG00000011257-8467.700Tetraodon_nigroviridis
ENSCSAVG00000006813-9165.105ENSTNIG00000008106U2AF28369.330Tetraodon_nigroviridis
ENSCSAVG00000006813-7865.027ENSTBEG00000009104U2AF29567.898Tupaia_belangeri
ENSCSAVG00000006813-8568.939ENSTTRG00000000987U2AF28368.939Tursiops_truncatus
ENSCSAVG00000006813-8568.939ENSUAMG00000019883U2AF28768.939Ursus_americanus
ENSCSAVG00000006813-8568.939ENSUMAG00000024586U2AF29971.010Ursus_maritimus
ENSCSAVG00000006813-8569.643ENSVVUG00000006956U2AF25869.643Vulpes_vulpes
ENSCSAVG00000006813-8765.291ENSXETG00000019128u2af28567.506Xenopus_tropicalis
ENSCSAVG00000006813-9464.434ENSXCOG00000019406u2af2a8869.072Xiphophorus_couchianus
ENSCSAVG00000006813-9962.882ENSXMAG00000011979u2af2a8469.072Xiphophorus_maculatus
ENSCSAVG00000006813-8767.500ENSXMAG00000000768-8068.462Xiphophorus_maculatus

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